Literature DB >> 23329111

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond.

Stephane E Castel1, Robert A Martienssen.   

Abstract

A growing number of functions are emerging for RNA interference (RNAi) in the nucleus, in addition to well-characterized roles in post-transcriptional gene silencing in the cytoplasm. Epigenetic modifications directed by small RNAs have been shown to cause transcriptional repression in plants, fungi and animals. Additionally, increasing evidence indicates that RNAi regulates transcription through interaction with transcriptional machinery. Nuclear small RNAs include small interfering RNAs (siRNAs) and PIWI-interacting RNAs (piRNAs) and are implicated in nuclear processes such as transposon regulation, heterochromatin formation, developmental gene regulation and genome stability.

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Year:  2013        PMID: 23329111      PMCID: PMC4205957          DOI: 10.1038/nrg3355

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  128 in total

1.  RNA-directed DNA methylation in Arabidopsis.

Authors:  Werner Aufsatz; M Florian Mette; Johannes van der Winden; Antonius J M Matzke; Marjori Matzke
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-08       Impact factor: 11.205

2.  A role for vasa in regulating mitotic chromosome condensation in Drosophila.

Authors:  Jun Wei Pek; Toshie Kai
Journal:  Curr Biol       Date:  2010-12-23       Impact factor: 10.834

3.  Separation of stem cell maintenance and transposon silencing functions of Piwi protein.

Authors:  Mikhail S Klenov; Olesya A Sokolova; Evgeny Y Yakushev; Anastasia D Stolyarenko; Elena A Mikhaleva; Sergey A Lavrov; Vladimir A Gvozdev
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-07       Impact factor: 11.205

4.  Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena.

Authors:  Kazufumi Mochizuki; Noah A Fine; Toshitaka Fujisawa; Martin A Gorovsky
Journal:  Cell       Date:  2002-09-20       Impact factor: 41.582

5.  Drosophila PIWI associates with chromatin and interacts directly with HP1a.

Authors:  Brent Brower-Toland; Seth D Findley; Ling Jiang; Li Liu; Hang Yin; Monica Dus; Pei Zhou; Sarah C R Elgin; Haifan Lin
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

6.  qiRNA is a new type of small interfering RNA induced by DNA damage.

Authors:  Heng-Chi Lee; Shwu-Shin Chang; Swati Choudhary; Antti P Aalto; Mekhala Maiti; Dennis H Bamford; Yi Liu
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

7.  Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary.

Authors:  Colin D Malone; Julius Brennecke; Monica Dus; Alexander Stark; W Richard McCombie; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2009-04-23       Impact factor: 41.582

8.  DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana.

Authors:  Pauline E Jullien; Daichi Susaki; Ramesh Yelagandula; Tetsuya Higashiyama; Frédéric Berger
Journal:  Curr Biol       Date:  2012-08-30       Impact factor: 10.834

9.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

10.  RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.

Authors:  Mikel Zaratiegui; Stephane E Castel; Danielle V Irvine; Anna Kloc; Jie Ren; Fei Li; Elisa de Castro; Laura Marín; An-Yun Chang; Derek Goto; W Zacheus Cande; Francisco Antequera; Benoit Arcangioli; Robert A Martienssen
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

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  368 in total

Review 1.  Nuclear Noncoding RNAs and Genome Stability.

Authors:  Jasbeer S Khanduja; Isabel A Calvo; Richard I Joh; Ian T Hill; Mo Motamedi
Journal:  Mol Cell       Date:  2016-07-07       Impact factor: 17.970

2.  The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly.

Authors:  An-Yun Chang; Stephane E Castel; Evan Ernst; Hyun Soo Kim; Robert A Martienssen
Journal:  Cell Rep       Date:  2017-06-20       Impact factor: 9.423

3.  Oryza sativa RNA-Dependent RNA Polymerase 6 Contributes to Double-Strand Break Formation in Meiosis.

Authors:  Changzhen Liu; Yi Shen; Baoxiang Qin; Huili Wen; Jiawen Cheng; Fei Mao; Wenqing Shi; Ding Tang; Guijie Du; Yafei Li; Yufeng Wu; Zhukuan Cheng
Journal:  Plant Cell       Date:  2020-07-30       Impact factor: 11.277

Review 4.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
Journal:  Trends Biochem Sci       Date:  2013-11-23       Impact factor: 13.807

Review 5.  The Cajal body and the nucleolus: "In a relationship" or "It's complicated"?

Authors:  Laura Trinkle-Mulcahy; Judith E Sleeman
Journal:  RNA Biol       Date:  2016-09-23       Impact factor: 4.652

Review 6.  Nanotoxicity: a key obstacle to clinical translation of siRNA-based nanomedicine.

Authors:  Hui Yi Xue; Shimeng Liu; Ho Lun Wong
Journal:  Nanomedicine (Lond)       Date:  2014-02       Impact factor: 5.307

Review 7.  HP1a: a structural chromosomal protein regulating transcription.

Authors:  Joel C Eissenberg; Sarah C R Elgin
Journal:  Trends Genet       Date:  2014-02-17       Impact factor: 11.639

8.  Involvement of telomerase reverse transcriptase in heterochromatin maintenance.

Authors:  Yoshiko Maida; Mami Yasukawa; Naoko Okamoto; Seii Ohka; Keita Kinoshita; Yasushi Totoki; Takashi K Ito; Tohru Minamino; Hiromi Nakamura; Satoko Yamaguchi; Tatsuhiro Shibata; Kenkichi Masutomi
Journal:  Mol Cell Biol       Date:  2014-02-18       Impact factor: 4.272

9.  A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness.

Authors:  Mehdi Jabnoune; David Secco; Cécile Lecampion; Christophe Robaglia; Qingyao Shu; Yves Poirier
Journal:  Plant Cell       Date:  2013-10-04       Impact factor: 11.277

10.  RNA therapeutics: RNAi and antisense mechanisms and clinical applications.

Authors:  Jessica Chery
Journal:  Postdoc J       Date:  2016-07
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