Literature DB >> 23752794

Genomic and epigenetic insights into the molecular bases of heterosis.

Z Jeffrey Chen1.   

Abstract

Heterosis, also known as hybrid vigour, is widespread in plants and animals, but the molecular bases for this phenomenon remain elusive. Recent studies in hybrids and allopolyploids using transcriptomic, proteomic, metabolomic, epigenomic and systems biology approaches have provided new insights. Emerging genomic and epigenetic perspectives suggest that heterosis arises from allelic interactions between parental genomes, leading to altered programming of genes that promote the growth, stress tolerance and fitness of hybrids. For example, epigenetic modifications of key regulatory genes in hybrids and allopolyploids can alter complex regulatory networks of physiology and metabolism, thus modulating biomass and leading to heterosis. The conceptual advances could help to improve plant and animal productivity through the manipulation of heterosis.

Mesh:

Year:  2013        PMID: 23752794     DOI: 10.1038/nrg3503

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  175 in total

1.  Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat.

Authors:  Khalil Kashkush; Moshe Feldman; Avraham A Levy
Journal:  Nat Genet       Date:  2002-12-16       Impact factor: 38.330

Review 2.  The advantages and disadvantages of being polyploid.

Authors:  Luca Comai
Journal:  Nat Rev Genet       Date:  2005-11       Impact factor: 53.242

3.  All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents.

Authors:  Ruth A Swanson-Wagner; Yi Jia; Rhonda DeCook; Lisa A Borsuk; Dan Nettleton; Patrick S Schnable
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-25       Impact factor: 11.205

4.  Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis.

Authors:  Mei Guo; Mary A Rupe; Xiaofeng Yang; Oswald Crasta; Christopher Zinselmeier; Oscar S Smith; Ben Bowen
Journal:  Theor Appl Genet       Date:  2006-07-26       Impact factor: 5.699

Review 5.  Hybrid necrosis: autoimmunity as a potential gene-flow barrier in plant species.

Authors:  Kirsten Bomblies; Detlef Weigel
Journal:  Nat Rev Genet       Date:  2007-04-03       Impact factor: 53.242

6.  Genomewide nonadditive gene regulation in Arabidopsis allotetraploids.

Authors:  Jianlin Wang; Lu Tian; Hyeon-Se Lee; Ning E Wei; Hongmei Jiang; Brian Watson; Andreas Madlung; Thomas C Osborn; R W Doerge; Luca Comai; Z Jeffrey Chen
Journal:  Genetics       Date:  2005-09-19       Impact factor: 4.562

7.  Why are mixed-race people perceived as more attractive?

Authors:  Michael B Lewis
Journal:  Perception       Date:  2010       Impact factor: 1.490

Review 8.  Genomic imprinting: the emergence of an epigenetic paradigm.

Authors:  Anne C Ferguson-Smith
Journal:  Nat Rev Genet       Date:  2011-07-18       Impact factor: 53.242

9.  A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock.

Authors:  Mariano Perales; Paloma Más
Journal:  Plant Cell       Date:  2007-07-06       Impact factor: 11.277

Review 10.  Silencing signals in plants: a long journey for small RNAs.

Authors:  Attila Molnar; Charles Melnyk; David C Baulcombe
Journal:  Genome Biol       Date:  2011-01-11       Impact factor: 13.583

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  177 in total

1.  Transcriptomic changes following synthesis of a Populus full-sib diploid and allotriploid population with different heterozygosities driven by three types of 2n female gamete.

Authors:  Shiping Cheng; Jun Yang; Ting Liao; Xiaohu Zhu; Yujing Suo; Pingdong Zhang; Jun Wang; Xiangyang Kang
Journal:  Plant Mol Biol       Date:  2015-09-29       Impact factor: 4.076

2.  Dissecting repulsion linkage in the dwarfing gene Dw3 region for sorghum plant height provides insights into heterosis.

Authors:  Xin Li; Xianran Li; Eyal Fridman; Tesfaye T Tesso; Jianming Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

3.  Diurnal down-regulation of ethylene biosynthesis mediates biomass heterosis.

Authors:  Qingxin Song; Atsumi Ando; Dongqing Xu; Lei Fang; Tianzhen Zhang; Enamul Huq; Hong Qiao; Xing Wang Deng; Z Jeffrey Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

4.  Natural variation in timing of stress-responsive gene expression predicts heterosis in intraspecific hybrids of Arabidopsis.

Authors:  Marisa Miller; Qingxin Song; Xiaoli Shi; Thomas E Juenger; Z Jeffrey Chen
Journal:  Nat Commun       Date:  2015-07-08       Impact factor: 14.919

5.  MYB-related transcription factors function as regulators of the circadian clock and anthocyanin biosynthesis in Arabidopsis.

Authors:  Nguyen Hoai Nguyen; Hojoung Lee
Journal:  Plant Signal Behav       Date:  2016

Review 6.  Epigenetic Changes in Hybrids.

Authors:  Ian K Greaves; Rebeca Gonzalez-Bayon; Li Wang; Anyu Zhu; Pei-Chuan Liu; Michael Groszmann; W James Peacock; Elizabeth S Dennis
Journal:  Plant Physiol       Date:  2015-05-22       Impact factor: 8.340

7.  Molecular Origins of Complex Heritability in Natural Genotype-to-Phenotype Relationships.

Authors:  Christopher M Jakobson; Daniel F Jarosz
Journal:  Cell Syst       Date:  2019-05-01       Impact factor: 10.304

8.  Integrated transcript and metabolite profiling reveals coordination between biomass size and nitrogen metabolism in Arabidopsis F1 hybrids.

Authors:  Naoya Sugi; Quynh Thi Ngoc Le; Makoto Kobayashi; Miyako Kusano; Hiroshi Shiba
Journal:  Plant Biotechnol (Tokyo)       Date:  2021-03-25       Impact factor: 1.133

9.  Potential limits to the benefits of admixture during biological invasion.

Authors:  Brittany S Barker; Janelle E Cocio; Samantha R Anderson; Joseph E Braasch; Feng A Cang; Heather D Gillette; Katrina M Dlugosch
Journal:  Mol Ecol       Date:  2018-12-21       Impact factor: 6.185

10.  The Evolution of Sex is Tempered by Costly Hybridization in Boechera (Rock Cress).

Authors:  Catherine A Rushworth; Tom Mitchell-Olds
Journal:  J Hered       Date:  2021-03-12       Impact factor: 2.645

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