Literature DB >> 23838953

Chemical probes in plant epigenetics studies.

Huiming Zhang1, Bangshing Wang, Cheng-Guo Duan, Jian-Kang Zhu.   

Abstract

Transcription potential is determined by the accessibility of DNA sequences within the context of chromatin, which is coordinately controlled by various epigenetic modifications. Chemical inhibition of epigenetic regulators provides a quick and effective approach to investigate the roles of epigenetic modifications in controlling many biological processes, especially for species in which genetic information is limited. This mini-review provides a brief overview of epigenetic regulators in the model organism Arabidopsis thaliana and summarizes compounds that have been applied in plant epigenetics studies, with highlights in the applications of these chemical probes in mechanistic and functional investigations.

Entities:  

Keywords:  DNA methylation; chemical inhibitors; histone modification; methyltransferase inhibitors; plant epigenetics

Mesh:

Substances:

Year:  2013        PMID: 23838953      PMCID: PMC4002629          DOI: 10.4161/psb.25364

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  61 in total

Review 1.  Folate biosynthesis, turnover, and transport in plants.

Authors:  Andrew D Hanson; Jesse F Gregory
Journal:  Annu Rev Plant Biol       Date:  2011       Impact factor: 26.379

Review 2.  Histone methylation in higher plants.

Authors:  Chunyan Liu; Falong Lu; Xia Cui; Xiaofeng Cao
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

3.  Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.

Authors:  Jae Bok Heo; Sibum Sung
Journal:  Science       Date:  2010-12-02       Impact factor: 47.728

Review 4.  Establishing, maintaining and modifying DNA methylation patterns in plants and animals.

Authors:  Julie A Law; Steven E Jacobsen
Journal:  Nat Rev Genet       Date:  2010-03       Impact factor: 53.242

Review 5.  RNA-directed DNA methylation.

Authors:  Huiming Zhang; Jian-Kang Zhu
Journal:  Curr Opin Plant Biol       Date:  2011-03-17       Impact factor: 7.834

Review 6.  DNA methylation, H2A.Z, and the regulation of constitutive expression.

Authors:  D Coleman-Derr; D Zilberman
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2012-12-18

7.  The DNA repair protein XRCC1 functions in the plant DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation.

Authors:  María Isabel Martínez-Macías; Dolores Córdoba-Cañero; Rafael R Ariza; Teresa Roldán-Arjona
Journal:  J Biol Chem       Date:  2013-01-11       Impact factor: 5.157

8.  Arabidopsis paired amphipathic helix proteins SNL1 and SNL2 redundantly regulate primary seed dormancy via abscisic acid-ethylene antagonism mediated by histone deacetylation.

Authors:  Zhi Wang; Hong Cao; Yongzhen Sun; Xiaoying Li; Fengying Chen; Annaick Carles; Yong Li; Meng Ding; Cun Zhang; Xin Deng; Wim J J Soppe; Yong-Xiu Liu
Journal:  Plant Cell       Date:  2013-01-31       Impact factor: 11.277

Review 9.  Active DNA demethylation in plants and animals.

Authors:  H Zhang; J-K Zhu
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2012-11-28

10.  Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1.

Authors:  Taiko Kim To; Jong-Myong Kim; Akihiro Matsui; Yukio Kurihara; Taeko Morosawa; Junko Ishida; Maho Tanaka; Takaho Endo; Tetsuji Kakutani; Tetsuro Toyoda; Hiroshi Kimura; Shigeyuki Yokoyama; Kazuo Shinozaki; Motoaki Seki
Journal:  PLoS Genet       Date:  2011-04-28       Impact factor: 5.917

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  2 in total

1.  Genome-wide shifts in histone modifications at early stage of rice infection with Meloidogyne graminicola.

Authors:  Mohammad Reza Atighi; Bruno Verstraeten; Tim De Meyer; Tina Kyndt
Journal:  Mol Plant Pathol       Date:  2021-02-12       Impact factor: 5.663

Review 2.  Quantitative Epigenetics: A New Avenue for Crop Improvement.

Authors:  Vijay Gahlaut; Gaurav Zinta; Vandana Jaiswal; Sanjay Kumar
Journal:  Epigenomes       Date:  2020-11-07
  2 in total

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