Literature DB >> 24122284

Plant promoters: an approach of structure and function.

Milena Silva Porto, Morganna Pollynne Nóbrega Pinheiro, Vandré Guevara Lyra Batista, Roseane Cavalcanti dos Santos, Péricles de Albuquerque Melo Filho, Liziane Maria de Lima.   

Abstract

With current advances in genomics, several technological processes have been generated, resulting in improvement in different segments of molecular research involving prokaryotic and eukaryotic systems. A widely used contribution is the identification of new genes and their functions, which has led to the elucidation of several issues concerning cell regulation and interactions. For this, increase in the knowledge generated from the identification of promoters becomes considerably relevant, especially considering that to generate new technological processes, such as genetically modified organisms, the availability of promoters that regulate the expression of new genes is still limited. Considering that this issue is essential for biotechnologists, this paper presents an updated review of promoters, from their structure to expression, and focuses on the knowledge already available in eukaryotic systems. Information on current promoters and methodologies available for studying their expression are also reported.

Mesh:

Year:  2014        PMID: 24122284     DOI: 10.1007/s12033-013-9713-1

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  88 in total

1.  Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter.

Authors:  D Pribnow
Journal:  Proc Natl Acad Sci U S A       Date:  1975-03       Impact factor: 11.205

Review 2.  Molecular strategies for gene containment in transgenic crops.

Authors:  Henry Daniell
Journal:  Nat Biotechnol       Date:  2002-06       Impact factor: 54.908

Review 3.  The RNA polymerase II core promoter: a key component in the regulation of gene expression.

Authors:  Jennifer E F Butler; James T Kadonaga
Journal:  Genes Dev       Date:  2002-10-15       Impact factor: 11.361

Review 4.  Regulatory regions in DNA: promoters, enhancers, silencers, and insulators.

Authors:  Jean-Jack M Riethoven
Journal:  Methods Mol Biol       Date:  2010

5.  The flowering time regulator CONSTANS is recruited to the FLOWERING LOCUS T promoter via a unique cis-element.

Authors:  Shiv B Tiwari; Yu Shen; Han-Chang Chang; Yanli Hou; Amanda Harris; Siu Fong Ma; Megan McPartland; Graham J Hymus; Luc Adam; Colleen Marion; Alemu Belachew; Peter P Repetti; T Lynne Reuber; Oliver J Ratcliffe
Journal:  New Phytol       Date:  2010-04-12       Impact factor: 10.151

6.  Regulatory context is a crucial part of gene function.

Authors:  Sabine Fessele; Holger Maier; Christian Zischek; Peter J Nelson; Thomas Werner
Journal:  Trends Genet       Date:  2002-02       Impact factor: 11.639

7.  New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.

Authors:  T Lagrange; A N Kapanidis; H Tang; D Reinberg; R H Ebright
Journal:  Genes Dev       Date:  1998-01-01       Impact factor: 11.361

8.  Promoter elements in Drosophila melanogaster revealed by sequence analysis.

Authors:  I R Arkhipova
Journal:  Genetics       Date:  1995-03       Impact factor: 4.562

9.  Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation.

Authors:  Gong Zhang; Radoslaw Lukoszek; Bernd Mueller-Roeber; Zoya Ignatova
Journal:  Nucleic Acids Res       Date:  2010-12-07       Impact factor: 16.971

10.  Identification of plant promoter constituents by analysis of local distribution of short sequences.

Authors:  Yoshiharu Y Yamamoto; Hiroyuki Ichida; Minami Matsui; Junichi Obokata; Tetsuya Sakurai; Masakazu Satou; Motoaki Seki; Kazuo Shinozaki; Tomoko Abe
Journal:  BMC Genomics       Date:  2007-03-08       Impact factor: 3.969

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  31 in total

Review 1.  Synthetic Promoters: Designing the cis Regulatory Modules for Controlled Gene Expression.

Authors:  Jameel Aysha; Muhammad Noman; Fawei Wang; Weican Liu; Yonggang Zhou; Haiyan Li; Xiaowei Li
Journal:  Mol Biotechnol       Date:  2018-08       Impact factor: 2.695

2.  Identification and in silico characterization of cis-acting elements of genes involved in carotenoid biosynthesis in tomato.

Authors:  Archana Koul; Deepak Sharma; Sanjana Kaul; Manoj K Dhar
Journal:  3 Biotech       Date:  2019-06-26       Impact factor: 2.406

3.  In silico comparative analysis of promoters derived from plant pararetroviruses.

Authors:  Dipinte Gupta; Rajiv Ranjan
Journal:  Virusdisease       Date:  2017-11-28

4.  IGS sequences in Cestrum present AT- and GC-rich conserved domains, with strong regulatory potential for 5S rDNA.

Authors:  Thaíssa Boldieri de Souza; Marcos Letaif Gaeta; Cesar Martins; André Luís Laforga Vanzela
Journal:  Mol Biol Rep       Date:  2019-09-30       Impact factor: 2.316

5.  Leaf layer-based transcriptome profiling for discovery of epidermal-selective promoters in Medicago truncatula.

Authors:  Xin Cui; Ji Hyung Jun; Xiaolan Rao; Camille Bahr; Elisabeth Chapman; Stephen Temple; Richard A Dixon
Journal:  Planta       Date:  2022-07-06       Impact factor: 4.116

6.  Identification of essential element determining fruit-specific transcriptional activity in the tomato HISTIDINE DECARBOXYLASE A gene promoter.

Authors:  Hyun Min Kim; Se Hee Park; Seo Young Park; Sang Hoon Ma; Ju Hui Do; Ah Young Kim; Mi Jin Jeon; Jae Sung Shim; Young Hee Joung
Journal:  Plant Cell Rep       Date:  2022-06-23       Impact factor: 4.964

7.  Identification and expression analysis of phospholipase C family genes between different male fertility accessions in pepper.

Authors:  Yongfu Wang; Shufang Zhao; Bingdiao Gou; Panpan Duan; Min Wei; Nan Yang; Gaoyuan Zhang; Bingqiang Wei
Journal:  Protoplasma       Date:  2022-03-16       Impact factor: 3.186

8.  Molecular cloning and functional characterization of a seed-specific VvβVPE gene promoter from Vitis vinifera.

Authors:  Peijie Gong; Rong Wei; Yan Li; Ruipu Wang; Yujin Tang; Ling Wang; Huijun Zhu; Yuejin Wang; Chaohong Zhang
Journal:  Planta       Date:  2019-05-30       Impact factor: 4.116

9.  Isolation, characterization, and evaluation of three Citrus sinensis-derived constitutive gene promoters.

Authors:  L Erpen; E C R Tavano; R Harakava; M Dutt; J W Grosser; S M S Piedade; B M J Mendes; F A A Mourão Filho
Journal:  Plant Cell Rep       Date:  2018-05-23       Impact factor: 4.570

10.  Identification of a 193 bp promoter region of TaNRX1-D gene from common wheat that contributes to osmotic or ABA stress inducibility in transgenic Arabidopsis.

Authors:  Jie Cheng; Fan Wei; Mingfei Zhang; Nan Li; Tianqi Song; Yong Wang; Dongsheng Chen; Jishan Xiang; Xiaoke Zhang
Journal:  Genes Genomics       Date:  2021-06-18       Impact factor: 1.839

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