Literature DB >> 21754792

2-Amino-3-carb-oxy-pyrazin-1-ium dihydrogen phosphate.

Fadila Berrah, Sofiane Bouacida, Thierry Roisnel.   

Abstract

In the crystal structure of the title compound, C(5)H(6)N(3)O(2) (+)·H(2)PO(4) (-), the dihydrogen phosphate anions are linked through short O-H⋯O hydrogen bonds, forming infinite double chains running parallel to the b axis. Centrosymetric N-H⋯O hydrogen-bonded cationic dimers form bridges between these chains by means of inter-molecular N-H⋯O and O-H⋯O hydrogen bonds, leading to a two-dimensional network parallel to (100) in which R(3) (3)(12), R(4) (3)(10) R(2) (2)(8) and C(4) graph-set motifs are generated. Weak inter-molecular C-H⋯O hydrogen bonds connect these layers, forming a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754792      PMCID: PMC3120607          DOI: 10.1107/S1600536811017521

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hybrid compounds based on N-heterocycles, see: Akriche & Rzaigui (2007 ▶); Berrah et al. (2011a ▶,b ▶,c ▶); Ouakkaf et al. (2011 ▶). For related dihydrogenphosphte compounds, see: Lin et al. (2009 ▶); Shao et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶).

Experimental

Crystal data

C5H6N3O2 +·H2PO4 M = 237.11 Monoclinic, a = 8.6076 (5) Å b = 4.6703 (3) Å c = 21.9431 (13) Å β = 95.573 (2)° V = 877.94 (9) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 150 K 0.45 × 0.06 × 0.04 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.898, T max = 0.987 7993 measured reflections 2004 independent reflections 1781 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.079 S = 1.04 2004 reflections 139 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811017521/lh5248sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017521/lh5248Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811017521/lh5248Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6N3O2+·H2PO4F(000) = 488
Mr = 237.11Dx = 1.794 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4062 reflections
a = 8.6076 (5) Åθ = 3.2–27.5°
b = 4.6703 (3) ŵ = 0.33 mm1
c = 21.9431 (13) ÅT = 150 K
β = 95.573 (2)°Needle, colourless
V = 877.94 (9) Å30.45 × 0.06 × 0.04 mm
Z = 4
Bruker APEXII diffractometer1781 reflections with I > 2σ(I)
graphiteRint = 0.025
CCD rotation images, thin slices scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −11→7
Tmin = 0.898, Tmax = 0.987k = −6→6
7993 measured reflectionsl = −28→28
2004 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0383P)2 + 0.6558P] where P = (Fo2 + 2Fc2)/3
2004 reflections(Δ/σ)max = 0.001
139 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.86142 (15)0.8016 (3)0.90992 (6)0.0173 (3)
H1A0.87330.87410.87360.021*
H1B0.91910.86450.94250.021*
C20.75718 (17)0.5988 (3)0.91547 (6)0.0137 (3)
N30.66953 (15)0.5047 (3)0.86483 (5)0.0149 (3)
H30.68340.5830.82930.018*
C40.56229 (17)0.2967 (3)0.86666 (7)0.0165 (3)
H40.50450.23390.830.02*
C50.53675 (17)0.1756 (3)0.92166 (7)0.0171 (3)
H50.46080.02880.9230.02*
N60.61838 (15)0.2626 (3)0.97404 (6)0.0166 (3)
C70.72487 (17)0.4646 (3)0.97204 (6)0.0142 (3)
C80.81279 (17)0.5559 (3)1.03115 (7)0.0155 (3)
O90.91059 (13)0.7446 (2)1.03400 (5)0.0214 (3)
O100.77252 (13)0.4096 (3)1.07821 (5)0.0212 (3)
H100.82190.47121.11040.032*
P10.79097 (4)0.97152 (8)0.740127 (16)0.01125 (11)
O110.70388 (12)0.7004 (2)0.75265 (5)0.0161 (2)
O120.66950 (12)1.1937 (2)0.71167 (5)0.0162 (2)
H120.6961.35880.72380.024*
O130.89962 (12)0.9251 (2)0.68787 (5)0.0183 (2)
H130.96970.80650.69940.027*
O140.88101 (12)1.0854 (2)0.79764 (5)0.0158 (2)
U11U22U33U12U13U23
N10.0199 (6)0.0194 (7)0.0125 (6)−0.0029 (5)0.0013 (5)0.0017 (5)
C20.0139 (7)0.0139 (7)0.0134 (6)0.0041 (5)0.0019 (5)−0.0008 (5)
N30.0177 (6)0.0157 (6)0.0113 (6)0.0025 (5)0.0013 (5)0.0010 (5)
C40.0150 (7)0.0166 (7)0.0173 (7)0.0029 (6)−0.0014 (6)−0.0021 (6)
C50.0141 (7)0.0177 (7)0.0193 (7)−0.0006 (6)0.0015 (6)−0.0016 (6)
N60.0160 (6)0.0182 (6)0.0158 (6)0.0017 (5)0.0027 (5)0.0000 (5)
C70.0144 (7)0.0160 (7)0.0123 (6)0.0027 (5)0.0020 (5)−0.0003 (5)
C80.0160 (7)0.0172 (7)0.0135 (7)0.0028 (6)0.0023 (5)−0.0006 (5)
O90.0245 (6)0.0223 (6)0.0168 (5)−0.0050 (5)−0.0003 (4)−0.0013 (4)
O100.0233 (6)0.0296 (6)0.0106 (5)−0.0056 (5)0.0011 (4)0.0010 (4)
P10.01218 (19)0.01066 (18)0.01087 (18)0.00067 (13)0.00093 (13)−0.00036 (13)
O110.0213 (5)0.0112 (5)0.0156 (5)−0.0021 (4)0.0010 (4)−0.0006 (4)
O120.0158 (5)0.0107 (5)0.0212 (5)0.0021 (4)−0.0025 (4)−0.0026 (4)
O130.0182 (5)0.0239 (6)0.0132 (5)0.0094 (4)0.0034 (4)0.0031 (4)
O140.0168 (5)0.0181 (5)0.0121 (5)−0.0043 (4)0.0004 (4)0.0003 (4)
N1—C21.319 (2)N6—C71.319 (2)
N1—H1A0.88C7—C81.4987 (19)
N1—H1B0.88C8—O91.2161 (19)
C2—N31.3543 (18)C8—O101.3127 (18)
C2—C71.442 (2)O10—H100.84
N3—C41.343 (2)P1—O111.5101 (11)
N3—H30.88P1—O141.5120 (10)
C4—C51.370 (2)P1—O121.5597 (11)
C4—H40.95P1—O131.5636 (11)
C5—N61.3503 (19)O12—H120.84
C5—H50.95O13—H130.84
C2—N1—H1A120N6—C7—C2122.16 (13)
C2—N1—H1B120N6—C7—C8117.96 (13)
H1A—N1—H1B120C2—C7—C8119.88 (13)
N1—C2—N3119.16 (13)O9—C8—O10124.84 (14)
N1—C2—C7125.57 (13)O9—C8—C7122.65 (14)
N3—C2—C7115.26 (13)O10—C8—C7112.51 (13)
C4—N3—C2122.68 (13)C8—O10—H10109.5
C4—N3—H3118.7O11—P1—O14111.49 (6)
C2—N3—H3118.7O11—P1—O12107.77 (6)
N3—C4—C5119.62 (14)O14—P1—O12111.69 (6)
N3—C4—H4120.2O11—P1—O13111.11 (6)
C5—C4—H4120.2O14—P1—O13111.48 (6)
N6—C5—C4120.73 (14)O12—P1—O13102.94 (6)
N6—C5—H5119.6P1—O12—H12109.5
C4—C5—H5119.6P1—O13—H13109.5
C7—N6—C5119.53 (13)
N1—C2—N3—C4179.23 (13)N3—C2—C7—N60.6 (2)
C7—C2—N3—C4−1.4 (2)N1—C2—C7—C80.5 (2)
C2—N3—C4—C51.2 (2)N3—C2—C7—C8−178.86 (12)
N3—C4—C5—N6−0.1 (2)N6—C7—C8—O9−178.37 (14)
C4—C5—N6—C7−0.6 (2)C2—C7—C8—O91.1 (2)
C5—N6—C7—C20.4 (2)N6—C7—C8—O101.9 (2)
C5—N6—C7—C8179.86 (13)C2—C7—C8—O10−178.58 (13)
N1—C2—C7—N6179.93 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O140.881.942.8171 (17)171
N1—H1B···O90.882.092.7275 (17)128
N1—H1B···O9i0.882.373.0640 (19)136
N3—H3···O110.881.792.6690 (16)173
O10—H10···O13ii0.841.832.6591 (16)169
O12—H12···O11iii0.841.722.5386 (14)166
O13—H13···O14iv0.841.642.4634 (16)164
C4—H4···O11v0.952.433.3377 (19)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O140.881.942.8171 (17)171
N1—H1B⋯O90.882.092.7275 (17)128
N1—H1B⋯O9i0.882.373.0640 (19)136
N3—H3⋯O110.881.792.6690 (16)173
O10—H10⋯O13ii0.841.832.6591 (16)169
O12—H12⋯O11iii0.841.722.5386 (14)166
O13—H13⋯O14iv0.841.642.4634 (16)164
C4—H4⋯O11v0.952.433.3377 (19)160

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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