| Literature DB >> 21754792 |
Fadila Berrah, Sofiane Bouacida, Thierry Roisnel.
Abstract
In the crystal structure of the title compound, C(5)H(6)N(3)O(2) (+)·H(2)PO(4) (-), the dihydrogen phosphate anions are linked through short O-H⋯O hydrogen bonds, forming infinite double chains running parallel to the b axis. Centrosymetric N-H⋯O hydrogen-bonded cationic dimers form bridges between these chains by means of inter-molecular N-H⋯O and O-H⋯O hydrogen bonds, leading to a two-dimensional network parallel to (100) in which R(3) (3)(12), R(4) (3)(10) R(2) (2)(8) and C(4) graph-set motifs are generated. Weak inter-molecular C-H⋯O hydrogen bonds connect these layers, forming a three-dimensional network.Entities:
Year: 2011 PMID: 21754792 PMCID: PMC3120607 DOI: 10.1107/S1600536811017521
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6N3O2+·H2PO4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4062 reflections |
| θ = 3.2–27.5° | |
| µ = 0.33 mm−1 | |
| β = 95.573 (2)° | Needle, colourless |
| 0.45 × 0.06 × 0.04 mm | |
| Bruker APEXII diffractometer | 1781 reflections with |
| graphite | |
| CCD rotation images, thin slices scans | θmax = 27.5°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 7993 measured reflections | |
| 2004 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2004 reflections | (Δ/σ)max = 0.001 |
| 139 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.39 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.86142 (15) | 0.8016 (3) | 0.90992 (6) | 0.0173 (3) | |
| H1A | 0.8733 | 0.8741 | 0.8736 | 0.021* | |
| H1B | 0.9191 | 0.8645 | 0.9425 | 0.021* | |
| C2 | 0.75718 (17) | 0.5988 (3) | 0.91547 (6) | 0.0137 (3) | |
| N3 | 0.66953 (15) | 0.5047 (3) | 0.86483 (5) | 0.0149 (3) | |
| H3 | 0.6834 | 0.583 | 0.8293 | 0.018* | |
| C4 | 0.56229 (17) | 0.2967 (3) | 0.86666 (7) | 0.0165 (3) | |
| H4 | 0.5045 | 0.2339 | 0.83 | 0.02* | |
| C5 | 0.53675 (17) | 0.1756 (3) | 0.92166 (7) | 0.0171 (3) | |
| H5 | 0.4608 | 0.0288 | 0.923 | 0.02* | |
| N6 | 0.61838 (15) | 0.2626 (3) | 0.97404 (6) | 0.0166 (3) | |
| C7 | 0.72487 (17) | 0.4646 (3) | 0.97204 (6) | 0.0142 (3) | |
| C8 | 0.81279 (17) | 0.5559 (3) | 1.03115 (7) | 0.0155 (3) | |
| O9 | 0.91059 (13) | 0.7446 (2) | 1.03400 (5) | 0.0214 (3) | |
| O10 | 0.77252 (13) | 0.4096 (3) | 1.07821 (5) | 0.0212 (3) | |
| H10 | 0.8219 | 0.4712 | 1.1104 | 0.032* | |
| P1 | 0.79097 (4) | 0.97152 (8) | 0.740127 (16) | 0.01125 (11) | |
| O11 | 0.70388 (12) | 0.7004 (2) | 0.75265 (5) | 0.0161 (2) | |
| O12 | 0.66950 (12) | 1.1937 (2) | 0.71167 (5) | 0.0162 (2) | |
| H12 | 0.696 | 1.3588 | 0.7238 | 0.024* | |
| O13 | 0.89962 (12) | 0.9251 (2) | 0.68787 (5) | 0.0183 (2) | |
| H13 | 0.9697 | 0.8065 | 0.6994 | 0.027* | |
| O14 | 0.88101 (12) | 1.0854 (2) | 0.79764 (5) | 0.0158 (2) |
| N1 | 0.0199 (6) | 0.0194 (7) | 0.0125 (6) | −0.0029 (5) | 0.0013 (5) | 0.0017 (5) |
| C2 | 0.0139 (7) | 0.0139 (7) | 0.0134 (6) | 0.0041 (5) | 0.0019 (5) | −0.0008 (5) |
| N3 | 0.0177 (6) | 0.0157 (6) | 0.0113 (6) | 0.0025 (5) | 0.0013 (5) | 0.0010 (5) |
| C4 | 0.0150 (7) | 0.0166 (7) | 0.0173 (7) | 0.0029 (6) | −0.0014 (6) | −0.0021 (6) |
| C5 | 0.0141 (7) | 0.0177 (7) | 0.0193 (7) | −0.0006 (6) | 0.0015 (6) | −0.0016 (6) |
| N6 | 0.0160 (6) | 0.0182 (6) | 0.0158 (6) | 0.0017 (5) | 0.0027 (5) | 0.0000 (5) |
| C7 | 0.0144 (7) | 0.0160 (7) | 0.0123 (6) | 0.0027 (5) | 0.0020 (5) | −0.0003 (5) |
| C8 | 0.0160 (7) | 0.0172 (7) | 0.0135 (7) | 0.0028 (6) | 0.0023 (5) | −0.0006 (5) |
| O9 | 0.0245 (6) | 0.0223 (6) | 0.0168 (5) | −0.0050 (5) | −0.0003 (4) | −0.0013 (4) |
| O10 | 0.0233 (6) | 0.0296 (6) | 0.0106 (5) | −0.0056 (5) | 0.0011 (4) | 0.0010 (4) |
| P1 | 0.01218 (19) | 0.01066 (18) | 0.01087 (18) | 0.00067 (13) | 0.00093 (13) | −0.00036 (13) |
| O11 | 0.0213 (5) | 0.0112 (5) | 0.0156 (5) | −0.0021 (4) | 0.0010 (4) | −0.0006 (4) |
| O12 | 0.0158 (5) | 0.0107 (5) | 0.0212 (5) | 0.0021 (4) | −0.0025 (4) | −0.0026 (4) |
| O13 | 0.0182 (5) | 0.0239 (6) | 0.0132 (5) | 0.0094 (4) | 0.0034 (4) | 0.0031 (4) |
| O14 | 0.0168 (5) | 0.0181 (5) | 0.0121 (5) | −0.0043 (4) | 0.0004 (4) | 0.0003 (4) |
| N1—C2 | 1.319 (2) | N6—C7 | 1.319 (2) |
| N1—H1A | 0.88 | C7—C8 | 1.4987 (19) |
| N1—H1B | 0.88 | C8—O9 | 1.2161 (19) |
| C2—N3 | 1.3543 (18) | C8—O10 | 1.3127 (18) |
| C2—C7 | 1.442 (2) | O10—H10 | 0.84 |
| N3—C4 | 1.343 (2) | P1—O11 | 1.5101 (11) |
| N3—H3 | 0.88 | P1—O14 | 1.5120 (10) |
| C4—C5 | 1.370 (2) | P1—O12 | 1.5597 (11) |
| C4—H4 | 0.95 | P1—O13 | 1.5636 (11) |
| C5—N6 | 1.3503 (19) | O12—H12 | 0.84 |
| C5—H5 | 0.95 | O13—H13 | 0.84 |
| C2—N1—H1A | 120 | N6—C7—C2 | 122.16 (13) |
| C2—N1—H1B | 120 | N6—C7—C8 | 117.96 (13) |
| H1A—N1—H1B | 120 | C2—C7—C8 | 119.88 (13) |
| N1—C2—N3 | 119.16 (13) | O9—C8—O10 | 124.84 (14) |
| N1—C2—C7 | 125.57 (13) | O9—C8—C7 | 122.65 (14) |
| N3—C2—C7 | 115.26 (13) | O10—C8—C7 | 112.51 (13) |
| C4—N3—C2 | 122.68 (13) | C8—O10—H10 | 109.5 |
| C4—N3—H3 | 118.7 | O11—P1—O14 | 111.49 (6) |
| C2—N3—H3 | 118.7 | O11—P1—O12 | 107.77 (6) |
| N3—C4—C5 | 119.62 (14) | O14—P1—O12 | 111.69 (6) |
| N3—C4—H4 | 120.2 | O11—P1—O13 | 111.11 (6) |
| C5—C4—H4 | 120.2 | O14—P1—O13 | 111.48 (6) |
| N6—C5—C4 | 120.73 (14) | O12—P1—O13 | 102.94 (6) |
| N6—C5—H5 | 119.6 | P1—O12—H12 | 109.5 |
| C4—C5—H5 | 119.6 | P1—O13—H13 | 109.5 |
| C7—N6—C5 | 119.53 (13) | ||
| N1—C2—N3—C4 | 179.23 (13) | N3—C2—C7—N6 | 0.6 (2) |
| C7—C2—N3—C4 | −1.4 (2) | N1—C2—C7—C8 | 0.5 (2) |
| C2—N3—C4—C5 | 1.2 (2) | N3—C2—C7—C8 | −178.86 (12) |
| N3—C4—C5—N6 | −0.1 (2) | N6—C7—C8—O9 | −178.37 (14) |
| C4—C5—N6—C7 | −0.6 (2) | C2—C7—C8—O9 | 1.1 (2) |
| C5—N6—C7—C2 | 0.4 (2) | N6—C7—C8—O10 | 1.9 (2) |
| C5—N6—C7—C8 | 179.86 (13) | C2—C7—C8—O10 | −178.58 (13) |
| N1—C2—C7—N6 | 179.93 (14) |
| H··· | ||||
| N1—H1A···O14 | 0.88 | 1.94 | 2.8171 (17) | 171 |
| N1—H1B···O9 | 0.88 | 2.09 | 2.7275 (17) | 128 |
| N1—H1B···O9i | 0.88 | 2.37 | 3.0640 (19) | 136 |
| N3—H3···O11 | 0.88 | 1.79 | 2.6690 (16) | 173 |
| O10—H10···O13ii | 0.84 | 1.83 | 2.6591 (16) | 169 |
| O12—H12···O11iii | 0.84 | 1.72 | 2.5386 (14) | 166 |
| O13—H13···O14iv | 0.84 | 1.64 | 2.4634 (16) | 164 |
| C4—H4···O11v | 0.95 | 2.43 | 3.3377 (19) | 160 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.88 | 1.94 | 2.8171 (17) | 171 |
| N1—H1 | 0.88 | 2.09 | 2.7275 (17) | 128 |
| N1—H1 | 0.88 | 2.37 | 3.0640 (19) | 136 |
| N3—H3⋯O11 | 0.88 | 1.79 | 2.6690 (16) | 173 |
| O10—H10⋯O13ii | 0.84 | 1.83 | 2.6591 (16) | 169 |
| O12—H12⋯O11iii | 0.84 | 1.72 | 2.5386 (14) | 166 |
| O13—H13⋯O14iv | 0.84 | 1.64 | 2.4634 (16) | 164 |
| C4—H4⋯O11v | 0.95 | 2.43 | 3.3377 (19) | 160 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .