Literature DB >> 21700725

Structural aspects of translation termination on the ribosome.

Andrei A Korostelev1.   

Abstract

Translation of genetic information encoded in messenger RNAs into polypeptide sequences is carried out by ribosomes in all organisms. When a full protein is synthesized, a stop codon positioned in the ribosomal A site signals termination of translation and protein release. Translation termination depends on class I release factors. Recently, atomic-resolution crystal structures were determined for bacterial 70S ribosome termination complexes bound with release factors RF1 or RF2. In combination with recent biochemical studies, the structures resolve long-standing questions about translation termination. They bring insights into the mechanisms of recognition of all three stop codons, peptidyl-tRNA hydrolysis, and coordination of stop-codon recognition with peptidyl-tRNA hydrolysis. In this review, the structural aspects of these mechanisms are discussed.

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Year:  2011        PMID: 21700725      PMCID: PMC3153966          DOI: 10.1261/rna.2733411

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  117 in total

1.  Optimization of speed and accuracy of decoding in translation.

Authors:  Ingo Wohlgemuth; Corinna Pohl; Marina V Rodnina
Journal:  EMBO J       Date:  2010-09-14       Impact factor: 11.598

2.  The codon specificity of eubacterial release factors is determined by the sequence and size of the recognition loop.

Authors:  David J Young; Christina D Edgar; Elizabeth S Poole; Warren P Tate
Journal:  RNA       Date:  2010-06-28       Impact factor: 4.942

3.  Recognition of the amber UAG stop codon by release factor RF1.

Authors:  Andrei Korostelev; Jianyu Zhu; Haruichi Asahara; Harry F Noller
Journal:  EMBO J       Date:  2010-06-29       Impact factor: 11.598

4.  Evolution of protein synthesis from an RNA world.

Authors:  Harry F Noller
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-04-01       Impact factor: 10.005

5.  Crystal structure of the eukaryotic ribosome.

Authors:  Adam Ben-Shem; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2010-11-26       Impact factor: 47.728

6.  The 2'-OH group of the peptidyl-tRNA stabilizes an active conformation of the ribosomal PTC.

Authors:  Hani S Zaher; Jeffrey J Shaw; Scott A Strobel; Rachel Green
Journal:  EMBO J       Date:  2011-05-06       Impact factor: 11.598

7.  Ribosome recycling depends on a mechanistic link between the FeS cluster domain and a conformational switch of the twin-ATPase ABCE1.

Authors:  Dominik Barthelme; Stephanie Dinkelaker; Sonja-Verena Albers; Paola Londei; Ulrich Ermler; Robert Tampé
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-03       Impact factor: 11.205

Review 8.  EFTu provides an internal kinetic standard for translational accuracy.

Authors:  R C Thompson
Journal:  Trends Biochem Sci       Date:  1988-03       Impact factor: 13.807

9.  Codon recognition in polypeptide chain termination: site directed crosslinking of termination codon to Escherichia coli release factor 2.

Authors:  W Tate; B Greuer; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

10.  Translation termination: new factors and insights.

Authors:  Claudia Baierlein; Heike Krebber
Journal:  RNA Biol       Date:  2010-09-01       Impact factor: 4.652

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  43 in total

1.  Insights into plant consciousness from neuroscience, physics and mathematics: a role for quasicrystals?

Authors:  John Gardiner
Journal:  Plant Signal Behav       Date:  2012-08-17

2.  Structural Basis for Translation Termination on a Pseudouridylated Stop Codon.

Authors:  Egor Svidritskiy; Rohini Madireddy; Andrei A Korostelev
Journal:  J Mol Biol       Date:  2016-04-20       Impact factor: 5.469

3.  Molecular determinants of release factor 2 for ArfA-mediated ribosome rescue.

Authors:  Daisuke Kurita; Tatsuhiko Abo; Hyouta Himeno
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.157

4.  Mechanism of premature translation termination on a sense codon.

Authors:  Egor Svidritskiy; Gabriel Demo; Andrei A Korostelev
Journal:  J Biol Chem       Date:  2018-06-25       Impact factor: 5.157

5.  Mutational characterization and mapping of the 70S ribosome active site.

Authors:  Anne E d'Aquino; Tasfia Azim; Nikolay A Aleksashin; Adam J Hockenberry; Antje Krüger; Michael C Jewett
Journal:  Nucleic Acids Res       Date:  2020-03-18       Impact factor: 16.971

6.  Mechanism of Inhibition of Translation Termination by Blasticidin S.

Authors:  Egor Svidritskiy; Andrei A Korostelev
Journal:  J Mol Biol       Date:  2018-03-02       Impact factor: 5.469

Review 7.  In vitro and in vivo single-molecule fluorescence imaging of ribosome-catalyzed protein synthesis.

Authors:  Corey E Perez; Ruben L Gonzalez
Journal:  Curr Opin Chem Biol       Date:  2011-11-19       Impact factor: 8.822

8.  Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.

Authors:  Cha San Koh; Axel F Brilot; Nikolaus Grigorieff; Andrei A Korostelev
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

9.  Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex.

Authors:  Derek Taylor; Anett Unbehaun; Wen Li; Sanchaita Das; Jianlin Lei; Hstau Y Liao; Robert A Grassucci; Tatyana V Pestova; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

Review 10.  Roadblocks and resolutions in eukaryotic translation.

Authors:  Anthony P Schuller; Rachel Green
Journal:  Nat Rev Mol Cell Biol       Date:  2018-08       Impact factor: 94.444

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