Literature DB >> 22104181

In vitro and in vivo single-molecule fluorescence imaging of ribosome-catalyzed protein synthesis.

Corey E Perez1, Ruben L Gonzalez.   

Abstract

Combined with the availability of highly purified, fluorescently labeled in vitro translation systems, the advent of single-molecule fluorescence imaging has ushered in a new era in high-resolution mechanistic studies of ribosome-catalyzed protein synthesis, or translation. Together with ensemble biochemical investigations of translation and structural studies of functional ribosomal complexes, in vitro single-molecule fluorescence imaging of protein synthesis is providing unique mechanistic insight into this fundamental biological process. More recently, rapidly evolving breakthroughs in fluorescence-based molecular imaging in live cells with sub-diffraction-limit spatial resolution and ever-increasing temporal resolution provide great promise for conducting mechanistic studies of translation and its regulation in living cells. Here we review the remarkable recent progress that has been made in these fields, highlight important mechanistic insights that have been gleaned from these studies thus far, and discuss what we envision lies ahead as these approaches continue to evolve and expand to address increasingly complex mechanistic and regulatory aspects of translation.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22104181      PMCID: PMC3532847          DOI: 10.1016/j.cbpa.2011.11.002

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  72 in total

1.  Cell-free translation reconstituted with purified components.

Authors:  Y Shimizu; A Inoue; Y Tomari; T Suzuki; T Yokogawa; K Nishikawa; T Ueda
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

Review 2.  Single-molecule fluorescence resonance energy transfer.

Authors:  T Ha
Journal:  Methods       Date:  2001-09       Impact factor: 3.608

3.  tRNA dynamics on the ribosome during translation.

Authors:  Scott C Blanchard; Harold D Kim; Ruben L Gonzalez; Joseph D Puglisi; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-18       Impact factor: 11.205

Review 4.  The mechanism of peptidyl transfer catalysis by the ribosome.

Authors:  Edward Ki Yun Leung; Nikolai Suslov; Nicole Tuttle; Raghuvir Sengupta; Joseph Anthony Piccirilli
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

Review 5.  Structural aspects of translation termination on the ribosome.

Authors:  Andrei A Korostelev
Journal:  RNA       Date:  2011-06-23       Impact factor: 4.942

Review 6.  Biological mechanisms, one molecule at a time.

Authors:  Ignacio Tinoco; Ruben L Gonzalez
Journal:  Genes Dev       Date:  2011-06-15       Impact factor: 11.361

Review 7.  Molecular recognition and catalysis in translation termination complexes.

Authors:  Bruno P Klaholz
Journal:  Trends Biochem Sci       Date:  2011-03-17       Impact factor: 13.807

8.  Single-molecule investigations of the stringent response machinery in living bacterial cells.

Authors:  Brian P English; Vasili Hauryliuk; Arash Sanamrad; Stoyan Tankov; Nynke H Dekker; Johan Elf
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

9.  Real-time single-molecule observation of green fluorescent protein synthesis by immobilized ribosomes.

Authors:  Ryo Iizuka; Takashi Funatsu; Sotaro Uemura
Journal:  Methods Mol Biol       Date:  2011

10.  Transfer RNA-mediated regulation of ribosome dynamics during protein synthesis.

Authors:  Jingyi Fei; Arianne C Richard; Jonathan E Bronson; Ruben L Gonzalez
Journal:  Nat Struct Mol Biol       Date:  2011-08-21       Impact factor: 15.369

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  6 in total

Review 1.  smFRET studies of the 'encounter' complexes and subsequent intermediate states that regulate the selectivity of ligand binding.

Authors:  Colin D Kinz-Thompson; Ruben L Gonzalez
Journal:  FEBS Lett       Date:  2014-07-24       Impact factor: 4.124

Review 2.  Probing the mechanisms of translation with force.

Authors:  Christian M Kaiser; Ignacio Tinoco
Journal:  Chem Rev       Date:  2014-01-09       Impact factor: 60.622

3.  Rotation of the head of the 30S ribosomal subunit during mRNA translocation.

Authors:  Zhuojun Guo; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-27       Impact factor: 11.205

Review 4.  Frameshifting dynamics.

Authors:  Ignacio Tinoco; Hee-Kyung Kim; Shannon Yan
Journal:  Biopolymers       Date:  2013-12       Impact factor: 2.505

Review 5.  Single-Molecule Fluorescence Applied to Translation.

Authors:  Arjun Prabhakar; Elisabetta Viani Puglisi; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 6.  Structural dynamics of the N-terminal domain and the Switch loop of Prp8 during spliceosome assembly and activation.

Authors:  Xu Jia; Chengfu Sun
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

  6 in total

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