Literature DB >> 20610545

Evolution of protein synthesis from an RNA world.

Harry F Noller1.   

Abstract

Because of the molecular complexity of the ribosome and protein synthesis, it is a challenge to imagine how translation could have evolved from a primitive RNA World. Two specific suggestions are made here to help to address this, involving separate evolution of the peptidyl transferase and decoding functions. First, it is proposed that translation originally arose not to synthesize functional proteins, but to provide simple (perhaps random) peptides that bound to RNA, increasing its available structure space, and therefore its functional capabilities. Second, it is proposed that the decoding site of the ribosome evolved from a mechanism for duplication of RNA. This process involved homodimeric "duplicator RNAs," resembling the anticodon arms of tRNAs, which directed ligation of trinucleotides in response to an RNA template.

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Year:  2012        PMID: 20610545      PMCID: PMC3312679          DOI: 10.1101/cshperspect.a003681

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  78 in total

1.  Conservation of primary structure in 16S ribosomal RNA.

Authors:  C R Woese; G E Fox; L Zablen; T Uchida; L Bonen; K Pechman; B J Lewis; D Stahl
Journal:  Nature       Date:  1975-03-06       Impact factor: 49.962

2.  Identification of a ribosomal protein essential for peptidyl transferase activity.

Authors:  V G Moore; R E Atchison; G Thomas; M Moran; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1975-03       Impact factor: 11.205

3.  Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes.

Authors:  L P Gavrilova; O E Kostiashkina; V E Koteliansky; N M Rutkevitch; A S Spirin
Journal:  J Mol Biol       Date:  1976-03-15       Impact factor: 5.469

4.  Functional modification of 16S ribosomal RNA by kethoxal.

Authors:  H F Noller; J B Chaires
Journal:  Proc Natl Acad Sci U S A       Date:  1972-11       Impact factor: 11.205

Review 5.  The genetics of bacterial ribosomes.

Authors:  J Davies; M Nomura
Journal:  Annu Rev Genet       Date:  1972       Impact factor: 16.830

6.  How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli.

Authors:  J A Steitz; K Jakes
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

7.  Binding of yeast tRNAPhe anticodon arm to Escherichia coli 30 S ribosomes.

Authors:  S J Rose; P T Lowary; O C Uhlenbeck
Journal:  J Mol Biol       Date:  1983-06-15       Impact factor: 5.469

8.  The site of action of alpha-sarcin on eukaryotic ribosomes. The sequence at the alpha-sarcin cleavage site in 28 S ribosomal ribonucleic acid.

Authors:  Y Endo; I G Wool
Journal:  J Biol Chem       Date:  1982-08-10       Impact factor: 5.157

9.  Covalent crosslinking of tRNA1Val to 16S RNA at the ribosomal P site: identification of crosslinked residues.

Authors:  J B Prince; B H Taylor; D L Thurlow; J Ofengand; R A Zimmermann
Journal:  Proc Natl Acad Sci U S A       Date:  1982-09       Impact factor: 11.205

10.  The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.

Authors:  J Shine; L Dalgarno
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205

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  43 in total

1.  Use of a coenzyme by the glmS ribozyme-riboswitch suggests primordial expansion of RNA chemistry by small molecules.

Authors:  Adrian R Ferré-D'Amaré
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 2.  Structural aspects of translation termination on the ribosome.

Authors:  Andrei A Korostelev
Journal:  RNA       Date:  2011-06-23       Impact factor: 4.942

3.  The RNA worlds in context.

Authors:  Thomas R Cech
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

Review 4.  The parable of the caveman and the Ferrari: protein synthesis and the RNA world.

Authors:  Harry F Noller
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

5.  Systematic chromosomal deletion of bacterial ribosomal protein genes.

Authors:  Shinichiro Shoji; Corey M Dambacher; Zahra Shajani; James R Williamson; Peter G Schultz
Journal:  J Mol Biol       Date:  2011-09-12       Impact factor: 5.469

6.  In the Beginning was a Mutualism - On the Origin of Translation.

Authors:  Marko Vitas; Andrej Dobovišek
Journal:  Orig Life Evol Biosph       Date:  2018-04-30       Impact factor: 1.950

Review 7.  The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function.

Authors:  Jürgen Brosius
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-07-31       Impact factor: 10.005

8.  Single nucleotide translation without ribosomes.

Authors:  Biswarup Jash; Peter Tremmel; Dejana Jovanovic; Clemens Richert
Journal:  Nat Chem       Date:  2021-07-26       Impact factor: 24.427

Review 9.  Ribosome biogenesis in cancer: new players and therapeutic avenues.

Authors:  Joffrey Pelletier; George Thomas; Siniša Volarević
Journal:  Nat Rev Cancer       Date:  2017-12-01       Impact factor: 60.716

10.  Cancer-associated mutations in the ribosomal protein L5 gene dysregulate the HDM2/p53-mediated ribosome biogenesis checkpoint.

Authors:  Ines Oršolić; Slađana Bursać; Deana Jurada; Irena Drmić Hofman; Zlatko Dembić; Jiri Bartek; Ivana Mihalek; Siniša Volarević
Journal:  Oncogene       Date:  2020-02-27       Impact factor: 9.867

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