Literature DB >> 21610115

Shotgun lipidomics on high resolution mass spectrometers.

Dominik Schwudke1, Kai Schuhmann, Ronny Herzog, Stefan R Bornstein, Andrej Shevchenko.   

Abstract

Despite their compositional complexity, lipidomes comprise a large number of isobaric species that cannot be distinguished by conventional low resolution mass spectrometry and therefore in-depth MS/MS analysis was required for their accurate quantification. Here we argue that the progress in high resolution mass spectrometry is changing the concept of lipidome characterization. Because exact masses of isobaric species belonging to different lipid classes are not necessarily identical, they can now be distinguished and directly quantified in total lipid extracts. By streamlining and simplifying the molecular characterization of lipidomes, high resolution mass spectrometry has developed into a generic tool for cell biology and molecular medicine.

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Year:  2011        PMID: 21610115      PMCID: PMC3181034          DOI: 10.1101/cshperspect.a004614

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  41 in total

Review 1.  Shotgun lipidomics: electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples.

Authors:  Xianlin Han; Richard W Gross
Journal:  Mass Spectrom Rev       Date:  2005 May-Jun       Impact factor: 10.946

2.  Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning.

Authors:  Christer S Ejsing; Eva Duchoslav; Julio Sampaio; Kai Simons; Ron Bonner; Christoph Thiele; Kim Ekroos; Andrej Shevchenko
Journal:  Anal Chem       Date:  2006-09-01       Impact factor: 6.986

3.  Dynamic range of mass accuracy in LTQ Orbitrap hybrid mass spectrometer.

Authors:  Alexander Makarov; Eduard Denisov; Oliver Lange; Stevan Horning
Journal:  J Am Soc Mass Spectrom       Date:  2006-06-05       Impact factor: 3.109

4.  Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra.

Authors:  Dominik Schwudke; J Thomas Hannich; Vineeth Surendranath; Vinciane Grimard; Thomas Moehring; Lyle Burton; Teymuras Kurzchalia; Andrej Shevchenko
Journal:  Anal Chem       Date:  2007-05-03       Impact factor: 6.986

Review 5.  Hybrid mass spectrometers for tandem mass spectrometry.

Authors:  Gary L Glish; David J Burinsky
Journal:  J Am Soc Mass Spectrom       Date:  2007-11-29       Impact factor: 3.109

Review 6.  Mass spectrometry: from proteomics to metabolomics and lipidomics.

Authors:  William J Griffiths; Yuqin Wang
Journal:  Chem Soc Rev       Date:  2009-02-04       Impact factor: 54.564

Review 7.  Cellular lipidomics.

Authors:  Gerrit van Meer
Journal:  EMBO J       Date:  2005-09-01       Impact factor: 11.598

8.  Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry.

Authors:  Christer S Ejsing; Julio L Sampaio; Vineeth Surendranath; Eva Duchoslav; Kim Ekroos; Robin W Klemm; Kai Simons; Andrej Shevchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-27       Impact factor: 11.205

9.  Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics.

Authors:  Vitali Matyash; Gerhard Liebisch; Teymuras V Kurzchalia; Andrej Shevchenko; Dominik Schwudke
Journal:  J Lipid Res       Date:  2008-02-16       Impact factor: 5.922

10.  Charting molecular composition of phosphatidylcholines by fatty acid scanning and ion trap MS3 fragmentation.

Authors:  Kim Ekroos; Christer S Ejsing; Ute Bahr; Michael Karas; Kai Simons; Andrej Shevchenko
Journal:  J Lipid Res       Date:  2003-08-16       Impact factor: 5.922

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  63 in total

Review 1.  Proteomic approaches to predict bioavailability of fatty acids and their influence on cancer and chronic disease prevention.

Authors:  Baukje de Roos; Donato F Romagnolo
Journal:  J Nutr       Date:  2012-05-30       Impact factor: 4.798

Review 2.  Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation.

Authors:  Jeremy P Koelmel; Candice Z Ulmer; Christina M Jones; Richard A Yost; John A Bowden
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2017-03-02       Impact factor: 4.698

3.  Rapid and comprehensive 'shotgun' lipidome profiling of colorectal cancer cell derived exosomes.

Authors:  Todd A Lydic; Steven Townsend; Christopher G Adda; Christine Collins; Suresh Mathivanan; Gavin E Reid
Journal:  Methods       Date:  2015-04-20       Impact factor: 3.608

4.  Phospholipid profiles of control and glaucomatous human aqueous humor.

Authors:  Genea Edwards; Katyayini Aribindi; Yenifer Guerra; Richard K Lee; Sanjoy K Bhattacharya
Journal:  Biochimie       Date:  2014-02-21       Impact factor: 4.079

5.  Structure Annotation and Quantification of Wheat Seed Oxidized Lipids by High-Resolution LC-MS/MS.

Authors:  David Riewe; Janine Wiebach; Thomas Altmann
Journal:  Plant Physiol       Date:  2017-08-11       Impact factor: 8.340

6.  Development of an automated multi-injection shotgun lipidomics approach using a triple quadrupole mass spectrometer.

Authors:  John A Bowden; Jackie T Bangma; John R Kucklick
Journal:  Lipids       Date:  2014-04-12       Impact factor: 1.880

Review 7.  Mass spectrometry-based shotgun lipidomics - a critical review from the technical point of view.

Authors:  Fong-Fu Hsu
Journal:  Anal Bioanal Chem       Date:  2018-08-09       Impact factor: 4.142

8.  Optimization of Electrospray Ionization Source Parameters for Lipidomics To Reduce Misannotation of In-Source Fragments as Precursor Ions.

Authors:  Rose M Gathungu; Pablo Larrea; Matthew J Sniatynski; Vasant R Marur; John A Bowden; Jeremy P Koelmel; Pamela Starke-Reed; Van S Hubbard; Bruce S Kristal
Journal:  Anal Chem       Date:  2018-11-02       Impact factor: 6.986

9.  Novel strategies for enhancing shotgun lipidomics for comprehensive analysis of cellular lipidomes.

Authors:  Changfeng Hu; Chunyan Wang; Lijiao He; Xianlin Han
Journal:  Trends Analyt Chem       Date:  2018-11-27       Impact factor: 12.296

Review 10.  Lipidomic analysis of cerebrospinal fluid by mass spectrometry-based methods.

Authors:  Benoit Colsch; Alexandre Seyer; Samia Boudah; Christophe Junot
Journal:  J Inherit Metab Dis       Date:  2014-12-09       Impact factor: 4.982

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