Literature DB >> 28263877

Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation.

Jeremy P Koelmel1, Candice Z Ulmer2, Christina M Jones2, Richard A Yost3, John A Bowden4.   

Abstract

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Year:  2017        PMID： 28263877      PMCID： PMC5584053          DOI： 10.1016/j.bbalip.2017.02.016

Source DB:  PubMed          Journal:  Biochim Biophys Acta Mol Cell Biol Lipids        ISSN： 1388-1981            Impact factor:   4.698


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  50 in total

1.  Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation.

Authors:  Jeremy P Koelmel; Nicholas M Kroeger; Emily L Gill; Candice Z Ulmer; John A Bowden; Rainey E Patterson; Richard A Yost; Timothy J Garrett
Journal:  J Am Soc Mass Spectrom       Date:  2017-03-06       Impact factor: 3.109

2.  Off-line mixed-mode liquid chromatography coupled with reversed phase high performance liquid chromatography-high resolution mass spectrometry to improve coverage in lipidomics analysis.

Authors:  Mónica Narváez-Rivas; Ngoc Vu; Guan-Yuan Chen; Qibin Zhang
Journal:  Anal Chim Acta       Date:  2016-12-10       Impact factor: 6.558

3.  Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning.

Authors:  Christer S Ejsing; Eva Duchoslav; Julio Sampaio; Kai Simons; Ron Bonner; Christoph Thiele; Kim Ekroos; Andrej Shevchenko
Journal:  Anal Chem       Date:  2006-09-01       Impact factor: 6.986

4.  Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra.

Authors:  Dominik Schwudke; J Thomas Hannich; Vineeth Surendranath; Vinciane Grimard; Thomas Moehring; Lyle Burton; Teymuras Kurzchalia; Andrej Shevchenko
Journal:  Anal Chem       Date:  2007-05-03       Impact factor: 6.986

5.  Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations.

Authors:  Xinyu Zhang; Sandilya V B Garimella; Spencer A Prost; Ian K Webb; Tsung-Chi Chen; Keqi Tang; Aleksey V Tolmachev; Randolph V Norheim; Erin S Baker; Gordon A Anderson; Yehia M Ibrahim; Richard D Smith
Journal:  Anal Chem       Date:  2015-05-26       Impact factor: 6.986

Review 6.  Cellular lipidomics.

Authors:  Gerrit van Meer
Journal:  EMBO J       Date:  2005-09-01       Impact factor: 11.598

7.  Quantitative analysis of biological membrane lipids at the low picomole level by nano-electrospray ionization tandem mass spectrometry.

Authors:  B Brügger; G Erben; R Sandhoff; F T Wieland; W D Lehmann
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

8.  Electrospray ionization tandem mass spectrometry of glycerophosphoethanolamine plasmalogen phospholipids.

Authors:  Karin A Zemski Berry; Robert C Murphy
Journal:  J Am Soc Mass Spectrom       Date:  2004-10       Impact factor: 3.109

9.  Shorthand notation for lipid structures derived from mass spectrometry.

Authors:  Gerhard Liebisch; Juan Antonio Vizcaíno; Harald Köfeler; Martin Trötzmüller; William J Griffiths; Gerd Schmitz; Friedrich Spener; Michael J O Wakelam
Journal:  J Lipid Res       Date:  2013-04-02       Impact factor: 5.922

10.  InChI, the IUPAC International Chemical Identifier.

Authors:  Stephen R Heller; Alan McNaught; Igor Pletnev; Stephen Stein; Dmitrii Tchekhovskoi
Journal:  J Cheminform       Date:  2015-05-30       Impact factor: 5.514
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  17 in total

1.  NIST lipidomics workflow questionnaire: an assessment of community-wide methodologies and perspectives.

Authors:  John A Bowden; Candice Z Ulmer; Christina M Jones; Jeremy P Koelmel; Richard A Yost
Journal:  Metabolomics       Date:  2018-03-20       Impact factor: 4.290

Review 2.  Challenges in Identifying the Dark Molecules of Life.

Authors:  María Eugenia Monge; James N Dodds; Erin S Baker; Arthur S Edison; Facundo M Fernández
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2019-03-18       Impact factor: 10.745

3.  Optimization of Electrospray Ionization Source Parameters for Lipidomics To Reduce Misannotation of In-Source Fragments as Precursor Ions.

Authors:  Rose M Gathungu; Pablo Larrea; Matthew J Sniatynski; Vasant R Marur; John A Bowden; Jeremy P Koelmel; Pamela Starke-Reed; Van S Hubbard; Bruce S Kristal
Journal:  Anal Chem       Date:  2018-11-02       Impact factor: 6.986

4.  Combining Micropunch Histology and Multidimensional Lipidomic Measurements for In-Depth Tissue Mapping.

Authors:  Melanie T Odenkirk; Brian M Horman; James N Dodds; Heather B Patisaul; Erin S Baker
Journal:  ACS Meas Sci Au       Date:  2021-10-28

5.  Pan-cancer analysis of pre-diagnostic blood metabolite concentrations in the European Prospective Investigation into Cancer and Nutrition.

Authors:  Marie Breeur; Pietro Ferrari; Laure Dossus; Mazda Jenab; Mattias Johansson; Sabina Rinaldi; Ruth C Travis; Mathilde His; Tim J Key; Julie A Schmidt; Kim Overvad; Anne Tjønneland; Cecilie Kyrø; Joseph A Rothwell; Nasser Laouali; Gianluca Severi; Rudolf Kaaks; Verena Katzke; Matthias B Schulze; Fabian Eichelmann; Domenico Palli; Sara Grioni; Salvatore Panico; Rosario Tumino; Carlotta Sacerdote; Bas Bueno-de-Mesquita; Karina Standahl Olsen; Torkjel Manning Sandanger; Therese Haugdahl Nøst; J Ramón Quirós; Catalina Bonet; Miguel Rodríguez Barranco; María-Dolores Chirlaque; Eva Ardanaz; Malte Sandsveden; Jonas Manjer; Linda Vidman; Matilda Rentoft; David Muller; Kostas Tsilidis; Alicia K Heath; Hector Keun; Jerzy Adamski; Pekka Keski-Rahkonen; Augustin Scalbert; Marc J Gunter; Vivian Viallon
Journal:  BMC Med       Date:  2022-10-19       Impact factor: 11.150

Review 6.  Environmental lipidomics: understanding the response of organisms and ecosystems to a changing world.

Authors:  Jeremy P Koelmel; Michael P Napolitano; Candice Z Ulmer; Vasilis Vasiliou; Timothy J Garrett; Richard A Yost; M N V Prasad; Krystal J Godri Pollitt; John A Bowden
Journal:  Metabolomics       Date:  2020-04-19       Impact factor: 4.290

Review 7.  Multi-omics integration in biomedical research - A metabolomics-centric review.

Authors:  Maria A Wörheide; Jan Krumsiek; Gabi Kastenmüller; Matthias Arnold
Journal:  Anal Chim Acta       Date:  2020-10-22       Impact factor: 6.558

Review 8.  Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources.

Authors:  Tara Eicher; Garrett Kinnebrew; Andrew Patt; Kyle Spencer; Kevin Ying; Qin Ma; Raghu Machiraju; And Ewy A Mathé
Journal:  Metabolites       Date:  2020-05-15

9.  MS-based lipidomics of human blood plasma: a community-initiated position paper to develop accepted guidelines.

Authors:  Bo Burla; Makoto Arita; Masanori Arita; Anne K Bendt; Amaury Cazenave-Gassiot; Edward A Dennis; Kim Ekroos; Xianlin Han; Kazutaka Ikeda; Gerhard Liebisch; Michelle K Lin; Tze Ping Loh; Peter J Meikle; Matej Orešič; Oswald Quehenberger; Andrej Shevchenko; Federico Torta; Michael J O Wakelam; Craig E Wheelock; Markus R Wenk
Journal:  J Lipid Res       Date:  2018-08-16       Impact factor: 5.922

10.  Untargeted Lipidomics for Determining Cellular and Subcellular Responses in Zebrafish (Danio rerio) Liver Cells Following Exposure to Complex Mixtures in U.S. Streams.

Authors:  Huajun Zhen; Quincy Teng; Jonathan D Mosley; Timothy W Collette; Yang Yue; Paul M Bradley; Drew R Ekman
Journal:  Environ Sci Technol       Date:  2021-06-07       Impact factor: 11.357
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