Literature DB >> 16138081

Cellular lipidomics.

Gerrit van Meer1.   

Abstract

The cellular lipidome comprises over 1000 different lipids. Most lipids look similar having a polar head and hydrophobic tails. Still, cells recognize lipids with exquisite specificity. The functionality of lipids is determined by their local concentration, which varies between organelles, between the two leaflets of the lipid bilayer and even within the lateral plane of the membrane. To incorporate function, cellular lipidomics must not only determine which lipids are present but also the concentration of each lipid at each specific intracellular location in time and the lipid's interaction partners. Moreover, cellular lipidomics must include the enzymes of lipid metabolism and transport, their specificity, localization and regulation. Finally, it requires a thorough understanding of the physical properties of lipids and membranes, especially lipid-lipid and lipid-protein interactions. In the context of a cell, the complex relationships between metabolites can only be understood by viewing them as an integrated system. Cellular lipidomics provides a framework for understanding and manipulating the vital role of lipids, especially in membrane transport and sorting and in cell signaling.

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Year:  2005        PMID: 16138081      PMCID: PMC1224688          DOI: 10.1038/sj.emboj.7600798

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  65 in total

1.  Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension.

Authors:  Tobias Baumgart; Samuel T Hess; Watt W Webb
Journal:  Nature       Date:  2003-10-23       Impact factor: 49.962

Review 2.  International Union of Pharmacology. XXXIV. Lysophospholipid receptor nomenclature.

Authors:  Jerold Chun; Edward J Goetzl; Timothy Hla; Yasuyuki Igarashi; Kevin R Lynch; Wouter Moolenaar; Susan Pyne; Gabor Tigyi
Journal:  Pharmacol Rev       Date:  2002-06       Impact factor: 25.468

3.  MDR1 P-glycoprotein is a lipid translocase of broad specificity, while MDR3 P-glycoprotein specifically translocates phosphatidylcholine.

Authors:  A van Helvoort; A J Smith; H Sprong; I Fritzsche; A H Schinkel; P Borst; G van Meer
Journal:  Cell       Date:  1996-11-01       Impact factor: 41.582

4.  Polyene-lipids: a new tool to image lipids.

Authors:  Lars Kuerschner; Christer S Ejsing; Kim Ekroos; Andrej Shevchenko; Kurt I Anderson; Christoph Thiele
Journal:  Nat Methods       Date:  2004-12-21       Impact factor: 28.547

5.  Identification of a family of animal sphingomyelin synthases.

Authors:  Klazien Huitema; Joep van den Dikkenberg; Jos F H M Brouwers; Joost C M Holthuis
Journal:  EMBO J       Date:  2003-12-18       Impact factor: 11.598

6.  The major sites of cellular phospholipid synthesis and molecular determinants of Fatty Acid and lipid head group specificity.

Authors:  Annette L Henneberry; Marcia M Wright; Christopher R McMaster
Journal:  Mol Biol Cell       Date:  2002-09       Impact factor: 4.138

Review 7.  Protein-lipid interactions and phosphoinositide metabolism in membrane traffic: insights from vesicle recycling in nerve terminals.

Authors:  Markus R Wenk; Pietro De Camilli
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-14       Impact factor: 11.205

8.  Natural phosphatidylcholine is actively translocated across the plasma membrane to the surface of mammalian cells.

Authors:  Nanette Kälin; José Fernandes; Sigrún Hrafnsdóttir; Gerrit van Meer
Journal:  J Biol Chem       Date:  2004-06-02       Impact factor: 5.157

Review 9.  Endocytic trafficking of glycosphingolipids in sphingolipid storage diseases.

Authors:  Richard E Pagano
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-05-29       Impact factor: 6.237

10.  Sorting of sphingolipids in epithelial (Madin-Darby canine kidney) cells.

Authors:  G van Meer; E H Stelzer; R W Wijnaendts-van-Resandt; K Simons
Journal:  J Cell Biol       Date:  1987-10       Impact factor: 10.539

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  144 in total

1.  A mouse macrophage lipidome.

Authors:  Edward A Dennis; Raymond A Deems; Richard Harkewicz; Oswald Quehenberger; H Alex Brown; Stephen B Milne; David S Myers; Christopher K Glass; Gary Hardiman; Donna Reichart; Alfred H Merrill; M Cameron Sullards; Elaine Wang; Robert C Murphy; Christian R H Raetz; Teresa A Garrett; Ziqiang Guan; Andrea C Ryan; David W Russell; Jeffrey G McDonald; Bonne M Thompson; Walter A Shaw; Manish Sud; Yihua Zhao; Shakti Gupta; Mano R Maurya; Eoin Fahy; Shankar Subramaniam
Journal:  J Biol Chem       Date:  2010-10-05       Impact factor: 5.157

Review 2.  Spatial organization of transmembrane receptor signalling.

Authors:  Ioanna Bethani; Sigrid S Skånland; Ivan Dikic; Amparo Acker-Palmer
Journal:  EMBO J       Date:  2010-08-18       Impact factor: 11.598

3.  A toxin-based probe reveals cytoplasmic exposure of Golgi sphingomyelin.

Authors:  Biserka Bakrac; Ales Kladnik; Peter Macek; Gavin McHaffie; Andreas Werner; Jeremy H Lakey; Gregor Anderluh
Journal:  J Biol Chem       Date:  2010-05-12       Impact factor: 5.157

4.  Improved method for quantitative analysis of methylated phosphatidylethanolamine species and its application for analysis of diabetic-mouse liver samples.

Authors:  Miao Wang; Geun Hyang Kim; Fang Wei; Hong Chen; Judith Altarejos; Xianlin Han
Journal:  Anal Bioanal Chem       Date:  2015-03-01       Impact factor: 4.142

5.  A thiolate anion buried within the hydrocarbon ruler perturbs PagP lipid acyl chain selection.

Authors:  M Adil Khan; Joel Moktar; Patrick J Mott; Russell E Bishop
Journal:  Biochemistry       Date:  2010-03-23       Impact factor: 3.162

Review 6.  Dynamics in the plasma membrane: how to combine fluidity and order.

Authors:  Didier Marguet; Pierre-François Lenne; Hervé Rigneault; Hai-Tao He
Journal:  EMBO J       Date:  2006-06-22       Impact factor: 11.598

7.  Dynamic molecular confinement in the plasma membrane by microdomains and the cytoskeleton meshwork.

Authors:  Pierre-François Lenne; Laure Wawrezinieck; Fabien Conchonaud; Olivier Wurtz; Annie Boned; Xiao-Jun Guo; Hervé Rigneault; Hai-Tao He; Didier Marguet
Journal:  EMBO J       Date:  2006-07-06       Impact factor: 11.598

Review 8.  Phase boundaries and biological membranes.

Authors:  Gerald W Feigenson
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

9.  Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry.

Authors:  Christer S Ejsing; Julio L Sampaio; Vineeth Surendranath; Eva Duchoslav; Kim Ekroos; Robin W Klemm; Kai Simons; Andrej Shevchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-27       Impact factor: 11.205

Review 10.  Cellular and molecular interactions of phosphoinositides and peripheral proteins.

Authors:  Robert V Stahelin; Jordan L Scott; Cary T Frick
Journal:  Chem Phys Lipids       Date:  2014-02-17       Impact factor: 3.329

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