Literature DB >> 24826174

(1S,3S,8R,9S,10R)-9,10-Ep-oxy-3,7,7,10-tetra-methyl-tri-cyclo-[6.4.0.0(1,3)]dodeca-ne.

Abdoullah Bimoussa1, Aziz Auhmani1, My Youssef Ait Itto1, Jean-Claude Daran2, Abdelwahed Auhmani1.   

Abstract

The title compound, C16H26O, was synthesized by treating (1S,3S,8R)-3,7,7,10-tetra-methyl-tri-cyclo-[6.4.0.0(1,3)]dodec-9-ene with meta-chloro-perbenzoic acid. The mol-ecule is built up from two fused six- and seven-membered rings. The six-membered ring has a half-chair conformation, whereas the seven-membered ring displays a boat conformation. In the crystal, there are no significant intermolecular interactions present.

Entities:  

Year:  2014        PMID: 24826174      PMCID: PMC3998592          DOI: 10.1107/S1600536814006230

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of ep­oxy­des in organic synthesis, see: Mori (1989 ▶); Paddon-Jones et al. (1997 ▶); Taylor et al. (1991 ▶). For their biological activity, see: Kupchan et al. (1989 ▶); Trost et al. (1983 ▶); Vollhardt & Schore (1996 ▶); Yang (2004 ▶). For structural discussion, see: Cremer & Pople (1975 ▶); Flack (1983 ▶); Flack & Bernardinelli (2000 ▶); Spek (2009 ▶); Boessenkool & Boyens (1980 ▶); Benharref et al. (2010 ▶). For the synthesis, see: Auhmani et al. (2001 ▶).

Experimental

Crystal data

C16H26O M = 234.37 Monoclinic, a = 10.5563 (10) Å b = 5.7548 (5) Å c = 11.7096 (13) Å β = 92.777 (8)° V = 710.52 (12) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 180 K 0.31 × 0.31 × 0.25 mm

Data collection

Agilent Xcalibur Eos Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.767, T max = 1.0 8241 measured reflections 2899 independent reflections 2150 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.105 S = 1.05 2899 reflections 158 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814006230/xu5778sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814006230/xu5778Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814006230/xu5778Isup3.cml CCDC reference: 992783 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H26OF(000) = 260
Mr = 234.37Dx = 1.095 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1871 reflections
a = 10.5563 (10) Åθ = 3.9–26.5°
b = 5.7548 (5) ŵ = 0.07 mm1
c = 11.7096 (13) ÅT = 180 K
β = 92.777 (8)°Box, colourless
V = 710.52 (12) Å30.31 × 0.31 × 0.25 mm
Z = 2
Agilent Xcalibur Eos Gemini ultra diffractometer2899 independent reflections
Radiation source: Enhance (Mo) X-ray Source2150 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
Detector resolution: 16.1978 pixels mm-1θmax = 26.4°, θmin = 3.5°
ω scansh = −13→13
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −7→7
Tmin = 0.767, Tmax = 1.0l = −14→14
8241 measured reflections
Refinement on F21 restraint
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H-atom parameters constrained
wR(F2) = 0.105w = 1/[σ2(Fo2) + (0.0267P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2899 reflectionsΔρmax = 0.14 e Å3
158 parametersΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.2747 (3)0.7760 (5)0.3324 (3)0.0241 (7)
C20.2251 (3)0.6047 (6)0.4168 (3)0.0334 (8)
H2A0.22130.43900.39410.040*
H2B0.24610.63220.49900.040*
C30.1336 (3)0.7699 (5)0.3563 (3)0.0276 (7)
C40.0457 (3)0.6751 (6)0.2618 (3)0.0392 (9)
H4A−0.03800.64180.29290.047*
H4B0.08050.52710.23380.047*
C50.0281 (3)0.8450 (7)0.1615 (3)0.0493 (11)
H5A−0.00170.75710.09270.059*
H5B−0.03910.95780.17910.059*
C60.1479 (3)0.9792 (7)0.1341 (3)0.0429 (9)
H6A0.12711.07680.06610.051*
H6B0.16801.08600.19870.051*
C70.2684 (3)0.8433 (6)0.1112 (3)0.0335 (8)
C80.3116 (3)0.6867 (5)0.2160 (3)0.0265 (8)
H80.26750.53420.20430.032*
C90.4518 (3)0.6354 (5)0.2177 (3)0.0295 (8)
H90.48570.59250.14230.035*
C100.5427 (3)0.7440 (6)0.2993 (3)0.0289 (8)
C110.4987 (3)0.9110 (5)0.3879 (3)0.0296 (8)
H11A0.54811.05660.38260.036*
H11B0.51820.84360.46450.036*
C120.3575 (3)0.9715 (5)0.3781 (3)0.0274 (7)
H12A0.32961.01620.45460.033*
H12B0.34541.10780.32720.033*
C130.0746 (3)0.9619 (6)0.4244 (3)0.0381 (9)
H13A0.05821.09700.37500.057*
H13B0.13281.00600.48850.057*
H13C−0.00540.90690.45390.057*
C140.2449 (4)0.6836 (8)0.0066 (3)0.0551 (11)
H14A0.17890.57020.02270.083*
H14B0.32350.6018−0.00940.083*
H14C0.21740.7774−0.05990.083*
C150.3718 (3)1.0198 (6)0.0830 (3)0.0460 (10)
H15A0.34071.11950.01980.069*
H15B0.44780.93670.06080.069*
H15C0.39281.11570.15050.069*
C160.6798 (3)0.7660 (7)0.2706 (3)0.0460 (10)
H16A0.73400.74990.34060.069*
H16B0.69390.91860.23630.069*
H16C0.70070.64380.21640.069*
O10.50267 (19)0.5041 (4)0.31494 (19)0.0350 (6)
U11U22U33U12U13U23
C10.0183 (15)0.0264 (17)0.0278 (18)−0.0012 (14)0.0043 (13)−0.0014 (15)
C20.0307 (19)0.0345 (19)0.035 (2)0.0008 (16)0.0051 (15)0.0065 (16)
C30.0200 (16)0.0298 (18)0.0331 (19)−0.0018 (15)0.0035 (14)0.0032 (16)
C40.0207 (18)0.044 (2)0.053 (3)−0.0058 (16)0.0012 (16)−0.0024 (19)
C50.032 (2)0.063 (3)0.051 (3)0.006 (2)−0.0125 (18)−0.001 (2)
C60.039 (2)0.052 (2)0.036 (2)0.008 (2)−0.0060 (16)0.012 (2)
C70.036 (2)0.040 (2)0.0245 (19)0.0031 (17)−0.0014 (15)0.0003 (16)
C80.0259 (18)0.0267 (18)0.0267 (19)−0.0016 (14)0.0000 (14)−0.0050 (14)
C90.0309 (19)0.0325 (19)0.0254 (19)0.0047 (16)0.0049 (14)0.0018 (16)
C100.0229 (17)0.0339 (19)0.0299 (19)0.0008 (16)0.0008 (14)0.0046 (16)
C110.0251 (17)0.034 (2)0.0295 (19)−0.0038 (14)−0.0014 (14)−0.0024 (15)
C120.0281 (18)0.0302 (17)0.0242 (18)−0.0042 (16)0.0028 (13)−0.0060 (15)
C130.0273 (19)0.036 (2)0.052 (2)0.0061 (16)0.0123 (16)−0.0024 (18)
C140.065 (3)0.069 (3)0.030 (2)0.006 (2)−0.0101 (19)−0.010 (2)
C150.055 (2)0.046 (2)0.037 (2)0.002 (2)0.0087 (17)0.0144 (18)
C160.0251 (19)0.071 (3)0.043 (2)0.000 (2)0.0038 (16)−0.001 (2)
O10.0302 (13)0.0314 (12)0.0433 (15)0.0050 (12)0.0011 (10)0.0018 (12)
C1—C121.507 (4)C9—O11.448 (4)
C1—C21.508 (4)C9—C101.462 (4)
C1—C81.525 (4)C9—H91.0000
C1—C31.529 (4)C10—O11.458 (4)
C2—C31.507 (4)C10—C111.504 (4)
C2—H2A0.9900C10—C161.507 (4)
C2—H2B0.9900C11—C121.530 (4)
C3—C41.511 (5)C11—H11A0.9900
C3—C131.514 (4)C11—H11B0.9900
C4—C51.533 (5)C12—H12A0.9900
C4—H4A0.9900C12—H12B0.9900
C4—H4B0.9900C13—H13A0.9800
C5—C61.529 (5)C13—H13B0.9800
C5—H5A0.9900C13—H13C0.9800
C5—H5B0.9900C14—H14A0.9800
C6—C71.528 (4)C14—H14B0.9800
C6—H6A0.9900C14—H14C0.9800
C6—H6B0.9900C15—H15A0.9800
C7—C151.538 (5)C15—H15B0.9800
C7—C141.541 (5)C15—H15C0.9800
C7—C81.573 (4)C16—H16A0.9800
C8—C91.508 (4)C16—H16B0.9800
C8—H81.0000C16—H16C0.9800
C12—C1—C2118.0 (3)O1—C9—C8116.1 (2)
C12—C1—C8113.6 (2)C10—C9—C8122.5 (3)
C2—C1—C8118.5 (3)O1—C9—H9115.5
C12—C1—C3120.4 (2)C10—C9—H9115.5
C2—C1—C359.52 (19)C8—C9—H9115.5
C8—C1—C3116.7 (3)O1—C10—C959.45 (19)
C3—C2—C160.9 (2)O1—C10—C11114.7 (2)
C3—C2—H2A117.7C9—C10—C11120.6 (3)
C1—C2—H2A117.7O1—C10—C16113.3 (3)
C3—C2—H2B117.7C9—C10—C16119.9 (3)
C1—C2—H2B117.7C11—C10—C16115.6 (3)
H2A—C2—H2B114.8C10—C11—C12115.2 (3)
C2—C3—C4118.3 (3)C10—C11—H11A108.5
C2—C3—C13118.9 (3)C12—C11—H11A108.5
C4—C3—C13113.3 (3)C10—C11—H11B108.5
C2—C3—C159.5 (2)C12—C11—H11B108.5
C4—C3—C1116.3 (3)H11A—C11—H11B107.5
C13—C3—C1120.6 (3)C1—C12—C11113.8 (2)
C3—C4—C5112.2 (3)C1—C12—H12A108.8
C3—C4—H4A109.2C11—C12—H12A108.8
C5—C4—H4A109.2C1—C12—H12B108.8
C3—C4—H4B109.2C11—C12—H12B108.8
C5—C4—H4B109.2H12A—C12—H12B107.7
H4A—C4—H4B107.9C3—C13—H13A109.5
C6—C5—C4114.3 (3)C3—C13—H13B109.5
C6—C5—H5A108.7H13A—C13—H13B109.5
C4—C5—H5A108.7C3—C13—H13C109.5
C6—C5—H5B108.7H13A—C13—H13C109.5
C4—C5—H5B108.7H13B—C13—H13C109.5
H5A—C5—H5B107.6C7—C14—H14A109.5
C7—C6—C5118.9 (3)C7—C14—H14B109.5
C7—C6—H6A107.6H14A—C14—H14B109.5
C5—C6—H6A107.6C7—C14—H14C109.5
C7—C6—H6B107.6H14A—C14—H14C109.5
C5—C6—H6B107.6H14B—C14—H14C109.5
H6A—C6—H6B107.0C7—C15—H15A109.5
C6—C7—C15107.8 (3)C7—C15—H15B109.5
C6—C7—C14110.0 (3)H15A—C15—H15B109.5
C15—C7—C14108.2 (3)C7—C15—H15C109.5
C6—C7—C8111.6 (3)H15A—C15—H15C109.5
C15—C7—C8111.3 (3)H15B—C15—H15C109.5
C14—C7—C8107.9 (3)C10—C16—H16A109.5
C9—C8—C1110.3 (3)C10—C16—H16B109.5
C9—C8—C7111.7 (2)H16A—C16—H16B109.5
C1—C8—C7115.3 (2)C10—C16—H16C109.5
C9—C8—H8106.3H16A—C16—H16C109.5
C1—C8—H8106.3H16B—C16—H16C109.5
C7—C8—H8106.3C9—O1—C1060.41 (19)
O1—C9—C1060.14 (19)
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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Isolation and structural elucidation of allamandin, an antileukemic iridoid lactone from Allamanda cathartica.

Authors:  S M Kupchan; A L Dessertine; B T Blaylock; R F Bryan
Journal:  J Org Chem       Date:  1974-08-23       Impact factor: 4.354

3.  Ketone-catalyzed asymmetric epoxidation reactions.

Authors:  Dan Yang
Journal:  Acc Chem Res       Date:  2004-08       Impact factor: 22.384

4.  (1S,3R,8S,9R,10S)-2,2-Dichloro-3,7,7,10-tetra-methyl-9,10-ep-oxy-tricyclo-[6.4.0.0]dodeca-ne.

Authors:  Ahmed Benharref; Lahcen El Ammari; Daniel Avignant; Abdelghani Oudahmane; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-10

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  Crystal structure of (1R,2S,4R,7R,8S,9R)-3,3-dichloro-8,9-epoxy-4,8,12,12-tetramethyltricyclo[5.5.0.0(2,4)]dodecane.

Authors:  Ahmed Benzalim; Aziz Auhmani; My Youssef Ait Itto; Jean-Claude Daran; Abdelwahed Auhmani
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-04

2.  Crystal structure of (1R,3S,8R,11R)-11-acetyl-3,7,7-trimethyl-10-oxatri-cyclo-[6.4.0.0(1,3)]dodecan-9-one.

Authors:  Abdoullah Bismoussa; My Youssef Ait Itto; Jean-Claude Daran; Abdelwahed Auhmani; Aziz Auhmani
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-12-06
  2 in total

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