Literature DB >> 21589074

N-[(Piperidin-1-yl)carbothioyl]benz-amide.

Aisha A Al-Abbasi1, Mohd Ambar Yarmo, Mohammad B Kassim.   

Abstract

In the title compound, C(13)H(16)N(2)OS, the piperidine ring exhibit a classical chair conformation. In the crystal, the mol-ecules are linked by N-H⋯O hydrogen bonds, forming zigzag chains running parallel to the c axis.

Entities:  

Year:  2010        PMID: 21589074      PMCID: PMC3009313          DOI: 10.1107/S160053681004170X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For complexes with the title compound as a ligand, see: Mohamadou et al. (1994 ▶); Salyn et al. (1977 ▶); Röbisch et al. (1982 ▶).

Experimental

Crystal data

C13H16N2OS M = 248.34 Monoclinic, a = 10.913 (3) Å b = 14.297 (4) Å c = 8.323 (2) Å β = 102.212 (6)° V = 1269.2 (6) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 298 K 0.50 × 0.41 × 0.38 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.889, T max = 0.915 7091 measured reflections 2221 independent reflections 1727 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.126 S = 1.08 2221 reflections 154 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶), PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681004170X/bt5376sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004170X/bt5376Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16N2OSF(000) = 528
Mr = 248.34Dx = 1.300 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1679 reflections
a = 10.913 (3) Åθ = 1.9–25.0°
b = 14.297 (4) ŵ = 0.24 mm1
c = 8.323 (2) ÅT = 298 K
β = 102.212 (6)°Needle, colourless
V = 1269.2 (6) Å30.50 × 0.41 × 0.38 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2221 independent reflections
Radiation source: fine-focus sealed tube1727 reflections with I > 2σ(I)
graphiteRint = 0.031
ω scanθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −12→8
Tmin = 0.889, Tmax = 0.915k = −16→17
7091 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0702P)2 + 0.1087P] where P = (Fo2 + 2Fc2)/3
2221 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.93006 (6)0.86988 (4)0.12334 (8)0.0562 (2)
O11.15395 (14)0.65828 (11)0.05387 (17)0.0500 (4)
N11.07366 (15)0.72851 (13)0.2538 (2)0.0419 (4)
H1A1.08640.74270.35640.050*
N20.88426 (17)0.68658 (13)0.0845 (2)0.0444 (5)
C11.2732 (2)0.63954 (15)0.4875 (3)0.0472 (6)
H1B1.19680.64240.52010.057*
C21.3821 (3)0.61791 (16)0.6010 (3)0.0546 (6)
H2A1.37900.60720.71020.066*
C31.4937 (2)0.61231 (16)0.5526 (3)0.0560 (7)
H3A1.56650.59810.62940.067*
C41.4996 (2)0.62748 (16)0.3912 (3)0.0526 (6)
H4A1.57600.62300.35900.063*
C51.3923 (2)0.64924 (15)0.2774 (3)0.0448 (5)
H5A1.39610.65890.16810.054*
C61.27884 (19)0.65682 (14)0.3256 (2)0.0385 (5)
C71.1646 (2)0.68059 (14)0.1983 (2)0.0393 (5)
C80.95923 (19)0.75579 (16)0.1496 (2)0.0404 (5)
C90.9072 (2)0.58599 (16)0.1188 (3)0.0521 (6)
H9A0.98040.57850.20710.062*
H9B0.92430.55540.02180.062*
C100.7954 (2)0.53997 (16)0.1670 (3)0.0502 (6)
H10A0.80990.47310.17820.060*
H10B0.78640.56400.27290.060*
C110.6756 (2)0.55748 (17)0.0417 (3)0.0576 (7)
H11A0.60510.53190.08130.069*
H11B0.67970.5264−0.06050.069*
C120.6569 (2)0.66148 (17)0.0119 (3)0.0511 (6)
H12A0.58260.6717−0.07360.061*
H12B0.64380.69140.11150.061*
C130.7685 (2)0.70500 (17)−0.0388 (3)0.0491 (6)
H13A0.77670.6796−0.14410.059*
H13B0.75590.7720−0.05140.059*
U11U22U33U12U13U23
S10.0585 (4)0.0490 (4)0.0571 (4)0.0034 (3)0.0029 (3)0.0042 (3)
O10.0432 (9)0.0702 (11)0.0352 (9)0.0035 (8)0.0048 (7)−0.0055 (7)
N10.0350 (10)0.0584 (11)0.0305 (9)0.0052 (9)0.0028 (7)−0.0008 (7)
N20.0314 (10)0.0495 (11)0.0489 (10)0.0030 (9)0.0009 (8)0.0062 (8)
C10.0428 (13)0.0551 (14)0.0431 (13)0.0013 (11)0.0078 (10)0.0043 (10)
C20.0624 (16)0.0561 (15)0.0399 (13)0.0032 (13)−0.0013 (11)0.0079 (10)
C30.0446 (14)0.0504 (14)0.0619 (16)0.0031 (11)−0.0136 (12)0.0039 (11)
C40.0352 (13)0.0545 (15)0.0653 (16)0.0000 (11)0.0044 (11)−0.0026 (11)
C50.0383 (12)0.0496 (13)0.0456 (12)−0.0010 (10)0.0065 (10)−0.0002 (10)
C60.0341 (12)0.0411 (11)0.0387 (11)−0.0015 (9)0.0042 (9)0.0004 (9)
C70.0342 (12)0.0475 (12)0.0359 (11)−0.0035 (10)0.0065 (9)0.0032 (9)
C80.0351 (11)0.0556 (13)0.0313 (10)0.0023 (10)0.0084 (9)0.0030 (9)
C90.0374 (13)0.0471 (13)0.0689 (16)0.0065 (11)0.0051 (11)0.0026 (11)
C100.0447 (14)0.0438 (12)0.0586 (13)−0.0018 (11)0.0033 (11)0.0000 (10)
C110.0454 (14)0.0603 (15)0.0625 (15)−0.0081 (12)0.0012 (12)−0.0025 (12)
C120.0338 (12)0.0640 (15)0.0505 (13)0.0001 (11)−0.0027 (10)−0.0025 (11)
C130.0396 (13)0.0599 (14)0.0420 (12)0.0039 (11)−0.0041 (10)0.0062 (10)
S1—C81.667 (2)C5—C61.385 (3)
O1—C71.225 (2)C5—H5A0.9300
N1—C71.364 (3)C6—C71.495 (3)
N1—C81.416 (3)C9—C101.514 (3)
N1—H1A0.8600C9—H9A0.9700
N2—C81.325 (3)C9—H9B0.9700
N2—C131.473 (3)C10—C111.511 (3)
N2—C91.477 (3)C10—H10A0.9700
C1—C61.385 (3)C10—H10B0.9700
C1—C21.388 (3)C11—C121.514 (3)
C1—H1B0.9300C11—H11A0.9700
C2—C31.364 (4)C11—H11B0.9700
C2—H2A0.9300C12—C131.506 (3)
C3—C41.376 (3)C12—H12A0.9700
C3—H3A0.9300C12—H12B0.9700
C4—C51.377 (3)C13—H13A0.9700
C4—H4A0.9300C13—H13B0.9700
C7—N1—C8122.74 (17)N2—C9—C10111.15 (18)
C7—N1—H1A118.6N2—C9—H9A109.4
C8—N1—H1A118.6C10—C9—H9A109.4
C8—N2—C13121.05 (18)N2—C9—H9B109.4
C8—N2—C9125.68 (18)C10—C9—H9B109.4
C13—N2—C9113.22 (18)H9A—C9—H9B108.0
C6—C1—C2119.6 (2)C11—C10—C9111.9 (2)
C6—C1—H1B120.2C11—C10—H10A109.2
C2—C1—H1B120.2C9—C10—H10A109.2
C3—C2—C1120.2 (2)C11—C10—H10B109.2
C3—C2—H2A119.9C9—C10—H10B109.2
C1—C2—H2A119.9H10A—C10—H10B107.9
C2—C3—C4120.5 (2)C10—C11—C12110.07 (19)
C2—C3—H3A119.7C10—C11—H11A109.6
C4—C3—H3A119.7C12—C11—H11A109.6
C3—C4—C5119.9 (2)C10—C11—H11B109.6
C3—C4—H4A120.0C12—C11—H11B109.6
C5—C4—H4A120.0H11A—C11—H11B108.2
C4—C5—C6120.1 (2)C13—C12—C11111.2 (2)
C4—C5—H5A120.0C13—C12—H12A109.4
C6—C5—H5A120.0C11—C12—H12A109.4
C1—C6—C5119.7 (2)C13—C12—H12B109.4
C1—C6—C7121.89 (19)C11—C12—H12B109.4
C5—C6—C7118.43 (18)H12A—C12—H12B108.0
O1—C7—N1122.59 (19)N2—C13—C12110.88 (18)
O1—C7—C6121.86 (19)N2—C13—H13A109.5
N1—C7—C6115.56 (17)C12—C13—H13A109.5
N2—C8—N1115.66 (19)N2—C13—H13B109.5
N2—C8—S1126.36 (16)C12—C13—H13B109.5
N1—C8—S1117.96 (16)H13A—C13—H13B108.1
C6—C1—C2—C3−1.0 (3)C13—N2—C8—N1−173.80 (17)
C1—C2—C3—C4−0.3 (4)C9—N2—C8—N13.5 (3)
C2—C3—C4—C50.5 (3)C13—N2—C8—S17.6 (3)
C3—C4—C5—C60.7 (3)C9—N2—C8—S1−175.12 (16)
C2—C1—C6—C52.2 (3)C7—N1—C8—N265.2 (3)
C2—C1—C6—C7−179.9 (2)C7—N1—C8—S1−116.00 (19)
C4—C5—C6—C1−2.0 (3)C8—N2—C9—C10128.2 (2)
C4—C5—C6—C7179.98 (19)C13—N2—C9—C10−54.3 (2)
C8—N1—C7—O10.5 (3)N2—C9—C10—C1153.4 (3)
C8—N1—C7—C6−179.52 (18)C9—C10—C11—C12−54.2 (3)
C1—C6—C7—O1−148.6 (2)C10—C11—C12—C1355.5 (3)
C5—C6—C7—O129.4 (3)C8—N2—C13—C12−126.5 (2)
C1—C6—C7—N131.4 (3)C9—N2—C13—C1255.8 (2)
C5—C6—C7—N1−150.61 (19)C11—C12—C13—N2−56.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.862.182.949 (2)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.862.182.949 (2)149

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  1-Benzoyl-3-ethyl-3-phenyl-thio-urea.

Authors:  Aisha A Al-Abbasi; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

3.  1,1-Diethyl-3-(4-meth-oxy-benzo-yl)thio-urea.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-25

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Authors:  Aisha A Al-Abbasi; Mohamed Ibrahim Mohamed Tahir; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-21

5.  3-(3-Meth-oxy-benzo-yl)-1,1-diphenyl-thio-urea.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Bohari M Yamin; W R W Daud; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

6.  Crystal structure of 4-methyl-N-[2-(piperidin-1-yl)eth-yl]benzamide monohydrate.

Authors:  B K Revathi; D Reuben Jonathan; S Sathya; K Prathebha; G Usha
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-30

7.  Crystal structure of 4-chloro-N-[2-(piperidin-1-yl)eth-yl]benzamide monohydrate.

Authors:  K Prathebha; D Reuben Jonathan; B K Revathi; S Sathya; G Usha
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01

8.  N-[(1-Benzoyl-piperidin-4-yl)meth-yl]benzamide.

Authors:  K Prathebha; D Reuben Jonathan; Sathya Shanmugam; G Usha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-14
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