Literature DB >> 25995948

Crystal structure of 4-methyl-N-[2-(piperidin-1-yl)eth-yl]benzamide monohydrate.

B K Revathi1, D Reuben Jonathan2, S Sathya1, K Prathebha1, G Usha1.   

Abstract

In the title compound, C15H22N2O·H2O, the dihedral angle between the planes of the piperidine and benzene rings is 31.63 (1)°. The piperidine ring adopts a chair conformation. The water solvent mol-ecule is involved in inter-species O-H⋯O, O-H⋯N, N-H⋯O and weak C-H⋯O hydrogen-bonding inter-actions, giving rise to chains extending along [010].

Entities:  

Keywords:  benzamide; crystal structure; hydrogen bonding; piperidine

Year:  2015        PMID: 25995948      PMCID: PMC4420061          DOI: 10.1107/S2056989015007653

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of piperidine and benzamide derivatives, see: Ramalingan et al. (2004 ▸); Sargent & May (1970 ▸); Magar et al. (2010 ▸); Fun et al. (2011 ▸); Haffner et al. (2010 ▸); Lavanya et al. (2010 ▸). For related structures, see: Ávila et al. (2010 ▸); Prathebha et al. (2014 ▸, 2015 ▸); Al-abbasi et al. (2010 ▸). For the synthesis, see: Prathebha et al. (2014 ▸, 2015 ▸).

Experimental

Crystal data

C15H22N2O·H2O M = 264.36 Monoclinic, a = 14.8504 (17) Å b = 6.8243 (6) Å c = 15.0070 (18) Å β = 98.653 (4)° V = 1503.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.24 × 0.22 × 0.22 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▸) T min = 0.980, T max = 0.986 25938 measured reflections 3735 independent reflections 2311 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.203 S = 1.11 3688 reflections 181 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.22 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: APEX2 and SAINT (Bruker, 2004 ▸); data reduction: SAINT and XPREP (Bruker, 2004 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015007653/zs2330sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007653/zs2330Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015007653/zs2330Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015007653/zs2330fig1.tif The mol­ecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015007653/zs2330fig2.tif The packing of the mol­ecules in the crystal structure. The dashed lines indicate hydrogen bonds. CCDC reference: 1054604 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H22N2O·H2OF(000) = 576
Mr = 264.36Dx = 1.168 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.8504 (17) Åθ = 1.4–28.3°
b = 6.8243 (6) ŵ = 0.08 mm1
c = 15.0070 (18) ÅT = 293 K
β = 98.653 (4)°Block, colourless
V = 1503.6 (3) Å30.24 × 0.22 × 0.22 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3735 independent reflections
Radiation source: fine-focus sealed tube2311 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω and φ scansθmax = 28.3°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −19→19
Tmin = 0.980, Tmax = 0.986k = −9→9
25938 measured reflectionsl = −19→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.203H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + (0.0894P)2 + 0.5035P] where P = (Fo2 + 2Fc2)/3
3688 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.34 e Å3
3 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.38752 (16)0.4342 (3)0.07521 (17)0.0542 (6)
H1A0.39390.42740.01190.065*
H1B0.43380.52270.10460.065*
C20.29416 (17)0.5141 (4)0.08428 (19)0.0636 (7)
H2A0.28960.53200.14760.076*
H2B0.28610.64080.05490.076*
C30.22041 (17)0.3770 (4)0.04252 (19)0.0665 (7)
H3A0.16190.42290.05530.080*
H3B0.21860.3751−0.02240.080*
C40.23786 (17)0.1739 (4)0.0794 (2)0.0657 (7)
H4A0.23030.17240.14250.079*
H4B0.19360.08450.04730.079*
C50.33188 (17)0.1055 (4)0.0704 (2)0.0635 (7)
H5A0.3415−0.02410.09660.076*
H5B0.33770.09610.00700.076*
C60.49185 (15)0.1599 (4)0.10743 (17)0.0541 (6)
H6A0.50520.18550.04720.065*
H6B0.49090.01900.11560.065*
C70.56594 (14)0.2458 (4)0.17469 (18)0.0558 (6)
H7A0.57000.38570.16460.067*
H7B0.55190.22590.23510.067*
C80.72909 (13)0.2522 (3)0.16379 (13)0.0409 (5)
C90.81183 (13)0.1325 (3)0.15644 (13)0.0386 (4)
C100.82043 (14)−0.0617 (3)0.18282 (15)0.0471 (5)
H100.7727−0.12310.20540.057*
C110.89864 (15)−0.1651 (3)0.17615 (16)0.0517 (6)
H110.9028−0.29540.19450.062*
C120.97060 (14)−0.0808 (4)0.14315 (14)0.0500 (5)
C130.96249 (15)0.1133 (4)0.11755 (16)0.0553 (6)
H131.01040.17390.09490.066*
C140.88495 (15)0.2194 (3)0.12477 (15)0.0500 (5)
H140.88180.35090.10820.060*
C151.05545 (18)−0.1956 (5)0.1353 (2)0.0762 (8)
H15A1.0492−0.32650.15710.114*
H15B1.1069−0.13340.17060.114*
H15C1.0645−0.20020.07340.114*
N10.40171 (11)0.2394 (2)0.11529 (12)0.0452 (4)
N20.65238 (11)0.1538 (3)0.16645 (13)0.0497 (5)
H20.65400.02810.16310.060*
O10.73327 (11)0.4323 (2)0.16610 (13)0.0613 (5)
O1W0.61401 (11)−0.2569 (2)0.19557 (13)0.0553 (5)
H1W0.6502 (18)−0.350 (4)0.189 (2)0.090 (10)*
H2W0.611 (2)−0.259 (5)0.2514 (13)0.116 (14)*
U11U22U33U12U13U23
C10.0519 (13)0.0525 (13)0.0580 (13)−0.0099 (10)0.0078 (10)0.0021 (10)
C20.0657 (16)0.0500 (13)0.0732 (16)0.0106 (12)0.0042 (12)0.0045 (12)
C30.0461 (14)0.0774 (17)0.0734 (17)0.0080 (12)0.0002 (11)−0.0027 (14)
C40.0479 (14)0.0703 (16)0.0779 (17)−0.0168 (12)0.0061 (12)−0.0064 (14)
C50.0588 (15)0.0482 (13)0.0813 (18)−0.0057 (11)0.0028 (12)−0.0127 (12)
C60.0449 (12)0.0551 (13)0.0632 (14)0.0039 (10)0.0108 (10)−0.0128 (11)
C70.0366 (11)0.0558 (13)0.0760 (16)0.0008 (10)0.0114 (10)−0.0201 (12)
C80.0398 (11)0.0414 (10)0.0423 (10)0.0025 (8)0.0088 (8)0.0009 (8)
C90.0353 (10)0.0412 (10)0.0400 (10)−0.0013 (8)0.0078 (8)−0.0015 (8)
C100.0385 (11)0.0454 (11)0.0584 (13)−0.0032 (9)0.0107 (9)0.0045 (9)
C110.0467 (12)0.0446 (12)0.0631 (14)0.0061 (10)0.0059 (10)0.0037 (10)
C120.0396 (11)0.0662 (14)0.0441 (11)0.0117 (10)0.0060 (9)0.0054 (10)
C130.0383 (11)0.0726 (15)0.0579 (13)0.0011 (10)0.0164 (9)0.0152 (11)
C140.0462 (12)0.0475 (11)0.0581 (13)−0.0004 (10)0.0140 (10)0.0111 (10)
C150.0564 (16)0.103 (2)0.0723 (17)0.0339 (15)0.0197 (13)0.0177 (16)
N10.0375 (9)0.0439 (9)0.0546 (10)0.0010 (7)0.0085 (7)−0.0041 (8)
N20.0355 (9)0.0418 (9)0.0729 (12)0.0023 (7)0.0118 (8)−0.0075 (9)
O10.0545 (10)0.0403 (8)0.0941 (13)0.0015 (7)0.0270 (9)−0.0002 (8)
O1W0.0542 (10)0.0416 (9)0.0731 (13)0.0003 (7)0.0194 (8)−0.0004 (8)
C1—N11.461 (3)C7—H7B0.9700
C1—C21.515 (3)C8—O11.231 (2)
C1—H1A0.9700C8—N21.328 (3)
C1—H1B0.9700C8—C91.493 (3)
C2—C31.504 (4)C9—C141.383 (3)
C2—H2A0.9700C9—C101.383 (3)
C2—H2B0.9700C10—C111.376 (3)
C3—C41.501 (4)C10—H100.9300
C3—H3A0.9700C11—C121.370 (3)
C3—H3B0.9700C11—H110.9300
C4—C51.498 (3)C12—C131.379 (3)
C4—H4A0.9700C12—C151.503 (3)
C4—H4B0.9700C13—C141.378 (3)
C5—N11.468 (3)C13—H130.9300
C5—H5A0.9700C14—H140.9300
C5—H5B0.9700C15—H15A0.9600
C6—N11.465 (3)C15—H15B0.9600
C6—C71.496 (3)C15—H15C0.9600
C6—H6A0.9700N2—H20.8600
C6—H6B0.9700O1W—H1W0.849 (17)
C7—N21.451 (3)O1W—H2W0.845 (18)
C7—H7A0.9700
N1—C1—C2111.57 (19)C6—C7—H7A109.6
N1—C1—H1A109.3N2—C7—H7B109.6
C2—C1—H1A109.3C6—C7—H7B109.6
N1—C1—H1B109.3H7A—C7—H7B108.2
C2—C1—H1B109.3O1—C8—N2122.92 (18)
H1A—C1—H1B108.0O1—C8—C9120.65 (18)
C3—C2—C1111.0 (2)N2—C8—C9116.43 (17)
C3—C2—H2A109.4C14—C9—C10117.78 (18)
C1—C2—H2A109.4C14—C9—C8119.21 (18)
C3—C2—H2B109.4C10—C9—C8122.98 (17)
C1—C2—H2B109.4C11—C10—C9120.89 (19)
H2A—C2—H2B108.0C11—C10—H10119.6
C4—C3—C2110.3 (2)C9—C10—H10119.6
C4—C3—H3A109.6C12—C11—C10121.6 (2)
C2—C3—H3A109.6C12—C11—H11119.2
C4—C3—H3B109.6C10—C11—H11119.2
C2—C3—H3B109.6C11—C12—C13117.63 (19)
H3A—C3—H3B108.1C11—C12—C15121.2 (2)
C5—C4—C3111.5 (2)C13—C12—C15121.2 (2)
C5—C4—H4A109.3C14—C13—C12121.4 (2)
C3—C4—H4A109.3C14—C13—H13119.3
C5—C4—H4B109.3C12—C13—H13119.3
C3—C4—H4B109.3C13—C14—C9120.7 (2)
H4A—C4—H4B108.0C13—C14—H14119.7
N1—C5—C4111.6 (2)C9—C14—H14119.7
N1—C5—H5A109.3C12—C15—H15A109.5
C4—C5—H5A109.3C12—C15—H15B109.5
N1—C5—H5B109.3H15A—C15—H15B109.5
C4—C5—H5B109.3C12—C15—H15C109.5
H5A—C5—H5B108.0H15A—C15—H15C109.5
N1—C6—C7112.87 (18)H15B—C15—H15C109.5
N1—C6—H6A109.0C1—N1—C6112.36 (18)
C7—C6—H6A109.0C1—N1—C5109.23 (18)
N1—C6—H6B109.0C6—N1—C5108.86 (17)
C7—C6—H6B109.0C8—N2—C7123.92 (18)
H6A—C6—H6B107.8C8—N2—H2118.0
N2—C7—C6110.08 (18)C7—N2—H2118.0
N2—C7—H7A109.6H1W—O1W—H2W103 (2)
N1—C1—C2—C3−56.8 (3)C11—C12—C13—C140.0 (3)
C1—C2—C3—C452.5 (3)C15—C12—C13—C14−179.8 (2)
C2—C3—C4—C5−53.0 (3)C12—C13—C14—C9−1.3 (4)
C3—C4—C5—N157.1 (3)C10—C9—C14—C131.8 (3)
N1—C6—C7—N2177.01 (19)C8—C9—C14—C13179.7 (2)
O1—C8—C9—C14−19.8 (3)C2—C1—N1—C6−179.81 (19)
N2—C8—C9—C14159.4 (2)C2—C1—N1—C559.3 (3)
O1—C8—C9—C10157.9 (2)C7—C6—N1—C177.8 (3)
N2—C8—C9—C10−22.9 (3)C7—C6—N1—C5−161.1 (2)
C14—C9—C10—C11−1.1 (3)C4—C5—N1—C1−59.5 (3)
C8—C9—C10—C11−178.91 (19)C4—C5—N1—C6177.5 (2)
C9—C10—C11—C12−0.1 (3)O1—C8—N2—C7−1.7 (3)
C10—C11—C12—C130.7 (3)C9—C8—N2—C7179.16 (19)
C10—C11—C12—C15−179.4 (2)C6—C7—N2—C8133.2 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O1i0.85 (2)1.99 (2)2.840 (2)177 (3)
O1W—H2W···N1ii0.85 (2)2.04 (2)2.883 (3)177 (3)
N2—H2···O1W0.862.112.906 (2)153
C7—H7A···O1Wiii0.972.553.472 (3)159
C7—H7A···O10.972.442.812 (3)102
C10—H10···O1W0.932.513.374 (3)154
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1WH1WO1i 0.85(2)1.99(2)2.840(2)177(3)
O1WH2WN1ii 0.85(2)2.04(2)2.883(3)177(3)
N2H2O1W 0.862.112.906(2)153
C7H7AO1W iii 0.972.553.472(3)159
C10H10O1W 0.932.513.374(3)154

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  Substituted N-{3-[(1,1-dioxido-1,2-benzothiazol-3-yl)(phenyl)amino]propyl}benzamide analogs as potent Kv1.3 ion channel blockers. Part 2.

Authors:  Curt D Haffner; Stephen A Thomson; Yu Guo; Kimberly Petrov; Andrew Larkin; Pierette Banker; Gregory Schaaf; Scott Dickerson; Jeff Gobel; Dan Gillie; J Patrick Condreay; Chuck Poole; Tiffany Carpenter; John Ulrich
Journal:  Bioorg Med Chem Lett       Date:  2010-10-23       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Agonists--antagonists derived from desomorphine and metopon.

Authors:  L J Sargent; E L May
Journal:  J Med Chem       Date:  1970-11       Impact factor: 7.446

4.  Synthesis and study of antibacterial and antifungal activities of novel 1-[2-(benzoxazol-2-yl)ethoxy]- 2,6-diarylpiperidin-4-ones.

Authors:  C Ramalingan; S Balasubramanian; S Kabilan; M Vasudevan
Journal:  Eur J Med Chem       Date:  2004-06       Impact factor: 6.514

5.  N-[(Piperidin-1-yl)carbothioyl]benz-amide.

Authors:  Aisha A Al-Abbasi; Mohd Ambar Yarmo; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

6.  Methyl 4-(piperidin-1-ylcarbon-yl)benzoate.

Authors:  R M D Avila; I M R Landre; T E Souza; M P Veloso; A C Doriguetto
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

7.  N-(2-Oxo-2-phenyl-acet-yl)benzamide.

Authors:  Hoong-Kun Fun; Jia Hao Goh; Dongdong Wu; Yan Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18

8.  N-[(1-Benzoyl-piperidin-4-yl)meth-yl]benzamide.

Authors:  K Prathebha; D Reuben Jonathan; Sathya Shanmugam; G Usha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-14
  8 in total

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