Literature DB >> 21837207

1-Ethyl-1-methyl-3-(2-nitro-benzo-yl)thio-urea.

Aisha A Al-Abbasi, Mohammad B Kassim.   

Abstract

In the title compound, C(11)H(13)N(3)O(3)S, the benzene ring is twisted relative to the amidic fragment, forming a dihedral angle of 27.26 (9)°. The thiono and carbonyl groups are trans with respect to the C-N bond. Inter-molecular N-H⋯S and C-H⋯O hydrogen bonds link the mol-ecules in the crystal structure.

Entities:  

Year:  2011        PMID: 21837207      PMCID: PMC3152072          DOI: 10.1107/S1600536811024652

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Al-abbasi et al. (2010 ▶). For related structures and background references, see: Shanmuga Sundara Raj et al. (1999 ▶); Arslan et al. (2003 ▶); Al-abbasi & Kassim (2011 ▶). For standard bond lengths, see: Allen et al. (1987 ▶) and for bond lengths in other substituted thio­ureas, see: Nasir et al. (2011 ▶); Pérez et al. (2011 ▶).

Experimental

Crystal data

C11H13N3O3S M = 267.30 Monoclinic, a = 11.447 (2) Å b = 7.8664 (15) Å c = 15.159 (3) Å β = 107.128 (4)° V = 1304.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 298 K 0.55 × 0.38 × 0.21 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.874, T max = 0.949 7105 measured reflections 2294 independent reflections 1971 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.124 S = 1.06 2294 reflections 169 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024652/jh2299sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024652/jh2299Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024652/jh2299Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13N3O3SF(000) = 560
Mr = 267.30Dx = 1.361 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4015 reflections
a = 11.447 (2) Åθ = 2.0–25.0°
b = 7.8664 (15) ŵ = 0.25 mm1
c = 15.159 (3) ÅT = 298 K
β = 107.128 (4)°Block, brown
V = 1304.5 (4) Å30.55 × 0.38 × 0.21 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2294 independent reflections
Radiation source: fine-focus sealed tube1971 reflections with I > 2σ(I)
graphiteRint = 0.020
ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −13→13
Tmin = 0.874, Tmax = 0.949k = −7→9
7105 measured reflectionsl = −15→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.065P)2 + 0.531P] where P = (Fo2 + 2Fc2)/3
2294 reflections(Δ/σ)max < 0.001
169 parametersΔρmax = 0.33 e Å3
1 restraintΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.69163 (5)0.06431 (8)0.07382 (4)0.0575 (2)
O10.49702 (13)0.2128 (2)0.24893 (10)0.0608 (4)
O20.44396 (18)−0.1541 (2)0.17973 (16)0.0811 (6)
O30.2858 (2)−0.3156 (2)0.14610 (17)0.0984 (7)
N10.48480 (14)0.1814 (2)0.09706 (11)0.0435 (4)
N20.65025 (15)0.3643 (2)0.14053 (13)0.0528 (5)
N30.3344 (2)−0.1771 (2)0.15678 (14)0.0612 (5)
C10.30487 (17)0.1334 (2)0.14682 (13)0.0401 (4)
C20.25371 (19)−0.0265 (3)0.14295 (14)0.0459 (5)
C30.1301 (2)−0.0513 (4)0.12710 (16)0.0636 (7)
H30.0984−0.16040.12580.076*
C40.0545 (2)0.0879 (4)0.11328 (18)0.0731 (8)
H4−0.02910.07350.10260.088*
C50.1024 (2)0.2479 (4)0.11526 (19)0.0728 (8)
H50.05070.34180.10500.087*
C60.2264 (2)0.2709 (3)0.13230 (16)0.0558 (6)
H60.25770.38030.13410.067*
C70.43942 (17)0.1743 (2)0.17127 (14)0.0433 (5)
C80.60936 (17)0.2138 (3)0.10694 (13)0.0441 (5)
C90.7795 (2)0.4114 (3)0.16004 (17)0.0607 (6)
H9A0.82920.30930.17100.073*
H9B0.80390.48010.21560.073*
C100.8020 (3)0.5099 (4)0.0808 (2)0.0793 (8)
H10A0.78970.43660.02820.119*
H10B0.88440.55180.09870.119*
H10C0.74610.60380.06510.119*
C110.5729 (2)0.5026 (3)0.1556 (2)0.0737 (8)
H11A0.49050.48530.11750.111*
H11B0.60280.60900.14000.111*
H11C0.57470.50420.21930.111*
H1A0.4498 (18)0.123 (3)0.0494 (11)0.051 (6)*
U11U22U33U12U13U23
S10.0395 (3)0.0708 (4)0.0647 (4)0.0004 (2)0.0194 (3)−0.0241 (3)
O10.0506 (9)0.0857 (12)0.0461 (9)−0.0004 (8)0.0142 (7)−0.0123 (8)
O20.0695 (12)0.0584 (11)0.1181 (16)0.0213 (9)0.0318 (11)0.0114 (10)
O30.134 (2)0.0423 (10)0.1218 (18)−0.0117 (11)0.0429 (15)−0.0064 (10)
N10.0362 (8)0.0513 (10)0.0453 (9)−0.0046 (7)0.0156 (7)−0.0126 (8)
N20.0415 (9)0.0572 (11)0.0618 (11)−0.0084 (8)0.0185 (8)−0.0138 (9)
N30.0866 (15)0.0377 (10)0.0639 (12)0.0017 (10)0.0295 (11)0.0017 (8)
C10.0402 (10)0.0417 (10)0.0428 (10)0.0035 (8)0.0190 (8)−0.0007 (8)
C20.0504 (11)0.0470 (11)0.0449 (11)0.0001 (9)0.0209 (9)0.0002 (8)
C30.0608 (14)0.0764 (17)0.0602 (14)−0.0244 (13)0.0279 (12)−0.0070 (12)
C40.0389 (12)0.118 (2)0.0658 (16)−0.0025 (14)0.0213 (11)−0.0029 (15)
C50.0510 (14)0.090 (2)0.0805 (18)0.0280 (14)0.0242 (12)0.0086 (14)
C60.0536 (12)0.0485 (12)0.0698 (14)0.0113 (10)0.0252 (11)0.0041 (10)
C70.0405 (10)0.0429 (11)0.0497 (11)0.0049 (8)0.0181 (9)−0.0035 (8)
C80.0367 (10)0.0560 (12)0.0400 (10)−0.0039 (9)0.0122 (8)−0.0071 (8)
C90.0448 (12)0.0725 (15)0.0638 (14)−0.0165 (11)0.0145 (10)−0.0187 (12)
C100.0656 (16)0.0856 (19)0.090 (2)−0.0134 (14)0.0287 (14)−0.0004 (16)
C110.0675 (16)0.0533 (14)0.107 (2)−0.0033 (12)0.0356 (15)−0.0200 (14)
S1—C81.674 (2)C3—H30.9300
O1—C71.206 (2)C4—C51.370 (4)
O2—N31.212 (3)C4—H40.9300
O3—N31.212 (3)C5—C61.378 (3)
N1—C71.372 (2)C5—H50.9300
N1—C81.412 (2)C6—H60.9300
N1—H1A0.849 (10)C9—C101.514 (4)
N2—C81.319 (3)C9—H9A0.9700
N2—C111.462 (3)C9—H9B0.9700
N2—C91.469 (3)C10—H10A0.9600
N3—C21.479 (3)C10—H10B0.9600
C1—C21.381 (3)C10—H10C0.9600
C1—C61.382 (3)C11—H11A0.9600
C1—C71.509 (3)C11—H11B0.9600
C2—C31.378 (3)C11—H11C0.9600
C3—C41.372 (4)
C7—N1—C8122.31 (16)C1—C6—H6119.6
C7—N1—H1A118.6 (15)O1—C7—N1124.04 (18)
C8—N1—H1A113.3 (15)O1—C7—C1121.22 (17)
C8—N2—C11124.45 (18)N1—C7—C1114.38 (17)
C8—N2—C9121.75 (18)N2—C8—N1115.81 (17)
C11—N2—C9113.66 (19)N2—C8—S1125.42 (15)
O3—N3—O2124.6 (2)N1—C8—S1118.75 (15)
O3—N3—C2117.3 (2)N2—C9—C10111.5 (2)
O2—N3—C2118.12 (18)N2—C9—H9A109.3
C2—C1—C6117.29 (18)C10—C9—H9A109.3
C2—C1—C7126.44 (17)N2—C9—H9B109.3
C6—C1—C7116.16 (18)C10—C9—H9B109.3
C3—C2—C1122.5 (2)H9A—C9—H9B108.0
C3—C2—N3118.5 (2)C9—C10—H10A109.5
C1—C2—N3118.97 (18)C9—C10—H10B109.5
C4—C3—C2118.9 (2)H10A—C10—H10B109.5
C4—C3—H3120.6C9—C10—H10C109.5
C2—C3—H3120.6H10A—C10—H10C109.5
C5—C4—C3120.0 (2)H10B—C10—H10C109.5
C5—C4—H4120.0N2—C11—H11A109.5
C3—C4—H4120.0N2—C11—H11B109.5
C4—C5—C6120.5 (2)H11A—C11—H11B109.5
C4—C5—H5119.8N2—C11—H11C109.5
C6—C5—H5119.8H11A—C11—H11C109.5
C5—C6—C1120.9 (2)H11B—C11—H11C109.5
C5—C6—H6119.6
C6—C1—C2—C3−1.2 (3)C8—N1—C7—O18.5 (3)
C7—C1—C2—C3174.71 (19)C8—N1—C7—C1−178.37 (17)
C6—C1—C2—N3179.13 (19)C2—C1—C7—O1−95.5 (3)
C7—C1—C2—N3−5.0 (3)C6—C1—C7—O180.5 (3)
O3—N3—C2—C35.7 (3)C2—C1—C7—N191.2 (2)
O2—N3—C2—C3−172.8 (2)C6—C1—C7—N1−92.9 (2)
O3—N3—C2—C1−174.6 (2)C11—N2—C8—N1−8.5 (3)
O2—N3—C2—C16.9 (3)C9—N2—C8—N1176.06 (19)
C1—C2—C3—C41.0 (3)C11—N2—C8—S1170.1 (2)
N3—C2—C3—C4−179.3 (2)C9—N2—C8—S1−5.4 (3)
C2—C3—C4—C50.1 (4)C7—N1—C8—N2−63.8 (3)
C3—C4—C5—C6−0.9 (4)C7—N1—C8—S1117.53 (18)
C4—C5—C6—C10.6 (4)C8—N2—C9—C1096.1 (3)
C2—C1—C6—C50.4 (3)C11—N2—C9—C10−79.8 (3)
C7—C1—C6—C5−175.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···S1i0.85 (2)2.55 (2)3.3828 (18)167.(2)
C6—H6···O3ii0.932.413.317 (3)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯S1i0.85 (2)2.55 (2)3.3828 (18)167 (2)
C6—H6⋯O3ii0.932.413.317 (3)164

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Bromo-N-(dibenzyl-carbamothioyl)benzamide.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

3.  N-[(Piperidin-1-yl)carbothioyl]benz-amide.

Authors:  Aisha A Al-Abbasi; Mohd Ambar Yarmo; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

4.  N-Benzoyl-N',N'-dimethyl-thio-urea.

Authors:  Hiram Pérez; Rodrigo S Corrêa; Ana María Plutín; Anislay Alvarez; Yvonne Mascarenhas
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-16

5.  1-Benzoyl-3-ethyl-3-phenyl-thio-urea.

Authors:  Aisha A Al-Abbasi; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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