Literature DB >> 25705496

Crystal structure of 4-chloro-N-[2-(piperidin-1-yl)eth-yl]benzamide monohydrate.

K Prathebha1, D Reuben Jonathan2, B K Revathi1, S Sathya1, G Usha1.   

Abstract

In the title compound, C14H19ClN2O2·H2O, the piperdine ring adopts a chair conformation. The dihedral angle between the mean plane of the piperidine ring and that of the phenyl ring is 41.64 (1)°. In the crystal, mol-ecules are linked by O-H⋯N, N-H⋯O and C-H⋯O hydrogen bonds involving the water mol-ecule, forming double-stranded chains propagating along [010].

Entities:  

Keywords:  benzamide; crystal structure; hydrogen bonding; monohydrate; piperidine

Year:  2015        PMID: 25705496      PMCID: PMC4331843          DOI: 10.1107/S2056989014026851

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis of the title compound, see: Prathebha et al. (2013 ▸, 2014 ▸). For the biological activities of piperdine derivatives, see: Pandey & Chawla (2012 ▸); Jayalakshmi & Nanjundan (2008 ▸); Parthiban et al. (2005 ▸); Aridoss et al. (2008 ▸); Ramachandran et al. (2011 ▸). For related structures, see: Prathebha et al. (2014 ▸); Ávila et al. (2010 ▸); Al-abbasi et al. (2010 ▸).

Experimental

Crystal data

C14H19ClN2O·H2O M = 284.78 Monoclinic, a = 14.9115 (6) Å b = 6.6899 (3) Å c = 15.6215 (7) Å β = 102.956 (2)° V = 1518.67 (11) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 293 K 0.25 × 0.23 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▸) T min = 0.939, T max = 0.951 12566 measured reflections 3780 independent reflections 1953 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.160 S = 1.01 3780 reflections 181 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2004 ▸); data reduction: XPREP in SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989014026851/su5034sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014026851/su5034Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014026851/su5034Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014026851/su5034fig1.tif The mol­ecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989014026851/su5034fig2.tif A view along the b axis of the crystal packing of the title compound. The dashed lines indicate the hydrogen bonds (see Table 1 for details; C-bound H atoms have been omitted for clarity). CCDC reference: 1038084 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H19ClN2O·H2OF(000) = 608
Mr = 284.78Dx = 1.245 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3780 reflections
a = 14.9115 (6) Åθ = 1.7–28.4°
b = 6.6899 (3) ŵ = 0.25 mm1
c = 15.6215 (7) ÅT = 293 K
β = 102.956 (2)°Block, colourless
V = 1518.67 (11) Å30.25 × 0.23 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3780 independent reflections
Radiation source: fine-focus sealed tube1953 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
ω and φ scanθmax = 28.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −19→19
Tmin = 0.939, Tmax = 0.951k = −8→7
12566 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0714P)2 + 0.2535P] where P = (Fo2 + 2Fc2)/3
3780 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.28 e Å3
2 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1W0.36430 (12)−0.0064 (2)0.33083 (13)0.0544 (4)
H1WA0.3601 (17)−0.005 (4)0.2772 (11)0.062 (8)*
H1WB0.3987 (15)0.082 (3)0.3533 (15)0.064 (8)*
C10.13069 (15)−0.6539 (4)0.39904 (16)0.0561 (6)
H1A0.1347−0.62400.46050.067*
H1B0.1773−0.75280.39570.067*
C20.03637 (15)−0.7388 (4)0.35887 (18)0.0671 (7)
H2A0.0342−0.77950.29880.081*
H2B0.0257−0.85630.39160.081*
C3−0.03859 (16)−0.5866 (4)0.35964 (18)0.0682 (7)
H3A−0.0428−0.56050.41970.082*
H3B−0.0973−0.63900.32790.082*
C4−0.01743 (15)−0.3941 (4)0.31710 (18)0.0665 (7)
H4A−0.0223−0.41630.25490.080*
H4B−0.0621−0.29300.32340.080*
C50.07842 (15)−0.3203 (4)0.35883 (17)0.0610 (7)
H5A0.0910−0.19940.32930.073*
H5B0.0817−0.28780.42000.073*
C60.24037 (14)−0.3914 (3)0.38842 (15)0.0508 (6)
H6A0.2500−0.37800.45170.061*
H6B0.2448−0.25930.36410.061*
C70.31449 (13)−0.5225 (3)0.36732 (16)0.0511 (6)
H7A0.3226−0.63930.40510.061*
H7B0.2961−0.56780.30690.061*
C80.48147 (13)−0.5074 (3)0.38619 (13)0.0411 (5)
C90.56372 (13)−0.3766 (3)0.39205 (13)0.0405 (5)
C100.63653 (15)−0.4479 (4)0.35953 (15)0.0530 (6)
H100.6343−0.57690.33700.064*
C110.71251 (15)−0.3293 (4)0.36017 (16)0.0633 (7)
H110.7610−0.37730.33770.076*
C120.71562 (14)−0.1406 (4)0.39423 (16)0.0552 (6)
C130.64543 (15)−0.0669 (4)0.42879 (15)0.0541 (6)
H130.64910.06070.45290.065*
C140.56919 (14)−0.1860 (3)0.42700 (14)0.0479 (5)
H140.5209−0.13710.44970.058*
N10.14836 (11)−0.4716 (2)0.35340 (11)0.0435 (4)
N20.40087 (11)−0.4147 (3)0.37969 (11)0.0480 (5)
H20.4002−0.28640.38300.058*
O10.48880 (10)−0.6908 (2)0.38625 (10)0.0573 (4)
Cl10.81091 (5)0.01012 (12)0.39483 (6)0.0952 (3)
U11U22U33U12U13U23
O1W0.0567 (10)0.0380 (10)0.0677 (12)−0.0102 (8)0.0123 (9)0.0000 (9)
C10.0484 (13)0.0450 (14)0.0746 (15)−0.0061 (11)0.0129 (11)0.0122 (12)
C20.0503 (14)0.0549 (16)0.0971 (19)−0.0147 (12)0.0184 (13)0.0019 (14)
C30.0445 (13)0.0754 (19)0.0887 (18)−0.0116 (13)0.0234 (12)−0.0014 (15)
C40.0427 (13)0.0672 (18)0.0939 (18)0.0093 (12)0.0244 (12)0.0050 (15)
C50.0478 (13)0.0479 (15)0.0937 (18)0.0037 (11)0.0297 (12)−0.0020 (13)
C60.0437 (12)0.0424 (13)0.0682 (14)−0.0064 (10)0.0164 (10)−0.0050 (11)
C70.0364 (11)0.0373 (13)0.0779 (15)−0.0021 (9)0.0091 (10)−0.0042 (11)
C80.0383 (11)0.0353 (12)0.0482 (12)−0.0031 (9)0.0067 (8)−0.0020 (9)
C90.0365 (10)0.0375 (12)0.0456 (11)−0.0029 (9)0.0049 (8)0.0003 (9)
C100.0440 (12)0.0439 (13)0.0720 (15)−0.0020 (10)0.0150 (11)−0.0097 (11)
C110.0442 (13)0.0648 (18)0.0857 (18)−0.0042 (12)0.0247 (12)−0.0076 (14)
C120.0413 (12)0.0530 (16)0.0710 (15)−0.0140 (10)0.0121 (11)0.0048 (12)
C130.0495 (13)0.0394 (13)0.0718 (15)−0.0083 (10)0.0102 (11)−0.0057 (11)
C140.0397 (11)0.0420 (13)0.0628 (14)−0.0029 (9)0.0129 (10)−0.0057 (11)
N10.0361 (9)0.0344 (10)0.0610 (11)−0.0010 (7)0.0132 (8)0.0014 (8)
N20.0360 (9)0.0314 (10)0.0751 (12)−0.0035 (7)0.0094 (8)−0.0013 (9)
O10.0493 (9)0.0342 (10)0.0869 (11)−0.0040 (7)0.0124 (8)−0.0050 (8)
Cl10.0650 (5)0.0851 (6)0.1438 (8)−0.0346 (4)0.0410 (5)−0.0043 (5)
O1W—H1WA0.826 (16)C6—H6A0.9700
O1W—H1WB0.808 (16)C6—H6B0.9700
C1—N11.466 (3)C7—N21.451 (2)
C1—C21.516 (3)C7—H7A0.9700
C1—H1A0.9700C7—H7B0.9700
C1—H1B0.9700C8—O11.231 (2)
C2—C31.514 (3)C8—N21.336 (2)
C2—H2A0.9700C8—C91.493 (3)
C2—H2B0.9700C9—C101.383 (3)
C3—C41.515 (4)C9—C141.382 (3)
C3—H3A0.9700C10—C111.381 (3)
C3—H3B0.9700C10—H100.9300
C4—C51.514 (3)C11—C121.366 (3)
C4—H4A0.9700C11—H110.9300
C4—H4B0.9700C12—C131.372 (3)
C5—N11.469 (3)C12—Cl11.741 (2)
C5—H5A0.9700C13—C141.383 (3)
C5—H5B0.9700C13—H130.9300
C6—N11.460 (3)C14—H140.9300
C6—C71.504 (3)N2—H20.8600
H1WA—O1W—H1WB109 (2)C7—C6—H6B109.2
N1—C1—C2111.19 (19)H6A—C6—H6B107.9
N1—C1—H1A109.4N2—C7—C6110.77 (17)
C2—C1—H1A109.4N2—C7—H7A109.5
N1—C1—H1B109.4C6—C7—H7A109.5
C2—C1—H1B109.4N2—C7—H7B109.5
H1A—C1—H1B108.0C6—C7—H7B109.5
C3—C2—C1111.3 (2)H7A—C7—H7B108.1
C3—C2—H2A109.4O1—C8—N2122.74 (18)
C1—C2—H2A109.4O1—C8—C9120.83 (18)
C3—C2—H2B109.4N2—C8—C9116.42 (18)
C1—C2—H2B109.4C10—C9—C14118.80 (18)
H2A—C2—H2B108.0C10—C9—C8118.50 (18)
C2—C3—C4109.98 (18)C14—C9—C8122.69 (18)
C2—C3—H3A109.7C11—C10—C9120.6 (2)
C4—C3—H3A109.7C11—C10—H10119.7
C2—C3—H3B109.7C9—C10—H10119.7
C4—C3—H3B109.7C12—C11—C10119.3 (2)
H3A—C3—H3B108.2C12—C11—H11120.3
C5—C4—C3110.9 (2)C10—C11—H11120.3
C5—C4—H4A109.4C11—C12—C13121.5 (2)
C3—C4—H4A109.4C11—C12—Cl1119.58 (18)
C5—C4—H4B109.4C13—C12—Cl1118.89 (19)
C3—C4—H4B109.4C12—C13—C14118.7 (2)
H4A—C4—H4B108.0C12—C13—H13120.6
N1—C5—C4111.4 (2)C14—C13—H13120.6
N1—C5—H5A109.4C9—C14—C13120.98 (19)
C4—C5—H5A109.4C9—C14—H14119.5
N1—C5—H5B109.4C13—C14—H14119.5
C4—C5—H5B109.4C6—N1—C1112.30 (17)
H5A—C5—H5B108.0C6—N1—C5110.17 (17)
N1—C6—C7112.24 (17)C1—N1—C5109.74 (16)
N1—C6—H6A109.2C8—N2—C7122.38 (17)
C7—C6—H6A109.2C8—N2—H2118.8
N1—C6—H6B109.2C7—N2—H2118.8
N1—C1—C2—C3−57.0 (3)C11—C12—C13—C14−1.4 (4)
C1—C2—C3—C453.1 (3)Cl1—C12—C13—C14179.04 (17)
C2—C3—C4—C5−53.1 (3)C10—C9—C14—C130.7 (3)
C3—C4—C5—N157.3 (3)C8—C9—C14—C13−178.0 (2)
N1—C6—C7—N2163.46 (18)C12—C13—C14—C90.7 (3)
O1—C8—C9—C1028.2 (3)C7—C6—N1—C169.4 (2)
N2—C8—C9—C10−150.8 (2)C7—C6—N1—C5−167.94 (19)
O1—C8—C9—C14−153.1 (2)C2—C1—N1—C6−177.55 (19)
N2—C8—C9—C1427.9 (3)C2—C1—N1—C559.6 (2)
C14—C9—C10—C11−1.4 (3)C4—C5—N1—C6175.98 (19)
C8—C9—C10—C11177.3 (2)C4—C5—N1—C1−59.9 (2)
C9—C10—C11—C120.7 (4)O1—C8—N2—C7−3.5 (3)
C10—C11—C12—C130.8 (4)C9—C8—N2—C7175.58 (18)
C10—C11—C12—Cl1−179.72 (18)C6—C7—N2—C8163.4 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···N1i0.83 (2)2.03 (2)2.851 (3)174 (2)
N2—H2···O1W0.862.062.855 (2)153
C6—H6B···O1W0.972.593.406 (3)142
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1WH1WAN1i 0.83(2)2.03(2)2.851(3)174(2)
N2H2O1W 0.862.062.855(2)153
C6H6BO1W 0.972.593.406(3)142

Symmetry code: (i) .

  8 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, spectral, crystal structure and in vitro antimicrobial evaluation of imidazole/benzotriazole substituted piperidin-4-one derivatives.

Authors:  R Ramachandran; M Rani; S Senthan; Yeon Tae Jeong; S Kabilan
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3.  A facile synthesis, antibacterial, and antitubercular studies of some piperidin-4-one and tetrahydropyridine derivatives.

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Journal:  Bioorg Med Chem Lett       Date:  2008-10-14       Impact factor: 2.823

4.  N-[(Piperidin-1-yl)carbothioyl]benz-amide.

Authors:  Aisha A Al-Abbasi; Mohd Ambar Yarmo; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

5.  Methyl 4-(piperidin-1-ylcarbon-yl)benzoate.

Authors:  R M D Avila; I M R Landre; T E Souza; M P Veloso; A C Doriguetto
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

7.  2-Chloro-1-(3,3-dimethyl-2,6-di-phenyl-piperidin-1-yl)ethanone.

Authors:  K Prathebha; B K Revathi; G Usha; S Ponnuswamy; S Abdul Basheer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-14

8.  N-[(1-Benzoyl-piperidin-4-yl)meth-yl]benzamide.

Authors:  K Prathebha; D Reuben Jonathan; Sathya Shanmugam; G Usha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-14
  8 in total

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