| Literature DB >> 23870758 |
Ramasamy Venkat Ragavan1, Kalavathi Murugan Kumar, Vijayaparthasarathi Vijayakumar, Sundaramoorthy Sarveswari, Sudha Ramaiah, Anand Anbarasu, Sivashanmugam Karthikeyan, Periyasamy Giridharan, Nalilu Suchetha Kumari.
Abstract
BACKGROUND: Pyrazolones are traditionally synthesized by the reaction of β-keto esters with hydrazine and its derivatives. There are methods to synthesize β-keto esters from esters and aldehydes, but these methods have main limitation in varying the substituents. Often, there are a number of methods such as acylation of enolates in which a chelating effect has been employed to lock the enolate anion using lithium and magnesium salts; however, these methods suffer from inconsistent yields in the case of aliphatic acylation. There are methods to synthesize β-keto esters from ketones like caboxylation of ketone enolates using carbon dioxide and carbon monoxide sources in the presence of palladium or transition metal catalysts. Currently, the most general and simple method to synthesize β-keto ester is the reaction of dimethyl or ethyl carbonate with ketone in the presence of strong bases which also requires long reaction time, use of excessive amount of reagent and inconsistent yield. These factors lead us to develop a simple method to synthesize β-keto esters by changing the base and reagent.Entities:
Year: 2013 PMID: 23870758 PMCID: PMC3726461 DOI: 10.1186/2191-2858-3-6
Source DB: PubMed Journal: Org Med Chem Lett ISSN: 2191-2858
Antibacterial activity of the newly synthesized compounds
| | ||||
|---|---|---|---|---|
| 21 (6.25) | 17 (6.25) | 18 (6.25) | 20 (6.25) | |
| 20 (6.25) | 18 (6.25) | 19 (6.25) | 21 (6.25) | |
| 23 (6.25) | 19 (6.25) | 20 (6.25) | 22 (6.25) | |
| 20 (6.25) | 17 (6.25) | 18 (6.25) | 19 (6.25) | |
| 16 (100) | 17 (100) | 12 (100) | 14 (100) | |
| 17 (100) | 17 (100) | 11 (100) | 15 (100) | |
| 26 (12.5) | 23 (12.5) | 21 (12.5) | 20 (12.5) | |
| 19 (100) | 23 (100) | 22 (100) | 16 (100) | |
| 26 (6.25) | 23 (6.25) | 21 (6.25) | 20 (6.25) | |
| 22 (6.25) | 18 (6.25) | 19 (6.25) | 21 (6.25) | |
| 17 (6.25) | 21 (6.25) | 20 (6.25) | 21 (6.25) | |
| 28 (12.5) | 22 (12.5) | 25 (12.5) | 23 (12.5) | |
| 29 (12.5) | 25 (12.5) | 22 (12.5) | 21 (12.5) | |
| 23 (6.25) | 20 (6.25) | 21 (6.25) | 22 (6.25) | |
| 31 (12.5) | 25 (12.5) | 27 (12.5) | 20 (12.5) | |
| 18 (6.25) | 19 (6.25) | 22 (6.25) | 20 (6.25) | |
| 24 (6.25) | 25 (6.25) | 26 (6.25) | 26 (6.25) | |
| 30 (12.5) | 24 (12.5) | 25 (12.5) | 22 (12.5) | |
| 24 (12.5) | 27 (12.5) | 24 (12.5) | 23 (12.5) | |
| 16 (100) | 17 (100) | 12 (100) | 14 (100) | |
| 21 (12.5) | 24 (12.5) | 26 (12.5) | 22 (12.5) | |
| 21 (6.25) | 23 (6.25) | 22 (6.25) | 20 (6.25) | |
| Ciprofloxacin | 23 (6.25) | 32 (6.25) | 28 (6.25) | 24 (6.25) |
Zone of inhibition (mm); MIC (μg/mL) given in parenthesis.
Antifungal activities of the newly synthesized compounds
| | ||||
|---|---|---|---|---|
| 25 (6.25) | 23 (6.25) | 26 (6.25) | 27 (6.25) | |
| 24 (6.25) | 25 (6.25) | 24 (6.25) | 26 (6.25) | |
| 29 (6.25) | 26 (6.25) | 27 (6.25) | 28 (6.25) | |
| 21 (6.25) | 22 (6.25) | 26 (6.25) | 22 (6.25) | |
| 16 (12.5) | 17 (12.5) | 12 (12.5) | 14 (12.5) | |
| 17 (12.5) | 17 (12.5) | 11 (12.5) | 15 (12.5) | |
| 24 (12.5) | 21 (12.5) | 21 (12.5) | 20 (12.5) | |
| 26 (12.5) | 24 (12.5) | 27 (12.5) | 23 (12.5) | |
| 27 (12.5) | 25 (12.5) | 28 (12.5) | 22 (12.5) | |
| 20 (6.25) | 22 (6.25) | 17 (6.25) | 22 (6.25) | |
| 21 (6.25) | 21 (6.25) | 23 (6.25) | 21 (6.25) | |
| 22 (12.5) | 25 (12.5) | 27 (12.5) | 23 (12.5) | |
| 30 (12.5) | 22 (12.5) | 26 (12.5) | 24 (12.5) | |
| 26 (12.5) | 23 (12.5) | 27 (12.5) | 23 (12.5) | |
| 31 (12.5) | 25 (12.5) | 28 (12.5) | 23 (12.5) | |
| 25 (6.25) | 24 (6.25) | 27 (6.25) | 24 (6.25) | |
| 28 (12.5) | 29 (12.5) | 25 (12.5) | 25 (12.5) | |
| 31 (12.5) | 28 (12.5) | 27 (12.5) | 24 (12.5) | |
| 29 (12.5) | 27 (12.5) | 26 (12.5) | 21 (12.5) | |
| 23 (12.5) | 26 (12.5) | 23 (12.5) | 25 (12.5) | |
| 21 (6.25) | 20 (6.25) | 21 (6.25) | 23 (6.25) | |
| 25 (12.5) | 22 (12.5) | 27 (12.5) | 28 (12.5) | |
| Standard | 27 (3.125) | 23 (6.25) | 27 (3.125) | 26 (6.25) |
Zone of inhibition (mm), MIC (μg/mL) given in parenthesis and ciclopiroxolamine as standard.
Docking results of synthesized compounds in the binding site of nuclear factor kappa b
| −74.15 | −73.1 | −73.15 | |
| −66.2304 | −70.6 | −56.7448 | |
| −78.2994 | −90.8 | −65.8385 | |
| −42.783 | −45.93 | −68.7026 | |
| −50.5602 | −54.9 | −50.366 | |
| −88.1508 | −110.2 | −70.312 | |
| −32.2859 | −40.6 | −55.3665 | |
| −49.5672 | −50.8 | −56.3479 | |
| −62.3895 | −62.4 | −50.3603 | |
| −74.4438 | −72.3 | −70.4519 | |
| −90.4298 | −117.4 | −80.5608 | |
| −83.3089 | −90.4 | −67.7796 | |
| −42.6816 | −50.3 | −60.7439 | |
| −91.9971 | −119.9 | −74.1695 | |
| −35.7564 | −46.7 | −68.4413 | |
| −72.932 | −69.9 | −60.4764 | |
| −60.4516 | −60.2 | −60.3893 | |
| −34.3128 | −101.7 | −53.5055 | |
| −41.0148 | −50.9 | −63.3827 | |
| −35.2375 | −40.6 | −87.3575 | |
| −79.2554 | −85.2 | −51.5586 | |
| −39.9575 | −42.3 | −67.6976 | |
| −32.1991 | −42.3 | −63.8354 | |
| −58.4277 | −60.9 | −67.0823 | |
| −58.424 | −60.9 | −53.7606 | |
| −30.0129 | −44.6 | −44.8782 |
Docking results of synthesized compounds in the binding site of vascular endothelial growth factor receptor-2
| −75.0934 | −72.2 | −79.4166 | |
| −78.2062 | −75.1 | −69.6532 | |
| −70.5653 | −95.6 | −68.46 | |
| −78.7892 | −72.3 | −63.191 | |
| −65.564 | −78.9 | −59.3404 | |
| −86.6543 | −105.7 | −80.5888 | |
| −71.8927 | −63.17 | −59.0905 | |
| −95.9923 | −120.5 | −94.7849 | |
| −79.948 | −71.9 | −56.0692 | |
| −73.5766 | −80 | −86.6021 | |
| −72.3245 | −73.6 | −73.1902 | |
| −75.4277 | −72.2 | −70.7142 | |
| −85.3265 | −94.6 | −54.4274 | |
| −75.329 | −75.3 | −71.2839 | |
| −80.914 | −75.1 | −73.6739 | |
| −75.3033 | −91.5 | −63.0176 | |
| −68.7853 | −74.3 | −69.6841 | |
| −104.9856 | −125.5 | −105.697 | |
| −92.6464 | −115.2 | −87.8944 | |
| −74.3443 | 76.7 | −70.902 | |
| −62.3597 | −73.3 | −50.6291 | |
| −60.2348 | −78.2 | −65.3015 | |
| −77.191 | −75.6 | −63.8723 | |
| −82.723 | −77.2 | −68.4238 | |
| −80.73 | −75 | −56.4072 | |
| −75.093 | −104.3 | −48.6469 |
Docking results of synthesized compounds in the binding site of phosphoinositide 3-kinase
| −119.541 | −122.5 | −78.0144 | |
| −67.4663 | 68.3 | −53.8734 | |
| −105.3452 | −90.9 | −68.1224 | |
| −75.0481 | −75 | −70.3258 | |
| −77.1818 | −77.2 | −61.47 | |
| −101.23 | −105.1 | −55.6405 | |
| −96.8291 | −110.9 | −54.3328 | |
| −92.0488 | −92 | −61.893 | |
| −75.3184 | −75.3 | −62.0764 | |
| −119.421 | −120.5 | −76.7195 | |
| 92.8443 | −92.3 | −62.324 | |
| −83.9072 | −83.9 | −85.1019 | |
| −80.5887 | −80.6 | −66.5004 | |
| −107.157 | −102.2 | −62.1177 | |
| −76.9716 | −77 | −70.2072 | |
| −94.8943 | −106.4 | −52.3224 | |
| −90.9786 | −91.4 | −66.5817 | |
| −110.067 | −91 | −80.4918 | |
| −83.2508 | −83.3 | −54.2574 | |
| −76.3532 | −76.3 | −86.3532 | |
| −82.2975 | −82.3 | −54.9572 | |
| −74.2083 | −74.2 | −71.0281 | |
| −81.0895 | −81.1 | −63.5472 | |
| −76.2358 | −76.2 | −58.7925 | |
| −67.4663 | −67.5 | −49.4389 | |
| −80.9917 | −81.1 | −48.6582 |
Cytotoxic activity of the newly synthesized compounds 1 to 26
| | ||||
|---|---|---|---|---|
| 10 | −75 | −7 | −138 | |
| 10 | −64 | 5 | 1 | |
| 10 | −78 | 0 | −16 | |
| 10 | −10 | 20 | −12 | |
| 10 | −20 | −3 | 6 | |
| 10 | −101 | −25 | −116 | |
| 10 | 14 | −16 | −115 | |
| 10 | −15 | −31 | −107 | |
| 10 | −56 | 19 | 8 | |
| 10 | −75 | −7 | −138 | |
| 10 | −117 | 7 | −107 | |
| 10 | −89 | 13 | −70 | |
| 10 | −14 | 3 | 5 | |
| 10 | −118 | −19 | −123 | |
| 10 | 12 | 5 | 17 | |
| 10 | −71 | −10 | −112 | |
| 10 | −51 | 4 | −102 | |
| 10 | 4 | −41 | −128 | |
| 10 | −10 | −26 | −80 | |
| 10 | 71 | 73 | 79 | |
| 10 | −80 | −5 | −20 | |
| 10 | 12 | −7 | −6 | |
| 10 | 6 | 2 | −103 | |
| 10 | −45 | −18 | −64 | |
| 10 | −7 | −12 | 1 | |
| Tannase | 10 | 17.3 | 12.4 | 9.7 |
Scheme 1Synthesis of β-keto esters from ethyl chloroformate and its conversion into pyrazolones.
Effect of solvent and base on the yield of 12
| LiHMDS (1.0M THF) (1 eq.) | 3 | THF | −78°C | 68 |
| LiHMDS (1.0M THF) (2 eq.) | 3 | Toluene | −78°C | 56 |
| KHMDS (3 eq.) | 7 | Toluene | −78°C | 42 |
| NaH (2 eq.) | 50 | THF | −78°C | 17 |
| NaOMe (2 eq.) | 75 | THF | Reflux | 0 |
| KOtBu (3 eq.) | 10 | THF | 25°C | 19 |
| LiHMDS (1.0M THF) (3.5 eq.) | 7 | Toluene | −50°C to−30°C | 92 |
aIsolated yield.
Synthesis of β-keto esters by cross-Claisen condensation
| 78 | |||
| 75 | |||
| 64 | |||
| 72 | |||
| 80 | |||
| 69 | |||
| 74 | |||
| 74 | |||
| 58 | |||
| 70 | |||
| 80 | |||
| 92 | |||
| 72 | |||
| 77 | |||
| 84 | |||
| 78 | |||
| 65a | |||
| 61 | |||
| 48 | |||
| 74 | |||
| 74 | |||
| 0a | |||
| 81 | |||
| 78 | |||
| 81 | |||
| 79 | |||
| 0a |
aPercentage of products in crude LC-MS.
Figure 1Molecular docking result of compound 14. (a) The docked poses of compound 14 at the site of nuclear factor kappa b; target protein is shown in the surface model, and the ligand is shown in the stick model. (b) A close-up view of the docked pose of compound 14. (c) The amino acid residue interaction, hydrogen bond networks in the binding pocket and the distance (in Angstrom units) of bonds are shown.
Figure 2Molecular docking result of compound 18. (a) Binding pose of compound 18 in the vascular endothelial growth factor receptor-2. (b) A close-up view of the binding pose of compound 18; protein structure is shown in the surface model, and the ligand is shown in the stick model. (c) H bond networks with protein residues are shown.
Figure 3Molecular docking result of compound 1. (a) Docked poses of compound 1 in human phosphoinositide 3-kinase binding site. (b) A close-up view of the docked pose of compound 1; protein structure is shown in the surface model, and the ligand is shown in the stick model (color by atom). (c) H bond networks and bond distance are shown.