| Literature DB >> 21588698 |
Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.
Abstract
In the crystal of the title 1:1 adduct, C(8)H(7)ClO(2)·C(12)H(10)N(4), the components are linked by an O-H⋯N hydrogen bond between the carb-oxy-lic acid and one of the pyridine N atoms. In the acid, the carb-oxy-lic acid group is approximately normal to [dihedral angle = 72.9 (2)°] but twisted with respect to the plane through the benzene ring [C-C-C-O torsion angle = 25.4 (5)°]. The base is roughly planar [dihedral angle between rings = 12.66 (15)°; r.m.s. deviation of the 16 non-H atoms = 0.107 Å] and the conformations about both imine bonds are E. The dimeric aggregates are linked into a supra-molecular layer in the ab plane by C-H⋯O inter-actions.Entities:
Year: 2010 PMID: 21588698 PMCID: PMC3008031 DOI: 10.1107/S1600536810032721
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H7ClO2·C12H10N4 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 4996 reflections |
| θ = 2.1–40.3° | |
| µ = 0.23 mm−1 | |
| Prism, yellow | |
| 0.22 × 0.19 × 0.09 mm |
| Rigaku Saturn724 diffractometer | 4091 independent reflections |
| Radiation source: sealed tube | 3661 reflections with |
| graphite | |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 27.5°, θmin = 2.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7554 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 4091 reflections | Δρmax = 0.28 e Å−3 |
| 247 parameters | Δρmin = −0.24 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 1973 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.09 (8) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.54028 (7) | 1.20255 (16) | 0.67877 (3) | 0.03461 (19) | |
| O1 | 0.2462 (2) | 0.4385 (5) | 0.86536 (7) | 0.0339 (6) | |
| H1o | 0.201 (3) | 0.542 (7) | 0.8788 (10) | 0.051* | |
| O2 | 0.2010 (2) | 0.7655 (5) | 0.81878 (7) | 0.0349 (6) | |
| N1 | 0.0916 (2) | 0.7320 (5) | 0.91096 (8) | 0.0273 (6) | |
| N2 | 0.0996 (2) | 0.3341 (5) | 1.00194 (8) | 0.0256 (6) | |
| N3 | 0.1807 (2) | 0.1275 (5) | 1.01538 (8) | 0.0249 (6) | |
| N4 | 0.1708 (2) | −0.3295 (6) | 1.10056 (8) | 0.0278 (6) | |
| C1 | 0.3916 (3) | 0.5966 (7) | 0.77127 (10) | 0.0273 (7) | |
| C2 | 0.4965 (3) | 0.7262 (7) | 0.77713 (10) | 0.0311 (7) | |
| H2 | 0.5380 | 0.6864 | 0.8009 | 0.037* | |
| C3 | 0.5427 (3) | 0.9140 (7) | 0.74890 (10) | 0.0308 (7) | |
| H3 | 0.6146 | 1.0022 | 0.7533 | 0.037* | |
| C4 | 0.4823 (3) | 0.9690 (6) | 0.71456 (10) | 0.0261 (7) | |
| C5 | 0.3768 (3) | 0.8454 (7) | 0.70749 (10) | 0.0291 (7) | |
| H5 | 0.3354 | 0.8872 | 0.6838 | 0.035* | |
| C6 | 0.3332 (3) | 0.6583 (7) | 0.73615 (10) | 0.0297 (7) | |
| H6 | 0.2613 | 0.5701 | 0.7316 | 0.036* | |
| C7 | 0.3417 (3) | 0.4012 (7) | 0.80335 (10) | 0.0319 (8) | |
| H7A | 0.3044 | 0.2341 | 0.7904 | 0.038* | |
| H7B | 0.4040 | 0.3272 | 0.8204 | 0.038* | |
| C8 | 0.2559 (3) | 0.5567 (7) | 0.82911 (10) | 0.0276 (7) | |
| C9 | 0.0329 (3) | 0.9348 (7) | 0.89091 (10) | 0.0284 (7) | |
| H9 | 0.0593 | 0.9934 | 0.8653 | 0.034* | |
| C10 | −0.0646 (3) | 1.0608 (7) | 0.90619 (10) | 0.0302 (7) | |
| H10 | −0.1038 | 1.2045 | 0.8914 | 0.036* | |
| C11 | −0.1048 (3) | 0.9744 (7) | 0.94373 (10) | 0.0263 (7) | |
| H11 | −0.1721 | 1.0564 | 0.9547 | 0.032* | |
| C12 | −0.0443 (3) | 0.7666 (6) | 0.96461 (10) | 0.0255 (6) | |
| H12 | −0.0696 | 0.7024 | 0.9901 | 0.031* | |
| C13 | 0.0548 (3) | 0.6533 (6) | 0.94746 (10) | 0.0245 (6) | |
| C14 | 0.1254 (3) | 0.4354 (6) | 0.96765 (9) | 0.0252 (7) | |
| H14 | 0.1924 | 0.3680 | 0.9547 | 0.030* | |
| C15 | 0.1501 (3) | 0.0090 (6) | 1.04822 (9) | 0.0250 (7) | |
| H15 | 0.0799 | 0.0642 | 1.0601 | 0.030* | |
| C16 | 0.2202 (3) | −0.2089 (6) | 1.06803 (9) | 0.0220 (6) | |
| C17 | 0.3292 (3) | −0.2836 (6) | 1.05470 (10) | 0.0265 (7) | |
| H17 | 0.3609 | −0.1966 | 1.0315 | 0.032* | |
| C18 | 0.3902 (3) | −0.4885 (7) | 1.07626 (10) | 0.0287 (7) | |
| H18 | 0.4648 | −0.5416 | 1.0682 | 0.034* | |
| C19 | 0.3413 (3) | −0.6131 (7) | 1.10929 (10) | 0.0306 (7) | |
| H19 | 0.3815 | −0.7537 | 1.1244 | 0.037* | |
| C20 | 0.2316 (3) | −0.5292 (7) | 1.12030 (10) | 0.0299 (7) | |
| H20 | 0.1980 | −0.6182 | 1.1430 | 0.036* |
| Cl1 | 0.0384 (4) | 0.0313 (4) | 0.0342 (4) | −0.0011 (3) | 0.0090 (4) | 0.0029 (4) |
| O1 | 0.0357 (14) | 0.0361 (13) | 0.0299 (14) | 0.0045 (10) | 0.0061 (10) | 0.0038 (10) |
| O2 | 0.0357 (14) | 0.0371 (13) | 0.0320 (14) | 0.0084 (11) | 0.0047 (11) | 0.0067 (11) |
| N1 | 0.0269 (14) | 0.0267 (13) | 0.0281 (14) | −0.0008 (11) | −0.0003 (11) | −0.0001 (12) |
| N2 | 0.0238 (13) | 0.0274 (13) | 0.0255 (14) | 0.0036 (10) | −0.0027 (11) | 0.0004 (11) |
| N3 | 0.0215 (13) | 0.0276 (13) | 0.0256 (14) | 0.0015 (11) | −0.0025 (10) | −0.0002 (11) |
| N4 | 0.0273 (14) | 0.0276 (14) | 0.0285 (15) | −0.0005 (12) | −0.0004 (12) | 0.0022 (11) |
| C1 | 0.0304 (17) | 0.0263 (16) | 0.0254 (16) | 0.0081 (13) | 0.0056 (13) | 0.0002 (13) |
| C2 | 0.0298 (17) | 0.0371 (18) | 0.0263 (17) | 0.0060 (14) | −0.0028 (13) | 0.0000 (14) |
| C3 | 0.0238 (16) | 0.0304 (16) | 0.038 (2) | −0.0023 (13) | 0.0010 (14) | −0.0014 (15) |
| C4 | 0.0313 (16) | 0.0210 (14) | 0.0259 (16) | 0.0018 (13) | 0.0058 (14) | −0.0032 (12) |
| C5 | 0.0296 (17) | 0.0312 (16) | 0.0266 (17) | 0.0036 (13) | −0.0031 (13) | −0.0024 (14) |
| C6 | 0.0268 (16) | 0.0287 (16) | 0.0337 (19) | −0.0007 (13) | 0.0005 (14) | −0.0039 (14) |
| C7 | 0.0338 (18) | 0.0256 (16) | 0.036 (2) | 0.0058 (14) | 0.0059 (15) | 0.0021 (14) |
| C8 | 0.0264 (16) | 0.0275 (16) | 0.0288 (17) | −0.0079 (13) | −0.0023 (14) | 0.0020 (14) |
| C9 | 0.0296 (17) | 0.0298 (17) | 0.0256 (17) | 0.0004 (13) | −0.0025 (13) | 0.0038 (14) |
| C10 | 0.0327 (17) | 0.0265 (15) | 0.0313 (19) | 0.0019 (14) | −0.0106 (15) | 0.0006 (14) |
| C11 | 0.0220 (16) | 0.0257 (15) | 0.0314 (17) | 0.0007 (12) | −0.0035 (13) | 0.0005 (14) |
| C12 | 0.0244 (15) | 0.0250 (15) | 0.0270 (16) | −0.0056 (12) | 0.0015 (13) | 0.0003 (13) |
| C13 | 0.0235 (15) | 0.0226 (14) | 0.0273 (17) | −0.0033 (12) | −0.0025 (13) | −0.0032 (12) |
| C14 | 0.0212 (15) | 0.0249 (16) | 0.0294 (17) | −0.0006 (12) | −0.0001 (13) | −0.0020 (13) |
| C15 | 0.0244 (16) | 0.0244 (15) | 0.0263 (16) | 0.0006 (12) | −0.0038 (13) | −0.0026 (12) |
| C16 | 0.0243 (15) | 0.0193 (13) | 0.0223 (15) | −0.0027 (12) | −0.0019 (12) | −0.0013 (12) |
| C17 | 0.0253 (17) | 0.0273 (16) | 0.0269 (17) | −0.0021 (13) | 0.0002 (13) | 0.0018 (14) |
| C18 | 0.0193 (15) | 0.0299 (16) | 0.037 (2) | −0.0005 (13) | −0.0029 (13) | −0.0037 (14) |
| C19 | 0.0378 (18) | 0.0256 (16) | 0.0283 (18) | 0.0004 (14) | −0.0123 (14) | 0.0019 (14) |
| C20 | 0.0383 (19) | 0.0292 (16) | 0.0222 (16) | −0.0014 (14) | −0.0031 (14) | 0.0020 (13) |
| Cl1—C4 | 1.753 (3) | C7—H7A | 0.9900 |
| O1—C8 | 1.336 (4) | C7—H7B | 0.9900 |
| O1—H1o | 0.85 (3) | C9—C10 | 1.383 (5) |
| O2—C8 | 1.214 (4) | C9—H9 | 0.9500 |
| N1—C13 | 1.346 (4) | C10—C11 | 1.400 (5) |
| N1—C9 | 1.346 (4) | C10—H10 | 0.9500 |
| N2—C14 | 1.276 (4) | C11—C12 | 1.387 (4) |
| N2—N3 | 1.424 (3) | C11—H11 | 0.9500 |
| N3—C15 | 1.280 (4) | C12—C13 | 1.399 (4) |
| N4—C20 | 1.343 (4) | C12—H12 | 0.9500 |
| N4—C16 | 1.354 (4) | C13—C14 | 1.472 (4) |
| C1—C2 | 1.385 (5) | C14—H14 | 0.9500 |
| C1—C6 | 1.391 (5) | C15—C16 | 1.463 (4) |
| C1—C7 | 1.522 (4) | C15—H15 | 0.9500 |
| C2—C3 | 1.394 (5) | C16—C17 | 1.399 (4) |
| C2—H2 | 0.9500 | C17—C18 | 1.391 (4) |
| C3—C4 | 1.373 (5) | C17—H17 | 0.9500 |
| C3—H3 | 0.9500 | C18—C19 | 1.373 (5) |
| C4—C5 | 1.386 (4) | C18—H18 | 0.9500 |
| C5—C6 | 1.391 (5) | C19—C20 | 1.396 (5) |
| C5—H5 | 0.9500 | C19—H19 | 0.9500 |
| C6—H6 | 0.9500 | C20—H20 | 0.9500 |
| C7—C8 | 1.509 (4) | ||
| C8—O1—H1o | 108 (3) | C10—C9—H9 | 118.8 |
| C13—N1—C9 | 118.5 (3) | C9—C10—C11 | 119.3 (3) |
| C14—N2—N3 | 111.9 (3) | C9—C10—H10 | 120.4 |
| C15—N3—N2 | 111.9 (3) | C11—C10—H10 | 120.4 |
| C20—N4—C16 | 116.9 (3) | C12—C11—C10 | 118.6 (3) |
| C2—C1—C6 | 118.0 (3) | C12—C11—H11 | 120.7 |
| C2—C1—C7 | 120.1 (3) | C10—C11—H11 | 120.7 |
| C6—C1—C7 | 121.9 (3) | C11—C12—C13 | 118.7 (3) |
| C1—C2—C3 | 121.4 (3) | C11—C12—H12 | 120.6 |
| C1—C2—H2 | 119.3 | C13—C12—H12 | 120.6 |
| C3—C2—H2 | 119.3 | N1—C13—C12 | 122.5 (3) |
| C4—C3—C2 | 118.8 (3) | N1—C13—C14 | 115.0 (3) |
| C4—C3—H3 | 120.6 | C12—C13—C14 | 122.5 (3) |
| C2—C3—H3 | 120.6 | N2—C14—C13 | 122.1 (3) |
| C3—C4—C5 | 121.8 (3) | N2—C14—H14 | 118.9 |
| C3—C4—Cl1 | 119.1 (2) | C13—C14—H14 | 118.9 |
| C5—C4—Cl1 | 119.1 (3) | N3—C15—C16 | 121.9 (3) |
| C4—C5—C6 | 118.0 (3) | N3—C15—H15 | 119.1 |
| C4—C5—H5 | 121.0 | C16—C15—H15 | 119.1 |
| C6—C5—H5 | 121.0 | N4—C16—C17 | 123.1 (3) |
| C1—C6—C5 | 122.0 (3) | N4—C16—C15 | 114.1 (3) |
| C1—C6—H6 | 119.0 | C17—C16—C15 | 122.8 (3) |
| C5—C6—H6 | 119.0 | C18—C17—C16 | 118.3 (3) |
| C8—C7—C1 | 112.0 (3) | C18—C17—H17 | 120.8 |
| C8—C7—H7A | 109.2 | C16—C17—H17 | 120.8 |
| C1—C7—H7A | 109.2 | C19—C18—C17 | 119.4 (3) |
| C8—C7—H7B | 109.2 | C19—C18—H18 | 120.3 |
| C1—C7—H7B | 109.2 | C17—C18—H18 | 120.3 |
| H7A—C7—H7B | 107.9 | C18—C19—C20 | 118.7 (3) |
| O2—C8—O1 | 122.7 (3) | C18—C19—H19 | 120.6 |
| O2—C8—C7 | 125.0 (3) | C20—C19—H19 | 120.6 |
| O1—C8—C7 | 112.3 (3) | N4—C20—C19 | 123.6 (3) |
| N1—C9—C10 | 122.4 (3) | N4—C20—H20 | 118.2 |
| N1—C9—H9 | 118.8 | C19—C20—H20 | 118.2 |
| C14—N2—N3—C15 | −174.8 (3) | C9—N1—C13—C12 | 2.4 (5) |
| C6—C1—C2—C3 | 0.2 (5) | C9—N1—C13—C14 | −178.6 (3) |
| C7—C1—C2—C3 | −177.8 (3) | C11—C12—C13—N1 | −2.1 (5) |
| C1—C2—C3—C4 | −0.3 (5) | C11—C12—C13—C14 | 179.0 (3) |
| C2—C3—C4—C5 | 0.6 (5) | N3—N2—C14—C13 | −179.8 (2) |
| C2—C3—C4—Cl1 | −179.5 (2) | N1—C13—C14—N2 | −178.1 (3) |
| C3—C4—C5—C6 | −0.9 (5) | C12—C13—C14—N2 | 0.9 (5) |
| Cl1—C4—C5—C6 | 179.3 (2) | N2—N3—C15—C16 | −179.6 (3) |
| C2—C1—C6—C5 | −0.4 (5) | C20—N4—C16—C17 | 0.0 (4) |
| C7—C1—C6—C5 | 177.5 (3) | C20—N4—C16—C15 | −179.3 (3) |
| C4—C5—C6—C1 | 0.7 (5) | N3—C15—C16—N4 | −174.6 (3) |
| C2—C1—C7—C8 | 98.4 (4) | N3—C15—C16—C17 | 6.0 (5) |
| C6—C1—C7—C8 | −79.5 (4) | N4—C16—C17—C18 | −0.9 (5) |
| C1—C7—C8—O2 | 25.4 (5) | C15—C16—C17—C18 | 178.4 (3) |
| C1—C7—C8—O1 | −154.6 (3) | C16—C17—C18—C19 | 0.9 (5) |
| C13—N1—C9—C10 | −1.1 (5) | C17—C18—C19—C20 | −0.1 (5) |
| N1—C9—C10—C11 | −0.5 (5) | C16—N4—C20—C19 | 0.8 (5) |
| C9—C10—C11—C12 | 0.8 (5) | C18—C19—C20—N4 | −0.8 (5) |
| C10—C11—C12—C13 | 0.4 (4) |
| H··· | ||||
| O1—H1o···N1 | 0.85 (3) | 1.89 (3) | 2.734 (4) | 173 (3) |
| C9—H9···O2 | 0.95 | 2.51 | 3.215 (4) | 131 |
| C10—H10···O1i | 0.95 | 2.57 | 3.493 (4) | 164 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.85 (3) | 1.89 (3) | 2.734 (4) | 173 (3) |
| C9—H9⋯O2 | 0.95 | 2.51 | 3.215 (4) | 131 |
| C10—H10⋯O1i | 0.95 | 2.57 | 3.493 (4) | 164 |
Symmetry code: (i) .