Literature DB >> 21588698

2-(4-Chloro-phen-yl)acetic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (1/1).

Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.   

Abstract

In the crystal of the title 1:1 adduct, C(8)H(7)ClO(2)·C(12)H(10)N(4), the components are linked by an O-H⋯N hydrogen bond between the carb-oxy-lic acid and one of the pyridine N atoms. In the acid, the carb-oxy-lic acid group is approximately normal to [dihedral angle = 72.9 (2)°] but twisted with respect to the plane through the benzene ring [C-C-C-O torsion angle = 25.4 (5)°]. The base is roughly planar [dihedral angle between rings = 12.66 (15)°; r.m.s. deviation of the 16 non-H atoms = 0.107 Å] and the conformations about both imine bonds are E. The dimeric aggregates are linked into a supra-molecular layer in the ab plane by C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21588698      PMCID: PMC3008031          DOI: 10.1107/S1600536810032721

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystal formation, see: Broker & Tiekink (2007 ▶); Broker et al. (2008 ▶); Arman et al. (2010 ▶).

Experimental

Crystal data

C8H7ClO2·C12H10N4 M = 380.83 Orthorhombic, a = 11.740 (6) Å b = 4.641 (2) Å c = 33.451 (15) Å V = 1822.6 (15) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 98 K 0.22 × 0.19 × 0.09 mm

Data collection

Rigaku Saturn724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.625, T max = 1.000 7554 measured reflections 4091 independent reflections 3661 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.113 S = 1.14 4091 reflections 247 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.24 e Å−3 Absolute structure: Flack (1983 ▶), 1973 Friedel pairs Flack parameter: 0.09 (8) Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810032721/hb5608sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032721/hb5608Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H7ClO2·C12H10N4F(000) = 792
Mr = 380.83Dx = 1.388 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 4996 reflections
a = 11.740 (6) Åθ = 2.1–40.3°
b = 4.641 (2) ŵ = 0.23 mm1
c = 33.451 (15) ÅT = 98 K
V = 1822.6 (15) Å3Prism, yellow
Z = 40.22 × 0.19 × 0.09 mm
Rigaku Saturn724 diffractometer4091 independent reflections
Radiation source: sealed tube3661 reflections with I > 2σ(I)
graphiteRint = 0.046
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 2.4°
ω scansh = −4→15
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −4→6
Tmin = 0.625, Tmax = 1.000l = −43→42
7554 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0265P)2 + 0.6335P] where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max = 0.001
4091 reflectionsΔρmax = 0.28 e Å3
247 parametersΔρmin = −0.24 e Å3
2 restraintsAbsolute structure: Flack (1983), 1973 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.09 (8)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.54028 (7)1.20255 (16)0.67877 (3)0.03461 (19)
O10.2462 (2)0.4385 (5)0.86536 (7)0.0339 (6)
H1o0.201 (3)0.542 (7)0.8788 (10)0.051*
O20.2010 (2)0.7655 (5)0.81878 (7)0.0349 (6)
N10.0916 (2)0.7320 (5)0.91096 (8)0.0273 (6)
N20.0996 (2)0.3341 (5)1.00194 (8)0.0256 (6)
N30.1807 (2)0.1275 (5)1.01538 (8)0.0249 (6)
N40.1708 (2)−0.3295 (6)1.10056 (8)0.0278 (6)
C10.3916 (3)0.5966 (7)0.77127 (10)0.0273 (7)
C20.4965 (3)0.7262 (7)0.77713 (10)0.0311 (7)
H20.53800.68640.80090.037*
C30.5427 (3)0.9140 (7)0.74890 (10)0.0308 (7)
H30.61461.00220.75330.037*
C40.4823 (3)0.9690 (6)0.71456 (10)0.0261 (7)
C50.3768 (3)0.8454 (7)0.70749 (10)0.0291 (7)
H50.33540.88720.68380.035*
C60.3332 (3)0.6583 (7)0.73615 (10)0.0297 (7)
H60.26130.57010.73160.036*
C70.3417 (3)0.4012 (7)0.80335 (10)0.0319 (8)
H7A0.30440.23410.79040.038*
H7B0.40400.32720.82040.038*
C80.2559 (3)0.5567 (7)0.82911 (10)0.0276 (7)
C90.0329 (3)0.9348 (7)0.89091 (10)0.0284 (7)
H90.05930.99340.86530.034*
C10−0.0646 (3)1.0608 (7)0.90619 (10)0.0302 (7)
H10−0.10381.20450.89140.036*
C11−0.1048 (3)0.9744 (7)0.94373 (10)0.0263 (7)
H11−0.17211.05640.95470.032*
C12−0.0443 (3)0.7666 (6)0.96461 (10)0.0255 (6)
H12−0.06960.70240.99010.031*
C130.0548 (3)0.6533 (6)0.94746 (10)0.0245 (6)
C140.1254 (3)0.4354 (6)0.96765 (9)0.0252 (7)
H140.19240.36800.95470.030*
C150.1501 (3)0.0090 (6)1.04822 (9)0.0250 (7)
H150.07990.06421.06010.030*
C160.2202 (3)−0.2089 (6)1.06803 (9)0.0220 (6)
C170.3292 (3)−0.2836 (6)1.05470 (10)0.0265 (7)
H170.3609−0.19661.03150.032*
C180.3902 (3)−0.4885 (7)1.07626 (10)0.0287 (7)
H180.4648−0.54161.06820.034*
C190.3413 (3)−0.6131 (7)1.10929 (10)0.0306 (7)
H190.3815−0.75371.12440.037*
C200.2316 (3)−0.5292 (7)1.12030 (10)0.0299 (7)
H200.1980−0.61821.14300.036*
U11U22U33U12U13U23
Cl10.0384 (4)0.0313 (4)0.0342 (4)−0.0011 (3)0.0090 (4)0.0029 (4)
O10.0357 (14)0.0361 (13)0.0299 (14)0.0045 (10)0.0061 (10)0.0038 (10)
O20.0357 (14)0.0371 (13)0.0320 (14)0.0084 (11)0.0047 (11)0.0067 (11)
N10.0269 (14)0.0267 (13)0.0281 (14)−0.0008 (11)−0.0003 (11)−0.0001 (12)
N20.0238 (13)0.0274 (13)0.0255 (14)0.0036 (10)−0.0027 (11)0.0004 (11)
N30.0215 (13)0.0276 (13)0.0256 (14)0.0015 (11)−0.0025 (10)−0.0002 (11)
N40.0273 (14)0.0276 (14)0.0285 (15)−0.0005 (12)−0.0004 (12)0.0022 (11)
C10.0304 (17)0.0263 (16)0.0254 (16)0.0081 (13)0.0056 (13)0.0002 (13)
C20.0298 (17)0.0371 (18)0.0263 (17)0.0060 (14)−0.0028 (13)0.0000 (14)
C30.0238 (16)0.0304 (16)0.038 (2)−0.0023 (13)0.0010 (14)−0.0014 (15)
C40.0313 (16)0.0210 (14)0.0259 (16)0.0018 (13)0.0058 (14)−0.0032 (12)
C50.0296 (17)0.0312 (16)0.0266 (17)0.0036 (13)−0.0031 (13)−0.0024 (14)
C60.0268 (16)0.0287 (16)0.0337 (19)−0.0007 (13)0.0005 (14)−0.0039 (14)
C70.0338 (18)0.0256 (16)0.036 (2)0.0058 (14)0.0059 (15)0.0021 (14)
C80.0264 (16)0.0275 (16)0.0288 (17)−0.0079 (13)−0.0023 (14)0.0020 (14)
C90.0296 (17)0.0298 (17)0.0256 (17)0.0004 (13)−0.0025 (13)0.0038 (14)
C100.0327 (17)0.0265 (15)0.0313 (19)0.0019 (14)−0.0106 (15)0.0006 (14)
C110.0220 (16)0.0257 (15)0.0314 (17)0.0007 (12)−0.0035 (13)0.0005 (14)
C120.0244 (15)0.0250 (15)0.0270 (16)−0.0056 (12)0.0015 (13)0.0003 (13)
C130.0235 (15)0.0226 (14)0.0273 (17)−0.0033 (12)−0.0025 (13)−0.0032 (12)
C140.0212 (15)0.0249 (16)0.0294 (17)−0.0006 (12)−0.0001 (13)−0.0020 (13)
C150.0244 (16)0.0244 (15)0.0263 (16)0.0006 (12)−0.0038 (13)−0.0026 (12)
C160.0243 (15)0.0193 (13)0.0223 (15)−0.0027 (12)−0.0019 (12)−0.0013 (12)
C170.0253 (17)0.0273 (16)0.0269 (17)−0.0021 (13)0.0002 (13)0.0018 (14)
C180.0193 (15)0.0299 (16)0.037 (2)−0.0005 (13)−0.0029 (13)−0.0037 (14)
C190.0378 (18)0.0256 (16)0.0283 (18)0.0004 (14)−0.0123 (14)0.0019 (14)
C200.0383 (19)0.0292 (16)0.0222 (16)−0.0014 (14)−0.0031 (14)0.0020 (13)
Cl1—C41.753 (3)C7—H7A0.9900
O1—C81.336 (4)C7—H7B0.9900
O1—H1o0.85 (3)C9—C101.383 (5)
O2—C81.214 (4)C9—H90.9500
N1—C131.346 (4)C10—C111.400 (5)
N1—C91.346 (4)C10—H100.9500
N2—C141.276 (4)C11—C121.387 (4)
N2—N31.424 (3)C11—H110.9500
N3—C151.280 (4)C12—C131.399 (4)
N4—C201.343 (4)C12—H120.9500
N4—C161.354 (4)C13—C141.472 (4)
C1—C21.385 (5)C14—H140.9500
C1—C61.391 (5)C15—C161.463 (4)
C1—C71.522 (4)C15—H150.9500
C2—C31.394 (5)C16—C171.399 (4)
C2—H20.9500C17—C181.391 (4)
C3—C41.373 (5)C17—H170.9500
C3—H30.9500C18—C191.373 (5)
C4—C51.386 (4)C18—H180.9500
C5—C61.391 (5)C19—C201.396 (5)
C5—H50.9500C19—H190.9500
C6—H60.9500C20—H200.9500
C7—C81.509 (4)
C8—O1—H1o108 (3)C10—C9—H9118.8
C13—N1—C9118.5 (3)C9—C10—C11119.3 (3)
C14—N2—N3111.9 (3)C9—C10—H10120.4
C15—N3—N2111.9 (3)C11—C10—H10120.4
C20—N4—C16116.9 (3)C12—C11—C10118.6 (3)
C2—C1—C6118.0 (3)C12—C11—H11120.7
C2—C1—C7120.1 (3)C10—C11—H11120.7
C6—C1—C7121.9 (3)C11—C12—C13118.7 (3)
C1—C2—C3121.4 (3)C11—C12—H12120.6
C1—C2—H2119.3C13—C12—H12120.6
C3—C2—H2119.3N1—C13—C12122.5 (3)
C4—C3—C2118.8 (3)N1—C13—C14115.0 (3)
C4—C3—H3120.6C12—C13—C14122.5 (3)
C2—C3—H3120.6N2—C14—C13122.1 (3)
C3—C4—C5121.8 (3)N2—C14—H14118.9
C3—C4—Cl1119.1 (2)C13—C14—H14118.9
C5—C4—Cl1119.1 (3)N3—C15—C16121.9 (3)
C4—C5—C6118.0 (3)N3—C15—H15119.1
C4—C5—H5121.0C16—C15—H15119.1
C6—C5—H5121.0N4—C16—C17123.1 (3)
C1—C6—C5122.0 (3)N4—C16—C15114.1 (3)
C1—C6—H6119.0C17—C16—C15122.8 (3)
C5—C6—H6119.0C18—C17—C16118.3 (3)
C8—C7—C1112.0 (3)C18—C17—H17120.8
C8—C7—H7A109.2C16—C17—H17120.8
C1—C7—H7A109.2C19—C18—C17119.4 (3)
C8—C7—H7B109.2C19—C18—H18120.3
C1—C7—H7B109.2C17—C18—H18120.3
H7A—C7—H7B107.9C18—C19—C20118.7 (3)
O2—C8—O1122.7 (3)C18—C19—H19120.6
O2—C8—C7125.0 (3)C20—C19—H19120.6
O1—C8—C7112.3 (3)N4—C20—C19123.6 (3)
N1—C9—C10122.4 (3)N4—C20—H20118.2
N1—C9—H9118.8C19—C20—H20118.2
C14—N2—N3—C15−174.8 (3)C9—N1—C13—C122.4 (5)
C6—C1—C2—C30.2 (5)C9—N1—C13—C14−178.6 (3)
C7—C1—C2—C3−177.8 (3)C11—C12—C13—N1−2.1 (5)
C1—C2—C3—C4−0.3 (5)C11—C12—C13—C14179.0 (3)
C2—C3—C4—C50.6 (5)N3—N2—C14—C13−179.8 (2)
C2—C3—C4—Cl1−179.5 (2)N1—C13—C14—N2−178.1 (3)
C3—C4—C5—C6−0.9 (5)C12—C13—C14—N20.9 (5)
Cl1—C4—C5—C6179.3 (2)N2—N3—C15—C16−179.6 (3)
C2—C1—C6—C5−0.4 (5)C20—N4—C16—C170.0 (4)
C7—C1—C6—C5177.5 (3)C20—N4—C16—C15−179.3 (3)
C4—C5—C6—C10.7 (5)N3—C15—C16—N4−174.6 (3)
C2—C1—C7—C898.4 (4)N3—C15—C16—C176.0 (5)
C6—C1—C7—C8−79.5 (4)N4—C16—C17—C18−0.9 (5)
C1—C7—C8—O225.4 (5)C15—C16—C17—C18178.4 (3)
C1—C7—C8—O1−154.6 (3)C16—C17—C18—C190.9 (5)
C13—N1—C9—C10−1.1 (5)C17—C18—C19—C20−0.1 (5)
N1—C9—C10—C11−0.5 (5)C16—N4—C20—C190.8 (5)
C9—C10—C11—C120.8 (5)C18—C19—C20—N4−0.8 (5)
C10—C11—C12—C130.4 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N10.85 (3)1.89 (3)2.734 (4)173 (3)
C9—H9···O20.952.513.215 (4)131
C10—H10···O1i0.952.573.493 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N10.85 (3)1.89 (3)2.734 (4)173 (3)
C9—H9⋯O20.952.513.215 (4)131
C10—H10⋯O1i0.952.573.493 (4)164

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Benzoic acid-2,9-dimethyl-phenanthroline (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24
  2 in total
  5 in total

1.  2-Phenyl-acetic acid-(E,E)-4,4'-(hydra-zinediylidene)dipyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25

2.  2-Phenyl-acetic acid-3-{(E)-2-[(E)-pyridin-3-yl-methyl-idene]hydrazin-1-ylidenemeth-yl}pyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30

3.  1,2,4,5-Tetra-fluoro-3,6-diiodo-benzene-4-(pyridin-4-ylsulfan-yl)pyridine (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30

4.  Benzoic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

5.  Benzoic acid-4-{(1E)-[(E)-2-(pyridin-4-yl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23
  5 in total

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