Literature DB >> 21589004

Benzoic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (2/1).

Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.   

Abstract

The asymmetric unit of the title cocrystal, C(12)H(10)N(4)·2C(7)H(6)O(2), comprises a single mol-ecule of benzoic acid and one half-mol-ecule of 2-pyridine-aldazine situated about a centre of inversion. The carboxyl group is coplanar with the benzene ring to which it is connected [O-C-C-C = -172.47 (12)°] and similarly, the 2-pyridine-aldazine mol-ecule is planar (r.m.s. deviation of the 16 non-H atoms = 0.017 Å). In the crystal, mol-ecules are connected into a non-planar three-mol-ecule aggregate [dihedral angle between the benzene and pyridyl ring connected by the hydrogen bond = 61.30 (7)°] with a twisted Z-shape. Layers of 2-pyridine-aldazine mol-ecules in the ab plane are sandwiched by benzoic acid mol-ecules being connected by O-H⋯N and C-H⋯O inter-actions, the latter involving the carbonyl O atom so that each benzoic acid mol-ecule links three different 2-pyridine-aldazine mol-ecules. Inter-digitated layers stack along the c axis.

Entities:  

Year:  2010        PMID: 21589004      PMCID: PMC3009141          DOI: 10.1107/S1600536810040651

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystal formation involving the isomeric n-pyridine­aldazines, see: Broker et al. (2008 ▶); Arman et al. (2010a ▶,b ▶).

Experimental

Crystal data

C12H10N4·2C7H6O2 M = 454.48 Triclinic, a = 4.4509 (7) Å b = 11.3635 (17) Å c = 12.0612 (17) Å α = 108.985 (6)° β = 99.830 (9)° γ = 97.849 (10)° V = 556.16 (14) Å3 Z = 1 Mo Kα radiation μ = 0.09 mm−1 T = 98 K 0.40 × 0.29 × 0.12 mm

Data collection

Rigaku AFC12/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.759, T max = 1.000 2790 measured reflections 1935 independent reflections 1811 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.117 S = 1.00 1935 reflections 158 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810040651/hg2725sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810040651/hg2725Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N4·2C7H6O2Z = 1
Mr = 454.48F(000) = 238
Triclinic, P1Dx = 1.357 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.4509 (7) ÅCell parameters from 2619 reflections
b = 11.3635 (17) Åθ = 2.1–40.2°
c = 12.0612 (17) ŵ = 0.09 mm1
α = 108.985 (6)°T = 98 K
β = 99.830 (9)°Block, yellow
γ = 97.849 (10)°0.40 × 0.29 × 0.12 mm
V = 556.16 (14) Å3
Rigaku AFC12K/SATURN724 diffractometer1935 independent reflections
Radiation source: fine-focus sealed tube1811 reflections with I > 2σ(I)
graphiteRint = 0.022
ω scansθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −5→4
Tmin = 0.759, Tmax = 1.000k = −13→13
2790 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0744P)2 + 0.1759P] where P = (Fo2 + 2Fc2)/3
1935 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.20 e Å3
1 restraintΔρmin = −0.23 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6343 (3)0.67141 (10)0.18059 (9)0.0287 (3)
H1o0.584 (5)0.692 (2)0.2479 (12)0.050 (6)*
O20.7598 (3)0.88248 (10)0.23009 (9)0.0315 (3)
C10.7523 (3)0.77587 (13)0.16270 (12)0.0235 (3)
C20.8828 (3)0.74881 (14)0.05272 (12)0.0227 (3)
C31.0455 (3)0.85068 (14)0.03269 (13)0.0278 (4)
H31.07020.93490.08780.033*
C41.1716 (4)0.82926 (15)−0.06766 (14)0.0311 (4)
H41.28460.8987−0.08090.037*
C51.1331 (4)0.70640 (15)−0.14890 (13)0.0289 (4)
H51.21920.6919−0.21780.035*
C60.9695 (4)0.60477 (15)−0.12974 (13)0.0294 (4)
H60.94280.5208−0.18560.035*
C70.8444 (3)0.62603 (14)−0.02863 (13)0.0263 (3)
H70.73260.5564−0.01520.032*
N10.4834 (3)0.73022 (11)0.39929 (10)0.0214 (3)
N20.9261 (3)0.54922 (10)0.52702 (10)0.0211 (3)
C80.6169 (3)0.69350 (12)0.48783 (12)0.0190 (3)
C90.6033 (3)0.75148 (13)0.60760 (12)0.0219 (3)
H90.70020.72360.66830.026*
C100.4469 (3)0.85009 (13)0.63643 (12)0.0233 (3)
H100.43650.89180.71750.028*
C110.3052 (3)0.88738 (13)0.54546 (13)0.0231 (3)
H110.19320.95410.56270.028*
C120.3304 (3)0.82529 (13)0.42883 (13)0.0230 (3)
H120.23440.85150.36680.028*
C130.7833 (3)0.58938 (13)0.45006 (12)0.0209 (3)
H130.78460.55160.36740.025*
U11U22U33U12U13U23
O10.0405 (6)0.0251 (6)0.0230 (5)0.0084 (5)0.0124 (5)0.0085 (4)
O20.0457 (7)0.0254 (6)0.0247 (6)0.0126 (5)0.0110 (5)0.0070 (5)
C10.0261 (7)0.0244 (7)0.0208 (7)0.0084 (6)0.0028 (5)0.0093 (6)
C20.0231 (7)0.0261 (7)0.0200 (7)0.0083 (6)0.0018 (5)0.0098 (6)
C30.0333 (8)0.0248 (8)0.0231 (7)0.0064 (6)0.0035 (6)0.0070 (6)
C40.0336 (8)0.0315 (8)0.0299 (8)0.0025 (7)0.0065 (6)0.0151 (7)
C50.0302 (8)0.0372 (8)0.0238 (7)0.0118 (6)0.0087 (6)0.0135 (6)
C60.0349 (8)0.0277 (8)0.0262 (8)0.0103 (6)0.0091 (6)0.0075 (6)
C70.0314 (8)0.0236 (7)0.0259 (7)0.0084 (6)0.0081 (6)0.0098 (6)
N10.0212 (6)0.0202 (6)0.0235 (6)0.0037 (5)0.0055 (5)0.0088 (5)
N20.0200 (6)0.0203 (6)0.0242 (6)0.0063 (5)0.0077 (5)0.0073 (5)
C80.0165 (6)0.0182 (6)0.0232 (7)0.0018 (5)0.0060 (5)0.0087 (5)
C90.0205 (7)0.0234 (7)0.0231 (7)0.0037 (5)0.0059 (5)0.0100 (6)
C100.0251 (7)0.0223 (7)0.0230 (7)0.0036 (6)0.0100 (6)0.0069 (6)
C110.0214 (7)0.0183 (7)0.0312 (8)0.0052 (5)0.0092 (6)0.0091 (6)
C120.0220 (7)0.0217 (7)0.0272 (7)0.0050 (5)0.0040 (5)0.0117 (6)
C130.0194 (6)0.0204 (7)0.0237 (7)0.0036 (5)0.0076 (5)0.0078 (6)
O1—C11.3292 (18)N1—C121.3381 (18)
O1—H1o0.846 (9)N1—C81.3449 (18)
O2—C11.2117 (17)N2—C131.2757 (18)
C1—C21.496 (2)N2—N2i1.408 (2)
C2—C71.388 (2)C8—C91.3949 (19)
C2—C31.391 (2)C8—C131.4698 (18)
C3—C41.384 (2)C9—C101.380 (2)
C3—H30.9500C9—H90.9500
C4—C51.388 (2)C10—C111.386 (2)
C4—H40.9500C10—H100.9500
C5—C61.385 (2)C11—C121.385 (2)
C5—H50.9500C11—H110.9500
C6—C71.390 (2)C12—H120.9500
C6—H60.9500C13—H130.9500
C7—H70.9500
C1—O1—H1o109.1 (15)C6—C7—H7120.0
O2—C1—O1123.44 (13)C12—N1—C8117.83 (12)
O2—C1—C2123.29 (14)C13—N2—N2i111.87 (13)
O1—C1—C2113.26 (12)N1—C8—C9122.45 (12)
C7—C2—C3119.91 (13)N1—C8—C13115.34 (12)
C7—C2—C1121.78 (14)C9—C8—C13122.20 (12)
C3—C2—C1118.31 (13)C10—C9—C8118.85 (13)
C4—C3—C2119.96 (14)C10—C9—H9120.6
C4—C3—H3120.0C8—C9—H9120.6
C2—C3—H3120.0C9—C10—C11119.04 (12)
C3—C4—C5120.05 (14)C9—C10—H10120.5
C3—C4—H4120.0C11—C10—H10120.5
C5—C4—H4120.0C10—C11—C12118.57 (12)
C6—C5—C4120.19 (14)C10—C11—H11120.7
C6—C5—H5119.9C12—C11—H11120.7
C4—C5—H5119.9N1—C12—C11123.25 (13)
C5—C6—C7119.84 (14)N1—C12—H12118.4
C5—C6—H6120.1C11—C12—H12118.4
C7—C6—H6120.1N2—C13—C8120.75 (12)
C2—C7—C6120.06 (14)N2—C13—H13119.6
C2—C7—H7120.0C8—C13—H13119.6
O2—C1—C2—C7−173.81 (14)C12—N1—C8—C9−0.65 (19)
O1—C1—C2—C77.72 (19)C12—N1—C8—C13−179.57 (11)
O2—C1—C2—C36.0 (2)N1—C8—C9—C100.1 (2)
O1—C1—C2—C3−172.47 (12)C13—C8—C9—C10178.93 (12)
C7—C2—C3—C4−0.7 (2)C8—C9—C10—C110.8 (2)
C1—C2—C3—C4179.52 (13)C9—C10—C11—C12−1.0 (2)
C2—C3—C4—C50.6 (2)C8—N1—C12—C110.4 (2)
C3—C4—C5—C6−0.2 (2)C10—C11—C12—N10.5 (2)
C4—C5—C6—C7−0.2 (2)N2i—N2—C13—C8−179.13 (12)
C3—C2—C7—C60.3 (2)N1—C8—C13—N2178.03 (12)
C1—C2—C7—C6−179.93 (13)C9—C8—C13—N2−0.9 (2)
C5—C6—C7—C20.2 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N10.85 (2)1.88 (2)2.7269 (16)177 (2)
C11—H11···O2ii0.952.543.1811 (19)125
C12—H12···O2iii0.952.593.4647 (19)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N10.85 (2)1.88 (2)2.7269 (16)177 (2)
C11—H11⋯O2i0.952.543.1811 (19)125
C12—H12⋯O2ii0.952.593.4647 (19)154

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Phenyl-acetic acid-(E,E)-4,4'-(hydra-zinediylidene)dipyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25

3.  2-(4-Chloro-phen-yl)acetic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21
  3 in total
  2 in total

1.  Tramadol hydro-chloride-benzoic acid (1/1).

Authors:  B P Siddaraju; Jerry P Jasinski; James A Golen; H S Yathirajan; C R Raju
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-17

2.  Crystal structure of {[2-hy-droxy-2-(3-meth-oxy-phen-yl)cyclo-hex-yl]meth-yl}di-methyl-ammonium benzoate.

Authors:  S N Sheshadri; P Nagendra; B P Siddaraju; K H Hemakumar; K Byrappa; N K Lokanath; S Madan Kumar
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-10-17
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.