Literature DB >> 21587602

2-Phenyl-acetic acid-(E,E)-4,4'-(hydra-zinediylidene)dipyridine (2/1).

Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.   

Abstract

The asymmetric unit of the title co-crystal, C(12)H(10)N(4)·2C(8)H(8)O(2), comprises a single mol-ecule of 2-phenyl-acetic acid and half a mol-ecule of 4-pyridine-aldazine as this is situated about a centre of inversion. Mol-ecules are connected into a three component aggregate via O-H⋯N hydrogen bonds. As the carb-oxy-lic acid group is almost normal to the plane through the benzene ring to which it is attached [C-C-C-C = 93.7 (3) °], and the 4-pyridine-aldazine mol-ecule is planar (r.m.s. deviation of the 16 non-H atoms = 0.010 Å), the overall shape of the aggregate is that of an extended chair. In the crystal packing, layers of three component aggregates stack along the c axis.

Entities:  

Year:  2010        PMID: 21587602      PMCID: PMC2983171          DOI: 10.1107/S1600536810037694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystal formation involving the isomeric n-pyridine­aldazines, see: Broker et al. (2008 ▶); Arman et al. (2010 ▶).

Experimental

Crystal data

C12H10N4·2C8H8O2 M = 482.53 Monoclinic, a = 11.677 (7) Å b = 4.425 (2) Å c = 23.587 (13) Å β = 95.475 (8)° V = 1213.2 (11) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 98 K 0.40 × 0.16 × 0.05 mm

Data collection

Rigaku AFC12/SATURN724 diffractometer 5399 measured reflections 2117 independent reflections 1735 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.152 S = 1.14 2117 reflections 166 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810037694/om2363sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037694/om2363Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N4·2C8H8O2F(000) = 508
Mr = 482.53Dx = 1.321 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4281 reflections
a = 11.677 (7) Åθ = 2.4–40.2°
b = 4.425 (2) ŵ = 0.09 mm1
c = 23.587 (13) ÅT = 98 K
β = 95.475 (8)°Plate, yellow
V = 1213.2 (11) Å30.40 × 0.16 × 0.05 mm
Z = 2
Rigaku AFC12K/SATURN724 diffractometer1735 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.056
graphiteθmax = 25.0°, θmin = 2.4°
ω scansh = −13→13
5399 measured reflectionsk = −5→4
2117 independent reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0468P)2 + 0.7865P] where P = (Fo2 + 2Fc2)/3
2117 reflections(Δ/σ)max = 0.001
166 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.18146 (19)1.2809 (5)0.09616 (10)0.0316 (6)
N20.4766 (2)0.6025 (5)0.01894 (9)0.0310 (5)
C10.1394 (3)1.1780 (6)0.04489 (13)0.0361 (7)
H10.06511.24240.02980.043*
C20.2001 (2)0.9811 (6)0.01301 (12)0.0321 (6)
H20.16680.9083−0.02270.038*
C30.3098 (2)0.8921 (6)0.03387 (11)0.0269 (6)
C40.3540 (2)1.0017 (6)0.08676 (12)0.0303 (6)
H40.42900.94570.10240.036*
C50.2874 (2)1.1929 (6)0.11616 (12)0.0305 (6)
H50.31831.26570.15230.037*
C60.3752 (2)0.6842 (6)0.00068 (11)0.0291 (6)
H60.34140.6098−0.03480.035*
O10.05896 (17)1.6320 (5)0.15872 (9)0.0411 (6)
H1o0.099 (3)1.503 (8)0.1346 (15)0.062*
O2−0.07727 (18)1.5893 (5)0.08618 (9)0.0463 (6)
C7−0.2197 (2)1.6934 (6)0.18430 (11)0.0291 (6)
C8−0.3183 (2)1.6647 (6)0.14658 (11)0.0301 (6)
H8−0.32351.77090.11140.036*
C9−0.4091 (2)1.4834 (6)0.15960 (12)0.0345 (7)
H9−0.47551.46510.13330.041*
C10−0.4032 (3)1.3282 (6)0.21105 (13)0.0393 (7)
H10−0.46531.20430.22010.047*
C11−0.3063 (3)1.3562 (6)0.24861 (13)0.0417 (8)
H11−0.30171.25020.28380.050*
C12−0.2149 (3)1.5378 (6)0.23580 (12)0.0368 (7)
H12−0.14881.55570.26240.044*
C13−0.1189 (2)1.8779 (6)0.16826 (13)0.0358 (7)
H13A−0.07271.94830.20320.043*
H13B−0.14712.05760.14620.043*
C14−0.0443 (2)1.6869 (6)0.13282 (12)0.0325 (6)
U11U22U33U12U13U23
N10.0300 (13)0.0327 (12)0.0328 (13)0.0018 (10)0.0066 (11)−0.0014 (10)
N20.0320 (13)0.0324 (12)0.0296 (13)0.0028 (10)0.0081 (10)−0.0008 (10)
C10.0324 (16)0.0392 (15)0.0366 (17)0.0032 (13)0.0027 (13)−0.0021 (13)
C20.0295 (15)0.0381 (15)0.0284 (15)0.0013 (12)0.0017 (12)−0.0028 (12)
C30.0288 (14)0.0262 (13)0.0265 (14)−0.0012 (11)0.0071 (12)0.0009 (11)
C40.0300 (15)0.0309 (14)0.0303 (15)0.0026 (11)0.0037 (12)0.0007 (12)
C50.0323 (16)0.0342 (14)0.0258 (14)0.0001 (12)0.0061 (12)0.0016 (12)
C60.0334 (16)0.0290 (13)0.0252 (14)−0.0010 (12)0.0046 (12)0.0013 (11)
O10.0295 (11)0.0523 (13)0.0409 (12)0.0074 (9)0.0006 (9)−0.0177 (10)
O20.0408 (13)0.0626 (14)0.0345 (12)0.0149 (11)−0.0011 (10)−0.0111 (11)
C70.0319 (15)0.0282 (13)0.0279 (14)0.0070 (11)0.0066 (12)−0.0058 (11)
C80.0347 (16)0.0308 (14)0.0251 (14)0.0036 (12)0.0038 (12)−0.0017 (11)
C90.0326 (16)0.0350 (14)0.0363 (17)0.0025 (12)0.0054 (13)−0.0028 (13)
C100.0455 (19)0.0337 (15)0.0418 (18)0.0001 (13)0.0197 (15)−0.0055 (13)
C110.062 (2)0.0369 (16)0.0276 (16)0.0122 (15)0.0146 (15)0.0034 (13)
C120.0443 (18)0.0388 (15)0.0265 (15)0.0119 (13)−0.0004 (13)−0.0066 (12)
C130.0316 (16)0.0351 (15)0.0413 (18)0.0018 (12)0.0071 (13)−0.0111 (13)
C140.0330 (16)0.0330 (14)0.0318 (16)−0.0003 (12)0.0054 (13)0.0003 (12)
N1—C51.339 (3)O2—C141.210 (3)
N1—C11.341 (4)C7—C81.392 (4)
N2—C61.273 (3)C7—C121.393 (4)
N2—N2i1.419 (4)C7—C131.510 (4)
C1—C21.389 (4)C8—C91.387 (4)
C1—H10.9500C8—H80.9500
C2—C31.385 (4)C9—C101.390 (4)
C2—H20.9500C9—H90.9500
C3—C41.391 (4)C10—C111.374 (4)
C3—C61.468 (4)C10—H100.9500
C4—C51.380 (4)C11—C121.392 (4)
C4—H40.9500C11—H110.9500
C5—H50.9500C12—H120.9500
C6—H60.9500C13—C141.520 (4)
O1—C141.321 (3)C13—H13A0.9900
O1—H1o0.96 (4)C13—H13B0.9900
C5—N1—C1117.7 (2)C9—C8—C7120.9 (3)
C6—N2—N2i111.7 (3)C9—C8—H8119.5
N1—C1—C2122.6 (3)C7—C8—H8119.5
N1—C1—H1118.7C8—C9—C10120.3 (3)
C2—C1—H1118.7C8—C9—H9119.9
C3—C2—C1119.3 (3)C10—C9—H9119.9
C3—C2—H2120.4C11—C10—C9119.2 (3)
C1—C2—H2120.4C11—C10—H10120.4
C2—C3—C4118.1 (2)C9—C10—H10120.4
C2—C3—C6119.9 (2)C10—C11—C12120.9 (3)
C4—C3—C6122.0 (2)C10—C11—H11119.6
C5—C4—C3119.1 (3)C12—C11—H11119.6
C5—C4—H4120.5C11—C12—C7120.4 (3)
C3—C4—H4120.5C11—C12—H12119.8
N1—C5—C4123.2 (3)C7—C12—H12119.8
N1—C5—H5118.4C7—C13—C14109.8 (2)
C4—C5—H5118.4C7—C13—H13A109.7
N2—C6—C3120.8 (2)C14—C13—H13A109.7
N2—C6—H6119.6C7—C13—H13B109.7
C3—C6—H6119.6C14—C13—H13B109.7
C14—O1—H1O108 (2)H13A—C13—H13B108.2
C8—C7—C12118.3 (3)O2—C14—O1123.5 (3)
C8—C7—C13120.4 (3)O2—C14—C13123.3 (3)
C12—C7—C13121.2 (3)O1—C14—C13113.2 (2)
C5—N1—C1—C21.5 (4)C13—C7—C8—C9176.6 (2)
N1—C1—C2—C3−1.8 (4)C7—C8—C9—C100.5 (4)
C1—C2—C3—C40.9 (4)C8—C9—C10—C11−0.2 (4)
C1—C2—C3—C6−180.0 (2)C9—C10—C11—C120.2 (4)
C2—C3—C4—C50.1 (4)C10—C11—C12—C7−0.4 (4)
C6—C3—C4—C5−179.0 (2)C8—C7—C12—C110.6 (4)
C1—N1—C5—C4−0.4 (4)C13—C7—C12—C11−176.6 (2)
C3—C4—C5—N1−0.3 (4)C8—C7—C13—C14−83.5 (3)
N2i—N2—C6—C3178.9 (2)C12—C7—C13—C1493.7 (3)
C2—C3—C6—N2179.3 (2)C7—C13—C14—O264.5 (4)
C4—C3—C6—N2−1.7 (4)C7—C13—C14—O1−113.9 (3)
C12—C7—C8—C9−0.7 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N10.96 (4)1.70 (4)2.653 (3)175 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N10.96 (4)1.70 (4)2.653 (3)175 (3)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(4-Chloro-phen-yl)acetic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21
  2 in total
  3 in total

1.  2-Phenyl-acetic acid-3-{(E)-2-[(E)-pyridin-3-yl-methyl-idene]hydrazin-1-ylidenemeth-yl}pyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30

2.  Benzoic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

3.  Benzoic acid-4-{(1E)-[(E)-2-(pyridin-4-yl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.