Literature DB >> 21587652

2-Phenyl-acetic acid-3-{(E)-2-[(E)-pyridin-3-yl-methyl-idene]hydrazin-1-ylidenemeth-yl}pyridine (2/1).

Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.   

Abstract

The asymmetric unit of the title 1:2 adduct, C(12)H(10)N(4)·2C(8)H(8)O(2), comprises a single mol-ecule of 2-phenyl-acetic acid and half a mol-ecule of 3-pyridine-aldazine; the latter is completed by crystallographic inversion symmetry. In the crystal, mol-ecules are connected into a three-component aggregate via O-H⋯N hydrogen bonds. As the carboxyl group lies above the plane through the benzene ring to which it is attached [C-C-C-C = 62.24 (17)°] and the 4-pyridine-aldazine mol-ecule is almost planar (r.m.s. deviation of the 16 non-H atoms = 0.027 Å), the overall shape of the aggregate is that of a flattened extended chair. Layers of these aggregates are connected by C-H⋯O and C-H⋯π inter-actions and stack parallel to (220).

Entities:  

Year:  2010        PMID: 21587652      PMCID: PMC2983166          DOI: 10.1107/S1600536810038390

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystal formation involving the isomeric n-pyridine­aldazines, see: Broker et al. (2008 ▶); Arman et al. (2010a ▶,b ▶).

Experimental

Crystal data

C12H10N4·2C8H8O2 M = 482.53 Triclinic, a = 5.511 (2) Å b = 9.536 (4) Å c = 12.434 (6) Å α = 80.30 (2)° β = 88.45 (3)° γ = 76.46 (2)° V = 626.1 (5) Å3 Z = 1 Mo Kα radiation μ = 0.09 mm−1 T = 98 K 0.52 × 0.32 × 0.10 mm

Data collection

Rigaku AFC12/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.832, T max = 1.000 5606 measured reflections 2849 independent reflections 2578 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.130 S = 1.09 2849 reflections 166 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038390/hb5648sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038390/hb5648Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N4·2C8H8O2Z = 1
Mr = 482.53F(000) = 254
Triclinic, P1Dx = 1.280 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.511 (2) ÅCell parameters from 2727 reflections
b = 9.536 (4) Åθ = 2.6–40.1°
c = 12.434 (6) ŵ = 0.09 mm1
α = 80.30 (2)°T = 98 K
β = 88.45 (3)°Prism, gold
γ = 76.46 (2)°0.52 × 0.32 × 0.10 mm
V = 626.1 (5) Å3
Rigaku AFC12K/SATURN724 diffractometer2849 independent reflections
Radiation source: fine-focus sealed tube2578 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 27.5°, θmin = 2.6°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −6→7
Tmin = 0.832, Tmax = 1.000k = −11→12
5606 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0606P)2 + 0.17P] where P = (Fo2 + 2Fc2)/3
2849 reflections(Δ/σ)max = 0.001
166 parametersΔρmax = 0.24 e Å3
1 restraintΔρmin = −0.21 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4813 (2)0.37678 (11)0.41019 (8)0.0306 (3)
H1o0.616 (2)0.346 (2)0.3774 (15)0.046*
O20.65187 (19)0.18266 (12)0.53456 (8)0.0327 (3)
C10.4823 (3)0.28746 (15)0.50429 (11)0.0244 (3)
C20.2466 (2)0.33170 (15)0.56825 (11)0.0260 (3)
H2A0.21040.43870.56690.031*
H2B0.10590.31050.53110.031*
C30.2583 (2)0.25628 (14)0.68565 (11)0.0233 (3)
C40.4322 (3)0.27578 (15)0.75870 (11)0.0260 (3)
H40.54760.33370.73360.031*
C50.4367 (3)0.21091 (16)0.86760 (12)0.0301 (3)
H50.55500.22470.91660.036*
C60.2690 (3)0.12602 (18)0.90514 (12)0.0339 (3)
H60.27060.08290.97990.041*
C70.0988 (3)0.10450 (18)0.83273 (13)0.0347 (4)
H7−0.01420.04500.85770.042*
C80.0934 (2)0.16981 (16)0.72377 (12)0.0284 (3)
H8−0.02440.15510.67490.034*
N1−0.0907 (2)0.29342 (13)0.30452 (10)0.0282 (3)
N20.4880 (2)0.43938 (12)0.03906 (9)0.0258 (3)
C90.0632 (3)0.16205 (16)0.33502 (12)0.0296 (3)
H90.01360.09600.39260.035*
C100.2924 (3)0.11778 (16)0.28634 (12)0.0305 (3)
H100.39540.02310.30970.037*
C110.3679 (3)0.21366 (15)0.20351 (12)0.0276 (3)
H110.52330.18590.16870.033*
C120.2118 (3)0.35235 (15)0.17169 (11)0.0241 (3)
C13−0.0167 (3)0.38574 (15)0.22392 (11)0.0266 (3)
H13−0.12540.47880.20110.032*
C140.2776 (3)0.46341 (15)0.08762 (11)0.0253 (3)
H140.16240.55510.06850.030*
U11U22U33U12U13U23
O10.0334 (6)0.0296 (5)0.0252 (5)−0.0036 (4)0.0036 (4)−0.0007 (4)
O20.0301 (5)0.0331 (6)0.0281 (5)0.0021 (4)0.0024 (4)0.0004 (4)
C10.0267 (6)0.0245 (6)0.0224 (6)−0.0067 (5)−0.0020 (5)−0.0038 (5)
C20.0231 (6)0.0258 (7)0.0265 (7)−0.0022 (5)−0.0011 (5)−0.0019 (5)
C30.0214 (6)0.0223 (6)0.0242 (7)0.0001 (5)0.0008 (5)−0.0054 (5)
C40.0254 (6)0.0227 (6)0.0293 (7)−0.0025 (5)−0.0006 (5)−0.0062 (5)
C50.0280 (7)0.0319 (7)0.0281 (7)0.0025 (6)−0.0030 (5)−0.0114 (6)
C60.0312 (7)0.0391 (8)0.0242 (7)0.0028 (6)0.0036 (5)−0.0013 (6)
C70.0255 (7)0.0376 (8)0.0366 (8)−0.0053 (6)0.0057 (6)0.0019 (6)
C80.0212 (6)0.0315 (7)0.0314 (7)−0.0044 (5)−0.0010 (5)−0.0043 (6)
N10.0316 (6)0.0279 (6)0.0253 (6)−0.0074 (5)0.0043 (5)−0.0051 (5)
N20.0309 (6)0.0236 (6)0.0229 (6)−0.0070 (5)0.0021 (4)−0.0030 (5)
C90.0374 (8)0.0241 (7)0.0276 (7)−0.0091 (6)0.0017 (6)−0.0029 (5)
C100.0354 (8)0.0224 (7)0.0318 (7)−0.0037 (6)0.0017 (6)−0.0039 (6)
C110.0281 (7)0.0253 (7)0.0290 (7)−0.0039 (5)0.0024 (5)−0.0070 (5)
C120.0275 (7)0.0227 (6)0.0224 (6)−0.0056 (5)0.0006 (5)−0.0052 (5)
C130.0290 (7)0.0242 (7)0.0250 (7)−0.0030 (5)0.0012 (5)−0.0042 (5)
C140.0280 (7)0.0229 (6)0.0244 (6)−0.0042 (5)−0.0005 (5)−0.0045 (5)
O1—C11.3254 (17)C7—H70.9500
O1—H1o0.853 (9)C8—H80.9500
O2—C11.2120 (17)N1—C91.3389 (19)
C1—C21.516 (2)N1—C131.3397 (18)
C2—C31.5105 (19)N2—C141.2832 (19)
C2—H2A0.9900N2—N2i1.408 (2)
C2—H2B0.9900C9—C101.391 (2)
C3—C81.388 (2)C9—H90.9500
C3—C41.4019 (19)C10—C111.381 (2)
C4—C51.389 (2)C10—H100.9500
C4—H40.9500C11—C121.398 (2)
C5—C61.388 (2)C11—H110.9500
C5—H50.9500C12—C131.395 (2)
C6—C71.390 (2)C12—C141.4602 (19)
C6—H60.9500C13—H130.9500
C7—C81.390 (2)C14—H140.9500
C1—O1—H1O107.8 (14)C8—C7—H7119.9
O2—C1—O1123.54 (13)C3—C8—C7120.66 (14)
O2—C1—C2124.48 (13)C3—C8—H8119.7
O1—C1—C2111.98 (12)C7—C8—H8119.7
C3—C2—C1114.69 (11)C9—N1—C13117.66 (13)
C3—C2—H2A108.6C14—N2—N2i111.72 (14)
C1—C2—H2A108.6N1—C9—C10123.08 (13)
C3—C2—H2B108.6N1—C9—H9118.5
C1—C2—H2B108.6C10—C9—H9118.5
H2A—C2—H2B107.6C11—C10—C9118.95 (13)
C8—C3—C4118.88 (13)C11—C10—H10120.5
C8—C3—C2120.74 (12)C9—C10—H10120.5
C4—C3—C2120.37 (13)C10—C11—C12118.88 (13)
C5—C4—C3120.36 (14)C10—C11—H11120.6
C5—C4—H4119.8C12—C11—H11120.6
C3—C4—H4119.8C13—C12—C11117.99 (13)
C6—C5—C4120.29 (14)C13—C12—C14118.80 (12)
C6—C5—H5119.9C11—C12—C14123.21 (13)
C4—C5—H5119.9N1—C13—C12123.42 (13)
C5—C6—C7119.58 (14)N1—C13—H13118.3
C5—C6—H6120.2C12—C13—H13118.3
C7—C6—H6120.2N2—C14—C12121.22 (13)
C6—C7—C8120.21 (15)N2—C14—H14119.4
C6—C7—H7119.9C12—C14—H14119.4
O2—C1—C2—C313.2 (2)C13—N1—C9—C10−0.6 (2)
O1—C1—C2—C3−167.21 (12)N1—C9—C10—C110.8 (2)
C1—C2—C3—C8−119.47 (14)C9—C10—C11—C120.3 (2)
C1—C2—C3—C462.24 (17)C10—C11—C12—C13−1.5 (2)
C8—C3—C4—C5−0.8 (2)C10—C11—C12—C14177.93 (13)
C2—C3—C4—C5177.55 (12)C9—N1—C13—C12−0.7 (2)
C3—C4—C5—C60.0 (2)C11—C12—C13—N11.8 (2)
C4—C5—C6—C70.9 (2)C14—C12—C13—N1−177.69 (13)
C5—C6—C7—C8−1.2 (2)N2i—N2—C14—C12179.76 (13)
C4—C3—C8—C70.5 (2)C13—C12—C14—N2178.28 (13)
C2—C3—C8—C7−177.80 (13)C11—C12—C14—N2−1.1 (2)
C6—C7—C8—C30.5 (2)
Cg1 is the centroid of the C3–C8 ring.
D—H···AD—HH···AD···AD—H···A
O1—H1o···N1ii0.85 (2)1.84 (2)2.689 (2)176 (2)
C8—H8···O2iii0.952.473.398 (2)166
C10—H10···O2iv0.952.573.277 (2)132
C10—H10···Cg1iv0.952.893.627 (2)135
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C3–C8 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N1i0.85 (2)1.84 (2)2.689 (2)176 (2)
C8—H8⋯O2ii0.952.473.398 (2)166
C10—H10⋯O2iii0.952.573.277 (2)132
C10—H10⋯Cg1iii0.952.893.627 (2)135

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Phenyl-acetic acid-(E,E)-4,4'-(hydra-zinediylidene)dipyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25

3.  2-(4-Chloro-phen-yl)acetic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21
  3 in total

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