Literature DB >> 21588916

4,4'-(Ethane-1,2-diyl)dipyridinium bis-(2-hy-droxy-benzoate).

Shie Fu Lush, Fwu Ming Shen.   

Abstract

In the crystal structure of the title compound, C(12)H(14)N(2) (2+)·2C(7)H(5)O(3) (-), the cations and anions are linked via N-H⋯O hydrogen bonds and weak inter-molecular C-H⋯O inter-actions also occur. π-π stacking is observed between the nearly parallel benzene and pyridine rings [dihedral angle = 6.03 (8)°], the centroid-centroid separation being 3.7546 (16) Å. The 4,4'-(ethane-1,2-diyl)dipyridinium cation is centrosymmetric and the mid-point of the ethyl-ene C-C bond is located on an inversion center. An intra-molecular O-H⋯O hydrogen bond occurs in the anion.

Entities:  

Year:  2010        PMID: 21588916      PMCID: PMC3009235          DOI: 10.1107/S160053681003816X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 4,4′-(ethane-1,2-diyl)dipyridinium bis­(3,5-dinitro­benzoate), see: Burchell et al. (2001 ▶). For the structure of 4,4′-(ethane-1,2-diyl)dipyridinium bis­(hydrogen maleate), see: Bowes et al. (2003 ▶). For deprotonated salicylic acid, see: Chitradevi et al. (2009 ▶); Fun et al. (2010 ▶); Quah et al. (2010 ▶).

Experimental

Crystal data

C12H14N2 2+·2C7H5O3 − M = 460.47 Monoclinic, a = 8.622 (3) Å b = 6.867 (2) Å c = 19.566 (6) Å β = 101.324 (6)° V = 1135.9 (6) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 297 K 0.42 × 0.26 × 0.17 mm

Data collection

Bruker SMART CCD area-detector diffractometer 6165 measured reflections 2246 independent reflections 1645 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.147 S = 1.05 2246 reflections 155 parameters 1 restraint H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681003816X/xu5033sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003816X/xu5033Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N22+·2C7H5O3F(000) = 484
Mr = 460.47Dx = 1.346 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2343 reflections
a = 8.622 (3) Åθ = 3.6–25.9°
b = 6.867 (2) ŵ = 0.10 mm1
c = 19.566 (6) ÅT = 297 K
β = 101.324 (6)°Prism, colorless
V = 1135.9 (6) Å30.42 × 0.26 × 0.17 mm
Z = 2
Bruker SMART CCD area-detector diffractometer1645 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.053
graphiteθmax = 26.1°, θmin = 2.1°
Detector resolution: 9 pixels mm-1h = −5→10
ω scank = −8→8
6165 measured reflectionsl = −24→23
2246 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.0761P)2 + 0.1342P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2246 reflectionsΔρmax = 0.21 e Å3
155 parametersΔρmin = −0.25 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=KFc[1+0.001Fc2λ3/sin(2Θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.015 (3)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.23112 (16)0.41868 (19)0.59247 (7)0.0507 (5)
C80.30204 (19)0.4936 (2)0.54421 (9)0.0508 (6)
C90.25306 (19)0.6652 (2)0.51103 (9)0.0502 (5)
C100.12421 (17)0.7649 (2)0.52708 (8)0.0419 (5)
C110.05191 (19)0.6837 (2)0.57748 (9)0.0504 (5)
C120.1084 (2)0.5109 (3)0.60879 (10)0.0545 (6)
C130.07080 (18)0.9519 (2)0.48984 (9)0.0483 (5)
O10.32265 (15)0.10150 (17)0.65611 (7)0.0612 (5)
O20.48925 (16)0.07561 (19)0.58403 (7)0.0689 (5)
O30.67244 (17)−0.2176 (2)0.59167 (8)0.0822 (6)
C10.43333 (19)0.0129 (2)0.63306 (9)0.0463 (5)
C20.48956 (17)−0.1735 (2)0.66799 (8)0.0425 (5)
C30.4252 (2)−0.2478 (3)0.72231 (9)0.0515 (6)
C40.4772 (2)−0.4221 (3)0.75408 (10)0.0660 (7)
C50.5946 (2)−0.5245 (3)0.73117 (11)0.0696 (7)
C60.6594 (2)−0.4550 (3)0.67733 (12)0.0670 (7)
C70.6078 (2)−0.2797 (2)0.64510 (10)0.0515 (6)
H1A0.264400.311500.612900.0610*
H80.387500.427900.532500.0610*
H90.306000.715000.477800.0600*
H11−0.034300.745200.590200.0600*
H120.058700.457400.642500.0650*
H13A0.046100.926000.440200.0580*
H13B0.158301.043200.498300.0580*
H30.34550−0.178900.737600.0620*
H3A0.62520−0.114300.582300.1230*
H40.43350−0.469800.790600.0790*
H50.63030−0.641700.752400.0830*
H60.73840−0.525500.662300.0800*
U11U22U33U12U13U23
N0.0485 (8)0.0343 (7)0.0662 (9)0.0103 (6)0.0038 (7)0.0061 (6)
C80.0438 (9)0.0412 (9)0.0677 (11)0.0099 (7)0.0118 (8)0.0010 (8)
C90.0452 (9)0.0448 (9)0.0623 (10)0.0069 (7)0.0146 (7)0.0043 (8)
C100.0356 (8)0.0358 (8)0.0531 (9)0.0032 (6)0.0055 (6)0.0019 (7)
C110.0441 (9)0.0454 (9)0.0637 (10)0.0137 (7)0.0154 (8)0.0095 (8)
C120.0527 (10)0.0467 (9)0.0660 (11)0.0106 (8)0.0166 (8)0.0140 (8)
C130.0451 (9)0.0402 (9)0.0606 (10)0.0084 (7)0.0128 (7)0.0093 (8)
O10.0669 (8)0.0460 (7)0.0773 (9)0.0201 (6)0.0307 (6)0.0110 (6)
O20.0834 (10)0.0534 (8)0.0801 (9)0.0133 (7)0.0407 (8)0.0186 (7)
O30.0732 (9)0.0799 (10)0.1084 (12)0.0229 (8)0.0541 (9)0.0127 (9)
C10.0490 (9)0.0376 (8)0.0532 (10)0.0033 (7)0.0126 (7)0.0005 (7)
C20.0406 (8)0.0372 (8)0.0480 (9)0.0030 (6)0.0043 (6)−0.0019 (7)
C30.0542 (10)0.0501 (10)0.0505 (9)0.0075 (8)0.0108 (8)0.0028 (8)
C40.0771 (13)0.0583 (11)0.0598 (11)0.0060 (10)0.0067 (9)0.0159 (9)
C50.0691 (12)0.0474 (10)0.0823 (14)0.0118 (10)−0.0094 (10)0.0130 (10)
C60.0499 (11)0.0530 (11)0.0933 (15)0.0185 (9)0.0026 (10)−0.0063 (11)
C70.0415 (9)0.0474 (10)0.0657 (11)0.0045 (7)0.0111 (8)−0.0046 (8)
O1—C11.286 (2)C11—H110.9300
O2—C11.233 (2)C12—H120.9300
O3—C71.347 (2)C13—H13A0.9700
O3—H3A0.8200C13—H13B0.9700
N—C81.326 (2)C1—C21.487 (2)
N—C121.325 (2)C2—C71.397 (2)
N—H1A0.8600C2—C31.389 (2)
C8—C91.371 (2)C3—C41.382 (3)
C9—C101.392 (2)C4—C51.378 (3)
C10—C111.383 (2)C5—C61.371 (3)
C10—C131.503 (2)C6—C71.391 (3)
C11—C121.380 (3)C3—H30.9300
C13—C13i1.509 (2)C4—H40.9300
C8—H80.9300C5—H50.9300
C9—H90.9300C6—H60.9300
C7—O3—H3A101.00C13i—C13—H13B108.00
C8—N—C12119.22 (15)C13i—C13—H13A108.00
C8—N—H1A120.00O1—C1—C2116.34 (14)
C12—N—H1A120.00O2—C1—C2121.09 (15)
N—C8—C9121.90 (15)O1—C1—O2122.57 (14)
C8—C9—C10120.06 (15)C1—C2—C7119.65 (14)
C9—C10—C13119.52 (14)C3—C2—C7118.68 (15)
C11—C10—C13123.49 (14)C1—C2—C3121.65 (15)
C9—C10—C11116.99 (13)C2—C3—C4121.27 (16)
C10—C11—C12119.61 (15)C3—C4—C5119.33 (18)
N—C12—C11122.22 (17)C4—C5—C6120.56 (19)
C10—C13—C13i115.66 (13)C5—C6—C7120.48 (18)
N—C8—H8119.00O3—C7—C6118.79 (16)
C9—C8—H8119.00C2—C7—C6119.68 (16)
C8—C9—H9120.00O3—C7—C2121.52 (14)
C10—C9—H9120.00C2—C3—H3119.00
C12—C11—H11120.00C4—C3—H3119.00
C10—C11—H11120.00C3—C4—H4120.00
N—C12—H12119.00C5—C4—H4120.00
C11—C12—H12119.00C4—C5—H5120.00
C10—C13—H13B108.00C6—C5—H5120.00
H13A—C13—H13B107.00C5—C6—H6120.00
C10—C13—H13A108.00C7—C6—H6120.00
C12—N—C8—C90.7 (2)O2—C1—C2—C3−178.62 (16)
C8—N—C12—C11−0.4 (3)O2—C1—C2—C70.1 (2)
N—C8—C9—C10−0.8 (3)C1—C2—C3—C4179.41 (16)
C8—C9—C10—C110.6 (2)C7—C2—C3—C40.7 (3)
C8—C9—C10—C13−179.43 (15)C1—C2—C7—O3−0.2 (2)
C9—C10—C11—C12−0.4 (2)C1—C2—C7—C6−179.40 (16)
C13—C10—C11—C12179.70 (16)C3—C2—C7—O3178.52 (16)
C9—C10—C13—C13i179.34 (14)C3—C2—C7—C6−0.7 (3)
C11—C10—C13—C13i−0.7 (2)C2—C3—C4—C5−0.3 (3)
C10—C11—C12—N0.2 (3)C3—C4—C5—C6−0.1 (3)
C10—C13—C13i—C10i−179.97 (17)C4—C5—C6—C70.1 (3)
O1—C1—C2—C30.3 (2)C5—C6—C7—O3−178.96 (18)
O1—C1—C2—C7178.98 (15)C5—C6—C7—C20.3 (3)
D—H···AD—HH···AD···AD—H···A
N—H1A···O10.861.702.556 (2)177
O3—H3A···O20.821.762.545 (2)160
C11—H11···O3ii0.932.553.406 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H1A⋯O10.861.702.556 (2)177
O3—H3A⋯O20.821.762.545 (2)160
C11—H11⋯O3i0.932.553.406 (3)154

Symmetry code: (i) .

  7 in total

1.  Salts of 3,5-dinitrobenzoic acid with organic diamines: hydrogen-bonded supramolecular structures in one, two and three dimensions.

Authors:  C J Burchell; C Glidewell; A J Lough; G Ferguson
Journal:  Acta Crystallogr B       Date:  2001-04

2.  Salts of maleic and fumaric acids with organic polyamines: comparison of isomeric acids as building blocks in supramolecular chemistry.

Authors:  Katharine F Bowes; George Ferguson; Alan J Lough; Christopher Glidewell
Journal:  Acta Crystallogr B       Date:  2003-01-28

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  4-Amino-pyridinium 2-hy-droxy-benzoate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; Venkatachalam Rajakannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-14

5.  1,5-Dimethyl-3-oxo-2-phenyl-2,3-di-hy-dro-1H-pyrazol-4-aminium 2-hydroxy-benzoate.

Authors:  A Chitradevi; S Athimoolam; B Sridhar; S Asath Bahadur
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

6.  2-Amino-5-bromo-pyridinium 2-hy-droxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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