| Literature DB >> 23634078 |
Kaliyaperumal Thanigaimani1, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.
Abstract
In the 5-chloro-salicylate anion of the title salt, C5H6BrN2 (+)·C7H4ClO3 (-), an intra-molecular O-H⋯O hydrogen bond with an S(6) graph-set motif is formed, so that the anion is essentially planar with a dihedral angle of 1.3 (5)° between the benzene ring and the carboxyl-ate group. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms via a pair of N-H⋯O hydrogen bonds, forming an R 2 (2)(8) ring motif. The crystal structure also features N-H⋯O and weak C-H⋯O inter-actions, resulting in a layer parallel to the (10-1) plane.Entities:
Year: 2013 PMID: 23634078 PMCID: PMC3629591 DOI: 10.1107/S160053681300665X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6BrN2+·C7H4ClO3− | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 1541 reflections |
| θ = 3.9–25.8° | |
| µ = 3.38 mm−1 | |
| β = 90.662 (5)° | Needle, colourless |
| 0.31 × 0.04 × 0.03 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 4233 independent reflections |
| Radiation source: fine-focus sealed tube | 3014 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 32.7°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 8030 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 4233 reflections | Δρmax = 0.84 e Å−3 |
| 188 parameters | Δρmin = −0.98 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1558 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.037 (11) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.79689 (4) | 0.54521 (9) | 0.42592 (3) | 0.02463 (10) | |
| Cl1 | 0.50091 (11) | 0.29983 (19) | 0.90762 (8) | 0.0253 (2) | |
| O1 | 0.8634 (3) | 1.0293 (8) | 0.87224 (17) | 0.0248 (6) | |
| O2 | 0.8465 (3) | 1.1615 (5) | 0.7080 (2) | 0.0205 (6) | |
| O3 | 0.6812 (3) | 0.9496 (7) | 0.5736 (2) | 0.0239 (7) | |
| N1 | 0.9596 (4) | 0.0044 (6) | 0.2466 (2) | 0.0190 (8) | |
| N2 | 0.9338 (4) | −0.1193 (7) | 0.0762 (3) | 0.0209 (8) | |
| C1 | 0.8982 (4) | 0.0324 (11) | 0.1506 (2) | 0.0177 (7) | |
| C2 | 0.8005 (4) | 0.2245 (7) | 0.1337 (3) | 0.0196 (8) | |
| H2A | 0.7561 | 0.2495 | 0.0666 | 0.024* | |
| C3 | 0.7703 (4) | 0.3746 (7) | 0.2152 (3) | 0.0196 (8) | |
| H3A | 0.7039 | 0.5034 | 0.2050 | 0.024* | |
| C4 | 0.8375 (4) | 0.3379 (7) | 0.3134 (3) | 0.0188 (8) | |
| C5 | 0.9301 (4) | 0.1523 (7) | 0.3275 (3) | 0.0207 (8) | |
| H5A | 0.9748 | 0.1252 | 0.3943 | 0.025* | |
| C6 | 0.7012 (4) | 0.8297 (7) | 0.7544 (3) | 0.0162 (7) | |
| C7 | 0.6406 (4) | 0.8057 (8) | 0.6536 (3) | 0.0177 (7) | |
| C8 | 0.5392 (4) | 0.6258 (7) | 0.6314 (3) | 0.0223 (9) | |
| H8A | 0.4986 | 0.6110 | 0.5626 | 0.027* | |
| C9 | 0.4971 (4) | 0.4687 (7) | 0.7085 (3) | 0.0210 (8) | |
| H9A | 0.4290 | 0.3447 | 0.6932 | 0.025* | |
| C10 | 0.5563 (4) | 0.4956 (7) | 0.8089 (3) | 0.0187 (9) | |
| C11 | 0.6566 (4) | 0.6721 (7) | 0.8323 (3) | 0.0169 (8) | |
| H11A | 0.6957 | 0.6868 | 0.9016 | 0.020* | |
| C12 | 0.8105 (4) | 1.0173 (9) | 0.7811 (3) | 0.0188 (8) | |
| H1O3 | 0.721 (5) | 1.068 (16) | 0.582 (4) | 0.025 (16)* | |
| H1N1 | 1.027 (5) | −0.101 (9) | 0.256 (4) | 0.023 (12)* | |
| H1N2 | 1.000 (6) | −0.248 (12) | 0.092 (4) | 0.039 (15)* | |
| H2N2 | 0.898 (4) | −0.093 (8) | 0.013 (4) | 0.021 (11)* |
| Br1 | 0.02863 (18) | 0.02674 (19) | 0.01847 (16) | 0.0061 (3) | −0.00223 (12) | −0.0056 (2) |
| Cl1 | 0.0287 (5) | 0.0241 (5) | 0.0232 (5) | −0.0076 (4) | −0.0007 (4) | 0.0025 (4) |
| O1 | 0.0301 (12) | 0.0291 (17) | 0.0151 (11) | −0.0079 (18) | −0.0073 (9) | 0.0053 (16) |
| O2 | 0.0256 (14) | 0.0202 (14) | 0.0158 (13) | −0.0045 (12) | −0.0028 (11) | 0.0015 (11) |
| O3 | 0.0306 (18) | 0.0268 (18) | 0.0141 (14) | −0.0079 (15) | −0.0061 (12) | 0.0035 (12) |
| N1 | 0.0225 (15) | 0.020 (2) | 0.0148 (13) | 0.0051 (15) | −0.0014 (11) | −0.0013 (13) |
| N2 | 0.0232 (18) | 0.027 (2) | 0.0128 (16) | 0.0059 (15) | −0.0048 (13) | −0.0038 (14) |
| C1 | 0.0196 (15) | 0.0188 (19) | 0.0147 (14) | 0.001 (2) | 0.0000 (11) | 0.005 (2) |
| C2 | 0.023 (2) | 0.021 (2) | 0.0151 (17) | 0.0002 (16) | −0.0060 (15) | 0.0048 (15) |
| C3 | 0.0193 (19) | 0.019 (2) | 0.0204 (19) | 0.0038 (16) | −0.0021 (15) | 0.0031 (15) |
| C4 | 0.0206 (19) | 0.022 (2) | 0.0136 (17) | 0.0026 (16) | 0.0004 (14) | −0.0021 (15) |
| C5 | 0.027 (2) | 0.022 (2) | 0.0129 (17) | −0.0013 (17) | −0.0025 (15) | 0.0010 (15) |
| C6 | 0.0192 (18) | 0.0173 (19) | 0.0119 (16) | 0.0013 (15) | −0.0006 (13) | −0.0022 (14) |
| C7 | 0.0157 (17) | 0.021 (2) | 0.0158 (17) | −0.0011 (16) | −0.0032 (13) | −0.0027 (16) |
| C8 | 0.0209 (18) | 0.027 (2) | 0.0188 (18) | −0.0023 (16) | −0.0037 (15) | −0.0038 (15) |
| C9 | 0.0183 (18) | 0.023 (2) | 0.0218 (19) | −0.0046 (15) | −0.0005 (15) | −0.0051 (15) |
| C10 | 0.0198 (17) | 0.016 (3) | 0.0199 (17) | 0.0029 (14) | 0.0022 (14) | −0.0014 (14) |
| C11 | 0.0192 (18) | 0.018 (2) | 0.0130 (16) | −0.0001 (15) | −0.0019 (14) | −0.0011 (14) |
| C12 | 0.0198 (16) | 0.019 (2) | 0.0171 (15) | 0.0002 (17) | −0.0022 (12) | 0.0006 (17) |
| Br1—C4 | 1.893 (4) | C3—C4 | 1.399 (5) |
| Cl1—C10 | 1.754 (4) | C3—H3A | 0.9500 |
| O1—C12 | 1.252 (4) | C4—C5 | 1.350 (5) |
| O2—C12 | 1.284 (5) | C5—H5A | 0.9500 |
| O3—C7 | 1.359 (5) | C6—C7 | 1.396 (5) |
| O3—H1O3 | 0.77 (8) | C6—C11 | 1.398 (5) |
| N1—C1 | 1.346 (4) | C6—C12 | 1.483 (6) |
| N1—C5 | 1.357 (5) | C7—C8 | 1.393 (5) |
| N1—H1N1 | 0.86 (5) | C8—C9 | 1.382 (6) |
| N2—C1 | 1.321 (6) | C8—H8A | 0.9500 |
| N2—H1N2 | 0.96 (6) | C9—C10 | 1.389 (5) |
| N2—H2N2 | 0.88 (5) | C9—H9A | 0.9500 |
| C1—C2 | 1.412 (6) | C10—C11 | 1.375 (5) |
| C2—C3 | 1.372 (6) | C11—H11A | 0.9500 |
| C2—H2A | 0.9500 | ||
| C7—O3—H1O3 | 123 (4) | C7—C6—C11 | 118.7 (4) |
| C1—N1—C5 | 122.5 (4) | C7—C6—C12 | 122.1 (3) |
| C1—N1—H1N1 | 119 (3) | C11—C6—C12 | 119.2 (3) |
| C5—N1—H1N1 | 118 (3) | O3—C7—C8 | 117.7 (3) |
| C1—N2—H1N2 | 120 (3) | O3—C7—C6 | 121.9 (4) |
| C1—N2—H2N2 | 117 (3) | C8—C7—C6 | 120.3 (4) |
| H1N2—N2—H2N2 | 122 (4) | C9—C8—C7 | 120.6 (4) |
| N2—C1—N1 | 118.4 (4) | C9—C8—H8A | 119.7 |
| N2—C1—C2 | 123.1 (3) | C7—C8—H8A | 119.7 |
| N1—C1—C2 | 118.5 (4) | C8—C9—C10 | 118.7 (4) |
| C3—C2—C1 | 119.3 (4) | C8—C9—H9A | 120.6 |
| C3—C2—H2A | 120.4 | C10—C9—H9A | 120.6 |
| C1—C2—H2A | 120.4 | C11—C10—C9 | 121.5 (4) |
| C2—C3—C4 | 120.0 (4) | C11—C10—Cl1 | 119.6 (3) |
| C2—C3—H3A | 120.0 | C9—C10—Cl1 | 118.9 (3) |
| C4—C3—H3A | 120.0 | C10—C11—C6 | 120.1 (3) |
| C5—C4—C3 | 119.6 (4) | C10—C11—H11A | 120.0 |
| C5—C4—Br1 | 120.3 (3) | C6—C11—H11A | 120.0 |
| C3—C4—Br1 | 120.1 (3) | O1—C12—O2 | 122.9 (4) |
| C4—C5—N1 | 120.2 (4) | O1—C12—C6 | 119.7 (4) |
| C4—C5—H5A | 119.9 | O2—C12—C6 | 117.4 (3) |
| N1—C5—H5A | 119.9 | ||
| C5—N1—C1—N2 | 179.6 (4) | O3—C7—C8—C9 | 177.9 (4) |
| C5—N1—C1—C2 | 0.6 (6) | C6—C7—C8—C9 | 0.0 (6) |
| N2—C1—C2—C3 | −179.6 (4) | C7—C8—C9—C10 | 0.9 (6) |
| N1—C1—C2—C3 | −0.5 (6) | C8—C9—C10—C11 | −0.9 (6) |
| C1—C2—C3—C4 | 0.7 (6) | C8—C9—C10—Cl1 | 178.9 (3) |
| C2—C3—C4—C5 | −1.0 (6) | C9—C10—C11—C6 | 0.1 (5) |
| C2—C3—C4—Br1 | 179.8 (3) | Cl1—C10—C11—C6 | −179.7 (3) |
| C3—C4—C5—N1 | 1.0 (6) | C7—C6—C11—C10 | 0.8 (5) |
| Br1—C4—C5—N1 | −179.7 (3) | C12—C6—C11—C10 | −179.4 (3) |
| C1—N1—C5—C4 | −0.8 (6) | C7—C6—C12—O1 | −178.9 (4) |
| C11—C6—C7—O3 | −178.6 (3) | C11—C6—C12—O1 | 1.3 (6) |
| C12—C6—C7—O3 | 1.6 (6) | C7—C6—C12—O2 | 1.1 (5) |
| C11—C6—C7—C8 | −0.8 (6) | C11—C6—C12—O2 | −178.7 (3) |
| C12—C6—C7—C8 | 179.4 (3) |
| H··· | ||||
| O3—H1 | 0.77 (8) | 2.02 (5) | 2.553 (4) | 127 (6) |
| N1—H1 | 0.86 (5) | 1.82 (5) | 2.666 (4) | 172 (4) |
| N2—H1 | 0.96 (6) | 1.81 (6) | 2.770 (5) | 175 (4) |
| N2—H2 | 0.88 (5) | 1.95 (5) | 2.799 (5) | 164 (3) |
| C8—H8 | 0.95 | 2.53 | 3.410 (5) | 154 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H1O3⋯O2 | 0.77 (8) | 2.02 (5) | 2.553 (4) | 127 (6) |
| N1—H1N1⋯O2i | 0.86 (5) | 1.82 (5) | 2.666 (4) | 172 (4) |
| N2—H1N2⋯O1i | 0.96 (6) | 1.81 (6) | 2.770 (5) | 175 (4) |
| N2—H2N2⋯O1ii | 0.88 (5) | 1.95 (5) | 2.799 (5) | 164 (3) |
| C8—H8 | 0.95 | 2.53 | 3.410 (5) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) .