Literature DB >> 21588754

4-Amino-N-(4,6-dimethyl-pyrimidin-2-yl)benzene-sulfonamide-benzoic acid (1/1).

Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.   

Abstract

The constituents of the title co-crystal, C(12)H(14)N(4)O(2)S·C(7)H(6)O(2), are connected by an eight-membered hetero-synthon {⋯NCNH⋯OCOH}, whereby the carb-oxy-lic acid forms donor and acceptor hydrogen bonds with a pyrimidine N atom and the adjacent amine, respectively. The dimeric aggregates thus formed are arranged in rows with their terminal NH(2) groups forming N-H⋯O hydrogen bonds with neighbouring aggregates to form a two-dimensional array in the ac plane with an overall T-shaped topology. Layers inter-digitate along the b axis being connected by C-H⋯O, C-H⋯π and π-π [centroid-centroid distance = 3.6316 (19) Å] inter-actions.

Entities:  

Year:  2010        PMID: 21588754      PMCID: PMC3008015          DOI: 10.1107/S1600536810034094

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystal formation, see: Broker & Tiekink (2007 ▶); Ellis et al. (2009 ▶); Arman et al. (2010 ▶). For related structures of carb­oxy­lic acids with 4-amino-N-(4,6-dimethyl­pyrimidin-2-yl)benzene-1-sulfonamide, see: Caira (1991 ▶, 1992 ▶).

Experimental

Crystal data

C12H14N4O2S·C7H6O2 M = 400.45 Orthorhombic, a = 15.203 (6) Å b = 14.006 (5) Å c = 18.015 (7) Å V = 3836 (2) Å3 Z = 8 Mo Kα radiation μ = 0.20 mm−1 T = 98 K 0.35 × 0.23 × 0.10 mm

Data collection

Rigaku AFC12/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.828, T max = 1 30274 measured reflections 4404 independent reflections 4137 reflections with I > 2σ(I) R int = 0.073

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.159 S = 1.17 4404 reflections 267 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.55 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810034094/hg2707sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810034094/hg2707Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N4O2S·C7H6O2F(000) = 1680
Mr = 400.45Dx = 1.387 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ac 2abCell parameters from 16577 reflections
a = 15.203 (6) Åθ = 2.3–40.5°
b = 14.006 (5) ŵ = 0.20 mm1
c = 18.015 (7) ÅT = 98 K
V = 3836 (2) Å3Block, colourless
Z = 80.35 × 0.23 × 0.10 mm
Rigaku AFC12K/SATURN724 diffractometer4404 independent reflections
Radiation source: fine-focus sealed tube4137 reflections with I > 2σ(I)
graphiteRint = 0.073
ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −19→19
Tmin = 0.828, Tmax = 1k = −16→18
30274 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H atoms treated by a mixture of independent and constrained refinement
S = 1.17w = 1/[σ2(Fo2) + (0.0647P)2 + 3.1388P] where P = (Fo2 + 2Fc2)/3
4404 reflections(Δ/σ)max = 0.001
267 parametersΔρmax = 0.41 e Å3
5 restraintsΔρmin = −0.55 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.54508 (4)0.60684 (4)0.73129 (3)0.02568 (16)
O10.60107 (11)0.68686 (12)0.74705 (9)0.0323 (4)
O20.45840 (11)0.60392 (12)0.76309 (9)0.0310 (4)
O30.35026 (10)0.58510 (12)0.59738 (9)0.0304 (4)
O40.38399 (11)0.61521 (13)0.47864 (9)0.0334 (4)
H4O0.4377 (9)0.615 (2)0.4912 (18)0.050*
N10.72042 (15)0.23929 (16)0.79698 (14)0.0402 (5)
H1N0.7731 (10)0.2262 (19)0.7781 (16)0.048*
H2N0.6859 (14)0.1909 (14)0.8089 (16)0.048*
N20.52506 (13)0.60582 (14)0.64115 (10)0.0277 (4)
H3N0.4698 (9)0.5961 (19)0.6277 (15)0.033*
N30.67129 (12)0.61923 (13)0.60236 (10)0.0258 (4)
N40.55167 (12)0.62139 (13)0.51621 (10)0.0249 (4)
C10.68116 (15)0.32487 (17)0.78271 (12)0.0296 (5)
C20.72999 (15)0.40339 (17)0.75643 (12)0.0289 (5)
H20.79150.39650.74870.035*
C30.69052 (15)0.49023 (17)0.74168 (12)0.0279 (5)
H30.72460.54240.72410.033*
C40.59970 (14)0.50071 (16)0.75289 (12)0.0254 (4)
C50.55028 (15)0.42415 (17)0.78067 (12)0.0292 (5)
H50.48890.43150.78890.035*
C60.59063 (16)0.33828 (17)0.79608 (13)0.0317 (5)
H60.55690.28730.81600.038*
C70.58666 (14)0.61564 (15)0.58457 (12)0.0241 (4)
C80.72783 (15)0.63113 (16)0.54554 (13)0.0277 (5)
C90.69815 (16)0.63989 (17)0.47292 (13)0.0307 (5)
H90.73850.64940.43330.037*
C100.60877 (15)0.63456 (16)0.45948 (12)0.0276 (5)
C110.82379 (15)0.63460 (18)0.56559 (14)0.0342 (5)
H11A0.83010.65320.61780.051*
H11B0.85380.68140.53400.051*
H11C0.85010.57150.55810.051*
C120.57027 (17)0.64250 (19)0.38306 (13)0.0358 (5)
H12A0.50630.63510.38580.054*
H12B0.59490.59240.35130.054*
H12C0.58450.70520.36210.054*
C130.23390 (14)0.60650 (15)0.51020 (12)0.0253 (4)
C140.21086 (15)0.63324 (16)0.43783 (12)0.0268 (4)
H140.25530.64520.40190.032*
C150.12273 (15)0.64217 (17)0.41883 (13)0.0300 (5)
H150.10690.66090.37000.036*
C160.05768 (16)0.62377 (17)0.47104 (14)0.0320 (5)
H16−0.00250.62940.45760.038*
C170.08033 (16)0.59699 (18)0.54334 (14)0.0329 (5)
H170.03580.58480.57910.039*
C180.16840 (16)0.58838 (17)0.56251 (13)0.0301 (5)
H180.18410.57000.61150.036*
C190.32779 (15)0.60083 (15)0.53280 (12)0.0262 (4)
U11U22U33U12U13U23
S10.0240 (3)0.0291 (3)0.0240 (3)0.0018 (2)−0.00015 (18)−0.00016 (19)
O10.0319 (9)0.0304 (8)0.0346 (8)−0.0011 (7)−0.0027 (7)−0.0038 (7)
O20.0234 (8)0.0397 (10)0.0299 (8)0.0061 (7)0.0035 (6)0.0030 (7)
O30.0270 (8)0.0375 (9)0.0268 (8)−0.0004 (7)−0.0025 (6)0.0013 (7)
O40.0222 (8)0.0476 (10)0.0303 (8)0.0011 (7)−0.0003 (6)0.0051 (7)
N10.0340 (11)0.0322 (11)0.0544 (13)0.0047 (9)0.0073 (10)0.0061 (10)
N20.0212 (9)0.0359 (10)0.0259 (9)−0.0016 (8)−0.0031 (7)0.0042 (7)
N30.0224 (9)0.0256 (9)0.0294 (9)−0.0004 (7)0.0004 (7)0.0013 (7)
N40.0263 (9)0.0235 (9)0.0249 (9)−0.0001 (7)0.0007 (7)0.0027 (7)
C10.0294 (11)0.0307 (11)0.0288 (10)0.0018 (9)−0.0012 (9)−0.0004 (9)
C20.0226 (10)0.0366 (12)0.0275 (10)0.0012 (9)−0.0010 (8)0.0002 (9)
C30.0240 (10)0.0329 (11)0.0266 (10)−0.0035 (9)−0.0011 (8)0.0022 (9)
C40.0263 (11)0.0276 (10)0.0225 (9)0.0005 (9)−0.0015 (8)−0.0013 (8)
C50.0245 (11)0.0336 (12)0.0295 (10)−0.0020 (9)0.0017 (8)−0.0014 (9)
C60.0284 (11)0.0303 (12)0.0363 (12)−0.0040 (9)0.0020 (9)0.0014 (9)
C70.0232 (10)0.0223 (10)0.0269 (10)−0.0009 (8)−0.0009 (8)0.0016 (8)
C80.0244 (10)0.0233 (10)0.0354 (11)−0.0019 (9)0.0027 (9)−0.0003 (9)
C90.0298 (11)0.0310 (11)0.0311 (11)−0.0032 (9)0.0070 (9)0.0021 (9)
C100.0302 (11)0.0241 (10)0.0285 (10)0.0000 (9)0.0015 (8)0.0006 (8)
C110.0239 (11)0.0374 (13)0.0413 (13)−0.0013 (10)0.0009 (9)0.0018 (10)
C120.0367 (12)0.0425 (14)0.0280 (11)−0.0014 (11)0.0012 (10)0.0046 (10)
C130.0251 (10)0.0227 (10)0.0281 (10)0.0014 (8)−0.0019 (8)−0.0029 (8)
C140.0273 (11)0.0262 (10)0.0270 (10)−0.0008 (9)0.0000 (8)−0.0008 (8)
C150.0298 (11)0.0294 (11)0.0308 (11)−0.0012 (9)−0.0075 (9)−0.0019 (9)
C160.0260 (11)0.0348 (12)0.0353 (12)0.0010 (9)−0.0030 (9)−0.0028 (10)
C170.0253 (11)0.0388 (13)0.0346 (12)−0.0002 (10)0.0016 (9)0.0009 (10)
C180.0291 (11)0.0331 (12)0.0281 (11)−0.0007 (9)−0.0012 (9)0.0008 (9)
C190.0264 (11)0.0242 (10)0.0280 (10)0.0002 (8)−0.0015 (8)−0.0006 (8)
S1—O11.4358 (18)C6—H60.9500
S1—O21.4375 (17)C8—C91.389 (3)
S1—N21.652 (2)C8—C111.504 (3)
S1—C41.747 (2)C9—C101.382 (3)
O3—C191.232 (3)C9—H90.9500
O4—C191.313 (3)C10—C121.500 (3)
O4—H4O0.848 (10)C11—H11A0.9800
N1—C11.364 (3)C11—H11B0.9800
N1—H1N0.889 (9)C11—H11C0.9800
N1—H2N0.88 (2)C12—H12A0.9800
N2—C71.391 (3)C12—H12B0.9800
N2—H3N0.886 (10)C12—H12C0.9800
N3—C71.327 (3)C13—C181.394 (3)
N3—C81.347 (3)C13—C141.401 (3)
N4—C71.344 (3)C13—C191.486 (3)
N4—C101.353 (3)C14—C151.388 (3)
C1—C21.409 (3)C14—H140.9500
C1—C61.410 (3)C15—C161.389 (3)
C2—C31.382 (3)C15—H150.9500
C2—H20.9500C16—C171.398 (3)
C3—C41.403 (3)C16—H160.9500
C3—H30.9500C17—C181.388 (3)
C4—C51.402 (3)C17—H170.9500
C5—C61.378 (3)C18—H180.9500
C5—H50.9500
O1—S1—O2119.14 (10)C10—C9—C8118.6 (2)
O1—S1—N2108.07 (10)C10—C9—H9120.7
O2—S1—N2102.86 (10)C8—C9—H9120.7
O1—S1—C4109.78 (11)N4—C10—C9120.4 (2)
O2—S1—C4108.84 (10)N4—C10—C12116.9 (2)
N2—S1—C4107.40 (10)C9—C10—C12122.7 (2)
C19—O4—H4O115 (2)C8—C11—H11A109.5
C1—N1—H1N120.3 (18)C8—C11—H11B109.5
C1—N1—H2N117.5 (18)H11A—C11—H11B109.5
H1N—N1—H2N117.9 (14)C8—C11—H11C109.5
C7—N2—S1126.54 (16)H11A—C11—H11C109.5
C7—N2—H3N117.0 (18)H11B—C11—H11C109.5
S1—N2—H3N116.4 (18)C10—C12—H12A109.5
C7—N3—C8116.1 (2)C10—C12—H12B109.5
C7—N4—C10116.50 (19)H12A—C12—H12B109.5
N1—C1—C2121.3 (2)C10—C12—H12C109.5
N1—C1—C6120.8 (2)H12A—C12—H12C109.5
C2—C1—C6117.9 (2)H12B—C12—H12C109.5
C3—C2—C1121.5 (2)C18—C13—C14119.9 (2)
C3—C2—H2119.2C18—C13—C19119.4 (2)
C1—C2—H2119.2C14—C13—C19120.6 (2)
C2—C3—C4119.4 (2)C15—C14—C13119.7 (2)
C2—C3—H3120.3C15—C14—H14120.2
C4—C3—H3120.3C13—C14—H14120.2
C5—C4—C3119.9 (2)C14—C15—C16120.2 (2)
C5—C4—S1118.40 (17)C14—C15—H15119.9
C3—C4—S1121.66 (17)C16—C15—H15119.9
C6—C5—C4120.1 (2)C15—C16—C17120.3 (2)
C6—C5—H5120.0C15—C16—H16119.8
C4—C5—H5120.0C17—C16—H16119.8
C5—C6—C1121.1 (2)C18—C17—C16119.5 (2)
C5—C6—H6119.5C18—C17—H17120.2
C1—C6—H6119.5C16—C17—H17120.2
N3—C7—N4127.1 (2)C17—C18—C13120.3 (2)
N3—C7—N2118.66 (19)C17—C18—H18119.8
N4—C7—N2114.27 (19)C13—C18—H18119.8
N3—C8—C9121.3 (2)O3—C19—O4123.3 (2)
N3—C8—C11116.1 (2)O3—C19—C13122.3 (2)
C9—C8—C11122.6 (2)O4—C19—C13114.41 (19)
O1—S1—N2—C747.5 (2)S1—N2—C7—N35.5 (3)
O2—S1—N2—C7174.35 (18)S1—N2—C7—N4−173.94 (16)
C4—S1—N2—C7−70.9 (2)C7—N3—C8—C90.6 (3)
N1—C1—C2—C3179.8 (2)C7—N3—C8—C11−179.64 (19)
C6—C1—C2—C3−2.1 (3)N3—C8—C9—C10−1.1 (3)
C1—C2—C3—C4−0.2 (3)C11—C8—C9—C10179.1 (2)
C2—C3—C4—C51.7 (3)C7—N4—C10—C91.1 (3)
C2—C3—C4—S1−177.03 (17)C7—N4—C10—C12−179.1 (2)
O1—S1—C4—C5145.66 (18)C8—C9—C10—N40.2 (3)
O2—S1—C4—C513.6 (2)C8—C9—C10—C12−179.6 (2)
N2—S1—C4—C5−97.07 (19)C18—C13—C14—C150.5 (3)
O1—S1—C4—C3−35.6 (2)C19—C13—C14—C15−177.2 (2)
O2—S1—C4—C3−167.67 (17)C13—C14—C15—C16−0.6 (3)
N2—S1—C4—C381.6 (2)C14—C15—C16—C170.6 (4)
C3—C4—C5—C6−0.8 (3)C15—C16—C17—C18−0.4 (4)
S1—C4—C5—C6177.91 (17)C16—C17—C18—C130.2 (4)
C4—C5—C6—C1−1.5 (4)C14—C13—C18—C17−0.2 (3)
N1—C1—C6—C5−179.0 (2)C19—C13—C18—C17177.4 (2)
C2—C1—C6—C53.0 (3)C18—C13—C19—O3−3.6 (3)
C8—N3—C7—N40.9 (3)C14—C13—C19—O3174.0 (2)
C8—N3—C7—N2−178.43 (19)C18—C13—C19—O4177.3 (2)
C10—N4—C7—N3−1.7 (3)C14—C13—C19—O4−5.1 (3)
C10—N4—C7—N2177.64 (19)
Cg1 is the centroid of the C13–C18 ring.
D—H···AD—HH···AD···AD—H···A
O4—H4o···N40.847 (16)1.793 (16)2.639 (3)177 (3)
N2—H3n···O30.885 (15)1.904 (16)2.787 (3)176 (3)
N1—H1n···O1i0.889 (18)2.068 (18)2.952 (3)173 (3)
N1—H2n···O3ii0.88 (2)2.31 (3)3.073 (3)144 (2)
C12—H12c···O1iii0.982.583.455 (3)149
C11—H11c···Cg1iv0.982.763.672 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C13–C18 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4o⋯N40.85 (2)1.79 (2)2.639 (3)177 (3)
N2—H3n⋯O30.89 (2)1.90 (2)2.787 (3)176 (3)
N1—H1n⋯O1i0.89 (2)2.07 (2)2.952 (3)173 (3)
N1—H2n⋯O3ii0.88 (2)2.31 (3)3.073 (3)144 (2)
C12—H12c⋯O1iii0.982.583.455 (3)149
C11—H11c⋯Cg1iv0.982.763.672 (3)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Benzoic acid-2,9-dimethyl-phenanthroline (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24
  2 in total
  3 in total

1.  4-Amino-N-(4,6-dimethyl-pyrimidin-2-yl)-benzene-sulfonamide-4-nitro-benzoic acid (1/1).

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

2.  4-Amino-N-(4,6-di-methyl-pyrimidin-2-yl)benzene-sulfonamide-1,4-di-aza-bicyclo-[2.2.2]octane (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-05

3.  Differences in Coformer Interactions of the 2,4-Diaminopyrimidines Pyrimethamine and Trimethoprim.

Authors:  Lamis Alaa Eldin Refat; Ciaran O'Malley; John M Simmie; Patrick McArdle; Andrea Erxleben
Journal:  Cryst Growth Des       Date:  2022-04-08       Impact factor: 4.010

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.