| Literature DB >> 21588754 |
Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.
Abstract
The constituents of the title co-crystal, C(12)H(14)N(4)O(2)S·C(7)H(6)O(2), are connected by an eight-membered hetero-synthon {⋯NCNH⋯OCOH}, whereby the carb-oxy-lic acid forms donor and acceptor hydrogen bonds with a pyrimidine N atom and the adjacent amine, respectively. The dimeric aggregates thus formed are arranged in rows with their terminal NH(2) groups forming N-H⋯O hydrogen bonds with neighbouring aggregates to form a two-dimensional array in the ac plane with an overall T-shaped topology. Layers inter-digitate along the b axis being connected by C-H⋯O, C-H⋯π and π-π [centroid-centroid distance = 3.6316 (19) Å] inter-actions.Entities:
Year: 2010 PMID: 21588754 PMCID: PMC3008015 DOI: 10.1107/S1600536810034094
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H14N4O2S·C7H6O2 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 16577 reflections |
| θ = 2.3–40.5° | |
| µ = 0.20 mm−1 | |
| Block, colourless | |
| 0.35 × 0.23 × 0.10 mm |
| Rigaku AFC12K/SATURN724 diffractometer | 4404 independent reflections |
| Radiation source: fine-focus sealed tube | 4137 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 30274 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4404 reflections | (Δ/σ)max = 0.001 |
| 267 parameters | Δρmax = 0.41 e Å−3 |
| 5 restraints | Δρmin = −0.55 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.54508 (4) | 0.60684 (4) | 0.73129 (3) | 0.02568 (16) | |
| O1 | 0.60107 (11) | 0.68686 (12) | 0.74705 (9) | 0.0323 (4) | |
| O2 | 0.45840 (11) | 0.60392 (12) | 0.76309 (9) | 0.0310 (4) | |
| O3 | 0.35026 (10) | 0.58510 (12) | 0.59738 (9) | 0.0304 (4) | |
| O4 | 0.38399 (11) | 0.61521 (13) | 0.47864 (9) | 0.0334 (4) | |
| H4O | 0.4377 (9) | 0.615 (2) | 0.4912 (18) | 0.050* | |
| N1 | 0.72042 (15) | 0.23929 (16) | 0.79698 (14) | 0.0402 (5) | |
| H1N | 0.7731 (10) | 0.2262 (19) | 0.7781 (16) | 0.048* | |
| H2N | 0.6859 (14) | 0.1909 (14) | 0.8089 (16) | 0.048* | |
| N2 | 0.52506 (13) | 0.60582 (14) | 0.64115 (10) | 0.0277 (4) | |
| H3N | 0.4698 (9) | 0.5961 (19) | 0.6277 (15) | 0.033* | |
| N3 | 0.67129 (12) | 0.61923 (13) | 0.60236 (10) | 0.0258 (4) | |
| N4 | 0.55167 (12) | 0.62139 (13) | 0.51621 (10) | 0.0249 (4) | |
| C1 | 0.68116 (15) | 0.32487 (17) | 0.78271 (12) | 0.0296 (5) | |
| C2 | 0.72999 (15) | 0.40339 (17) | 0.75643 (12) | 0.0289 (5) | |
| H2 | 0.7915 | 0.3965 | 0.7487 | 0.035* | |
| C3 | 0.69052 (15) | 0.49023 (17) | 0.74168 (12) | 0.0279 (5) | |
| H3 | 0.7246 | 0.5424 | 0.7241 | 0.033* | |
| C4 | 0.59970 (14) | 0.50071 (16) | 0.75289 (12) | 0.0254 (4) | |
| C5 | 0.55028 (15) | 0.42415 (17) | 0.78067 (12) | 0.0292 (5) | |
| H5 | 0.4889 | 0.4315 | 0.7889 | 0.035* | |
| C6 | 0.59063 (16) | 0.33828 (17) | 0.79608 (13) | 0.0317 (5) | |
| H6 | 0.5569 | 0.2873 | 0.8160 | 0.038* | |
| C7 | 0.58666 (14) | 0.61564 (15) | 0.58457 (12) | 0.0241 (4) | |
| C8 | 0.72783 (15) | 0.63113 (16) | 0.54554 (13) | 0.0277 (5) | |
| C9 | 0.69815 (16) | 0.63989 (17) | 0.47292 (13) | 0.0307 (5) | |
| H9 | 0.7385 | 0.6494 | 0.4333 | 0.037* | |
| C10 | 0.60877 (15) | 0.63456 (16) | 0.45948 (12) | 0.0276 (5) | |
| C11 | 0.82379 (15) | 0.63460 (18) | 0.56559 (14) | 0.0342 (5) | |
| H11A | 0.8301 | 0.6532 | 0.6178 | 0.051* | |
| H11B | 0.8538 | 0.6814 | 0.5340 | 0.051* | |
| H11C | 0.8501 | 0.5715 | 0.5581 | 0.051* | |
| C12 | 0.57027 (17) | 0.64250 (19) | 0.38306 (13) | 0.0358 (5) | |
| H12A | 0.5063 | 0.6351 | 0.3858 | 0.054* | |
| H12B | 0.5949 | 0.5924 | 0.3513 | 0.054* | |
| H12C | 0.5845 | 0.7052 | 0.3621 | 0.054* | |
| C13 | 0.23390 (14) | 0.60650 (15) | 0.51020 (12) | 0.0253 (4) | |
| C14 | 0.21086 (15) | 0.63324 (16) | 0.43783 (12) | 0.0268 (4) | |
| H14 | 0.2553 | 0.6452 | 0.4019 | 0.032* | |
| C15 | 0.12273 (15) | 0.64217 (17) | 0.41883 (13) | 0.0300 (5) | |
| H15 | 0.1069 | 0.6609 | 0.3700 | 0.036* | |
| C16 | 0.05768 (16) | 0.62377 (17) | 0.47104 (14) | 0.0320 (5) | |
| H16 | −0.0025 | 0.6294 | 0.4576 | 0.038* | |
| C17 | 0.08033 (16) | 0.59699 (18) | 0.54334 (14) | 0.0329 (5) | |
| H17 | 0.0358 | 0.5848 | 0.5791 | 0.039* | |
| C18 | 0.16840 (16) | 0.58838 (17) | 0.56251 (13) | 0.0301 (5) | |
| H18 | 0.1841 | 0.5700 | 0.6115 | 0.036* | |
| C19 | 0.32779 (15) | 0.60083 (15) | 0.53280 (12) | 0.0262 (4) |
| S1 | 0.0240 (3) | 0.0291 (3) | 0.0240 (3) | 0.0018 (2) | −0.00015 (18) | −0.00016 (19) |
| O1 | 0.0319 (9) | 0.0304 (8) | 0.0346 (8) | −0.0011 (7) | −0.0027 (7) | −0.0038 (7) |
| O2 | 0.0234 (8) | 0.0397 (10) | 0.0299 (8) | 0.0061 (7) | 0.0035 (6) | 0.0030 (7) |
| O3 | 0.0270 (8) | 0.0375 (9) | 0.0268 (8) | −0.0004 (7) | −0.0025 (6) | 0.0013 (7) |
| O4 | 0.0222 (8) | 0.0476 (10) | 0.0303 (8) | 0.0011 (7) | −0.0003 (6) | 0.0051 (7) |
| N1 | 0.0340 (11) | 0.0322 (11) | 0.0544 (13) | 0.0047 (9) | 0.0073 (10) | 0.0061 (10) |
| N2 | 0.0212 (9) | 0.0359 (10) | 0.0259 (9) | −0.0016 (8) | −0.0031 (7) | 0.0042 (7) |
| N3 | 0.0224 (9) | 0.0256 (9) | 0.0294 (9) | −0.0004 (7) | 0.0004 (7) | 0.0013 (7) |
| N4 | 0.0263 (9) | 0.0235 (9) | 0.0249 (9) | −0.0001 (7) | 0.0007 (7) | 0.0027 (7) |
| C1 | 0.0294 (11) | 0.0307 (11) | 0.0288 (10) | 0.0018 (9) | −0.0012 (9) | −0.0004 (9) |
| C2 | 0.0226 (10) | 0.0366 (12) | 0.0275 (10) | 0.0012 (9) | −0.0010 (8) | 0.0002 (9) |
| C3 | 0.0240 (10) | 0.0329 (11) | 0.0266 (10) | −0.0035 (9) | −0.0011 (8) | 0.0022 (9) |
| C4 | 0.0263 (11) | 0.0276 (10) | 0.0225 (9) | 0.0005 (9) | −0.0015 (8) | −0.0013 (8) |
| C5 | 0.0245 (11) | 0.0336 (12) | 0.0295 (10) | −0.0020 (9) | 0.0017 (8) | −0.0014 (9) |
| C6 | 0.0284 (11) | 0.0303 (12) | 0.0363 (12) | −0.0040 (9) | 0.0020 (9) | 0.0014 (9) |
| C7 | 0.0232 (10) | 0.0223 (10) | 0.0269 (10) | −0.0009 (8) | −0.0009 (8) | 0.0016 (8) |
| C8 | 0.0244 (10) | 0.0233 (10) | 0.0354 (11) | −0.0019 (9) | 0.0027 (9) | −0.0003 (9) |
| C9 | 0.0298 (11) | 0.0310 (11) | 0.0311 (11) | −0.0032 (9) | 0.0070 (9) | 0.0021 (9) |
| C10 | 0.0302 (11) | 0.0241 (10) | 0.0285 (10) | 0.0000 (9) | 0.0015 (8) | 0.0006 (8) |
| C11 | 0.0239 (11) | 0.0374 (13) | 0.0413 (13) | −0.0013 (10) | 0.0009 (9) | 0.0018 (10) |
| C12 | 0.0367 (12) | 0.0425 (14) | 0.0280 (11) | −0.0014 (11) | 0.0012 (10) | 0.0046 (10) |
| C13 | 0.0251 (10) | 0.0227 (10) | 0.0281 (10) | 0.0014 (8) | −0.0019 (8) | −0.0029 (8) |
| C14 | 0.0273 (11) | 0.0262 (10) | 0.0270 (10) | −0.0008 (9) | 0.0000 (8) | −0.0008 (8) |
| C15 | 0.0298 (11) | 0.0294 (11) | 0.0308 (11) | −0.0012 (9) | −0.0075 (9) | −0.0019 (9) |
| C16 | 0.0260 (11) | 0.0348 (12) | 0.0353 (12) | 0.0010 (9) | −0.0030 (9) | −0.0028 (10) |
| C17 | 0.0253 (11) | 0.0388 (13) | 0.0346 (12) | −0.0002 (10) | 0.0016 (9) | 0.0009 (10) |
| C18 | 0.0291 (11) | 0.0331 (12) | 0.0281 (11) | −0.0007 (9) | −0.0012 (9) | 0.0008 (9) |
| C19 | 0.0264 (11) | 0.0242 (10) | 0.0280 (10) | 0.0002 (8) | −0.0015 (8) | −0.0006 (8) |
| S1—O1 | 1.4358 (18) | C6—H6 | 0.9500 |
| S1—O2 | 1.4375 (17) | C8—C9 | 1.389 (3) |
| S1—N2 | 1.652 (2) | C8—C11 | 1.504 (3) |
| S1—C4 | 1.747 (2) | C9—C10 | 1.382 (3) |
| O3—C19 | 1.232 (3) | C9—H9 | 0.9500 |
| O4—C19 | 1.313 (3) | C10—C12 | 1.500 (3) |
| O4—H4O | 0.848 (10) | C11—H11A | 0.9800 |
| N1—C1 | 1.364 (3) | C11—H11B | 0.9800 |
| N1—H1N | 0.889 (9) | C11—H11C | 0.9800 |
| N1—H2N | 0.88 (2) | C12—H12A | 0.9800 |
| N2—C7 | 1.391 (3) | C12—H12B | 0.9800 |
| N2—H3N | 0.886 (10) | C12—H12C | 0.9800 |
| N3—C7 | 1.327 (3) | C13—C18 | 1.394 (3) |
| N3—C8 | 1.347 (3) | C13—C14 | 1.401 (3) |
| N4—C7 | 1.344 (3) | C13—C19 | 1.486 (3) |
| N4—C10 | 1.353 (3) | C14—C15 | 1.388 (3) |
| C1—C2 | 1.409 (3) | C14—H14 | 0.9500 |
| C1—C6 | 1.410 (3) | C15—C16 | 1.389 (3) |
| C2—C3 | 1.382 (3) | C15—H15 | 0.9500 |
| C2—H2 | 0.9500 | C16—C17 | 1.398 (3) |
| C3—C4 | 1.403 (3) | C16—H16 | 0.9500 |
| C3—H3 | 0.9500 | C17—C18 | 1.388 (3) |
| C4—C5 | 1.402 (3) | C17—H17 | 0.9500 |
| C5—C6 | 1.378 (3) | C18—H18 | 0.9500 |
| C5—H5 | 0.9500 | ||
| O1—S1—O2 | 119.14 (10) | C10—C9—C8 | 118.6 (2) |
| O1—S1—N2 | 108.07 (10) | C10—C9—H9 | 120.7 |
| O2—S1—N2 | 102.86 (10) | C8—C9—H9 | 120.7 |
| O1—S1—C4 | 109.78 (11) | N4—C10—C9 | 120.4 (2) |
| O2—S1—C4 | 108.84 (10) | N4—C10—C12 | 116.9 (2) |
| N2—S1—C4 | 107.40 (10) | C9—C10—C12 | 122.7 (2) |
| C19—O4—H4O | 115 (2) | C8—C11—H11A | 109.5 |
| C1—N1—H1N | 120.3 (18) | C8—C11—H11B | 109.5 |
| C1—N1—H2N | 117.5 (18) | H11A—C11—H11B | 109.5 |
| H1N—N1—H2N | 117.9 (14) | C8—C11—H11C | 109.5 |
| C7—N2—S1 | 126.54 (16) | H11A—C11—H11C | 109.5 |
| C7—N2—H3N | 117.0 (18) | H11B—C11—H11C | 109.5 |
| S1—N2—H3N | 116.4 (18) | C10—C12—H12A | 109.5 |
| C7—N3—C8 | 116.1 (2) | C10—C12—H12B | 109.5 |
| C7—N4—C10 | 116.50 (19) | H12A—C12—H12B | 109.5 |
| N1—C1—C2 | 121.3 (2) | C10—C12—H12C | 109.5 |
| N1—C1—C6 | 120.8 (2) | H12A—C12—H12C | 109.5 |
| C2—C1—C6 | 117.9 (2) | H12B—C12—H12C | 109.5 |
| C3—C2—C1 | 121.5 (2) | C18—C13—C14 | 119.9 (2) |
| C3—C2—H2 | 119.2 | C18—C13—C19 | 119.4 (2) |
| C1—C2—H2 | 119.2 | C14—C13—C19 | 120.6 (2) |
| C2—C3—C4 | 119.4 (2) | C15—C14—C13 | 119.7 (2) |
| C2—C3—H3 | 120.3 | C15—C14—H14 | 120.2 |
| C4—C3—H3 | 120.3 | C13—C14—H14 | 120.2 |
| C5—C4—C3 | 119.9 (2) | C14—C15—C16 | 120.2 (2) |
| C5—C4—S1 | 118.40 (17) | C14—C15—H15 | 119.9 |
| C3—C4—S1 | 121.66 (17) | C16—C15—H15 | 119.9 |
| C6—C5—C4 | 120.1 (2) | C15—C16—C17 | 120.3 (2) |
| C6—C5—H5 | 120.0 | C15—C16—H16 | 119.8 |
| C4—C5—H5 | 120.0 | C17—C16—H16 | 119.8 |
| C5—C6—C1 | 121.1 (2) | C18—C17—C16 | 119.5 (2) |
| C5—C6—H6 | 119.5 | C18—C17—H17 | 120.2 |
| C1—C6—H6 | 119.5 | C16—C17—H17 | 120.2 |
| N3—C7—N4 | 127.1 (2) | C17—C18—C13 | 120.3 (2) |
| N3—C7—N2 | 118.66 (19) | C17—C18—H18 | 119.8 |
| N4—C7—N2 | 114.27 (19) | C13—C18—H18 | 119.8 |
| N3—C8—C9 | 121.3 (2) | O3—C19—O4 | 123.3 (2) |
| N3—C8—C11 | 116.1 (2) | O3—C19—C13 | 122.3 (2) |
| C9—C8—C11 | 122.6 (2) | O4—C19—C13 | 114.41 (19) |
| O1—S1—N2—C7 | 47.5 (2) | S1—N2—C7—N3 | 5.5 (3) |
| O2—S1—N2—C7 | 174.35 (18) | S1—N2—C7—N4 | −173.94 (16) |
| C4—S1—N2—C7 | −70.9 (2) | C7—N3—C8—C9 | 0.6 (3) |
| N1—C1—C2—C3 | 179.8 (2) | C7—N3—C8—C11 | −179.64 (19) |
| C6—C1—C2—C3 | −2.1 (3) | N3—C8—C9—C10 | −1.1 (3) |
| C1—C2—C3—C4 | −0.2 (3) | C11—C8—C9—C10 | 179.1 (2) |
| C2—C3—C4—C5 | 1.7 (3) | C7—N4—C10—C9 | 1.1 (3) |
| C2—C3—C4—S1 | −177.03 (17) | C7—N4—C10—C12 | −179.1 (2) |
| O1—S1—C4—C5 | 145.66 (18) | C8—C9—C10—N4 | 0.2 (3) |
| O2—S1—C4—C5 | 13.6 (2) | C8—C9—C10—C12 | −179.6 (2) |
| N2—S1—C4—C5 | −97.07 (19) | C18—C13—C14—C15 | 0.5 (3) |
| O1—S1—C4—C3 | −35.6 (2) | C19—C13—C14—C15 | −177.2 (2) |
| O2—S1—C4—C3 | −167.67 (17) | C13—C14—C15—C16 | −0.6 (3) |
| N2—S1—C4—C3 | 81.6 (2) | C14—C15—C16—C17 | 0.6 (4) |
| C3—C4—C5—C6 | −0.8 (3) | C15—C16—C17—C18 | −0.4 (4) |
| S1—C4—C5—C6 | 177.91 (17) | C16—C17—C18—C13 | 0.2 (4) |
| C4—C5—C6—C1 | −1.5 (4) | C14—C13—C18—C17 | −0.2 (3) |
| N1—C1—C6—C5 | −179.0 (2) | C19—C13—C18—C17 | 177.4 (2) |
| C2—C1—C6—C5 | 3.0 (3) | C18—C13—C19—O3 | −3.6 (3) |
| C8—N3—C7—N4 | 0.9 (3) | C14—C13—C19—O3 | 174.0 (2) |
| C8—N3—C7—N2 | −178.43 (19) | C18—C13—C19—O4 | 177.3 (2) |
| C10—N4—C7—N3 | −1.7 (3) | C14—C13—C19—O4 | −5.1 (3) |
| C10—N4—C7—N2 | 177.64 (19) |
| Cg1 is the centroid of the C13–C18 ring. |
| H··· | ||||
| O4—H4o···N4 | 0.847 (16) | 1.793 (16) | 2.639 (3) | 177 (3) |
| N2—H3n···O3 | 0.885 (15) | 1.904 (16) | 2.787 (3) | 176 (3) |
| N1—H1n···O1i | 0.889 (18) | 2.068 (18) | 2.952 (3) | 173 (3) |
| N1—H2n···O3ii | 0.88 (2) | 2.31 (3) | 3.073 (3) | 144 (2) |
| C12—H12c···O1iii | 0.98 | 2.58 | 3.455 (3) | 149 |
| C11—H11c···Cg1iv | 0.98 | 2.76 | 3.672 (3) | 155 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C13–C18 ring.
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4o⋯N4 | 0.85 (2) | 1.79 (2) | 2.639 (3) | 177 (3) |
| N2—H3n⋯O3 | 0.89 (2) | 1.90 (2) | 2.787 (3) | 176 (3) |
| N1—H1n⋯O1i | 0.89 (2) | 2.07 (2) | 2.952 (3) | 173 (3) |
| N1—H2n⋯O3ii | 0.88 (2) | 2.31 (3) | 3.073 (3) | 144 (2) |
| C12—H12c⋯O1iii | 0.98 | 2.58 | 3.455 (3) | 149 |
| C11—H11c⋯ | 0.98 | 2.76 | 3.672 (3) | 155 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .