Literature DB >> 21581084

2-Amino-pyridinium 4-hydroxy-benzoate.

Ching Kheng Quah1, Samuel Robinson Jebas, Hoong-Kun Fun.   

Abstract

In the title compound, C(5)H(7)N(2) (+)·C(7)H(5)O(3) (-), the carboxyl-ate mean plane of the 4-hydroxy-benzoate anion is twisted by 8.78 (5)° from the attached ring. The cations and anions are linked via O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional network. In addition, π-π inter-actions involving the benzene and pyridinium rings, with centroid-centroid distances of 3.5500 (6) and 3.6594 (6) Å, are observed.

Entities:  

Year:  2008        PMID: 21581084      PMCID: PMC2959658          DOI: 10.1107/S1600536808034934

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of 2-amino­pyridine, see: Windholz (1976 ▶). For related structures, see: Chao et al. (1975 ▶); Heath et al. (1992 ▶); Jebas & Balasubramanian (2006 ▶); Joanna & Zaworotko (2005 ▶); Smith et al. (2000 ▶).

Experimental

Crystal data

C5H7N2 +·C7H5O3 M = 232.24 Monoclinic, a = 10.0647 (2) Å b = 10.9369 (2) Å c = 10.7985 (2) Å β = 111.036 (1)° V = 1109.44 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100.0 (1) K 0.34 × 0.29 × 0.17 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.966, T max = 0.983 22398 measured reflections 5078 independent reflections 3835 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.140 S = 1.02 5078 reflections 158 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2 and SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808034934/ci2696sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034934/ci2696Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N2+·C7H5O3F(000) = 488
Mr = 232.24Dx = 1.390 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6837 reflections
a = 10.0647 (2) Åθ = 2.8–35.6°
b = 10.9369 (2) ŵ = 0.10 mm1
c = 10.7985 (2) ÅT = 100 K
β = 111.036 (1)°Block, colourless
V = 1109.44 (4) Å30.34 × 0.29 × 0.17 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer5078 independent reflections
Radiation source: fine-focus sealed tube3835 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 35.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −16→11
Tmin = 0.966, Tmax = 0.983k = −17→17
22398 measured reflectionsl = −16→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0746P)2 + 0.2186P] where P = (Fo2 + 2Fc2)/3
5078 reflections(Δ/σ)max = 0.001
158 parametersΔρmax = 0.50 e Å3
1 restraintΔρmin = −0.21 e Å3
Experimental. The data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.52173 (8)0.67777 (7)0.56764 (7)0.02345 (16)
H1O10.54350.64300.63950.035*
O20.97943 (7)1.10528 (6)0.70095 (6)0.01770 (14)
O30.88217 (8)1.12535 (7)0.48165 (6)0.02051 (14)
N10.06716 (8)0.30978 (7)0.51061 (7)0.01683 (15)
N20.18939 (9)0.28645 (8)0.73537 (8)0.02239 (17)
H1N20.13540.22540.73480.027*
H2N20.25500.30850.80820.027*
C10.81342 (9)0.89872 (8)0.69825 (8)0.01647 (16)
H1A0.88730.91800.77690.020*
C20.72397 (10)0.80096 (9)0.69536 (8)0.01740 (16)
H2A0.73870.75480.77140.021*
C30.61195 (10)0.77231 (9)0.57782 (9)0.01771 (16)
C40.59084 (11)0.84236 (10)0.46429 (9)0.02258 (19)
H4A0.51570.82430.38620.027*
C50.68141 (10)0.93876 (9)0.46745 (9)0.02087 (18)
H5A0.66730.98420.39100.025*
C60.79383 (9)0.96844 (8)0.58454 (8)0.01518 (15)
C70.89111 (9)1.07305 (8)0.58888 (8)0.01503 (15)
C80.03894 (10)0.36798 (9)0.39292 (9)0.01886 (17)
H8A−0.03480.33990.31830.023*
C90.11667 (11)0.46682 (9)0.38189 (10)0.02141 (18)
H9A0.09680.50680.30120.026*
C100.22817 (11)0.50629 (9)0.49691 (10)0.02254 (19)
H10A0.28360.57280.49190.027*
C110.25595 (10)0.44821 (9)0.61585 (10)0.02098 (18)
H11A0.32970.47500.69110.025*
C120.17140 (10)0.34698 (9)0.62328 (9)0.01766 (16)
H1N10.0145 (17)0.2453 (12)0.5101 (19)0.051 (5)*
U11U22U33U12U13U23
O10.0264 (4)0.0269 (4)0.0164 (3)−0.0110 (3)0.0069 (3)0.0002 (3)
O20.0180 (3)0.0203 (3)0.0128 (3)−0.0017 (2)0.0032 (2)−0.0020 (2)
O30.0219 (3)0.0218 (3)0.0143 (3)−0.0048 (3)0.0023 (2)0.0040 (2)
N10.0170 (3)0.0179 (3)0.0144 (3)−0.0029 (3)0.0042 (3)−0.0020 (3)
N20.0227 (4)0.0254 (4)0.0147 (3)−0.0055 (3)0.0015 (3)−0.0015 (3)
C10.0167 (4)0.0186 (4)0.0127 (3)−0.0001 (3)0.0036 (3)0.0001 (3)
C20.0189 (4)0.0194 (4)0.0136 (3)−0.0011 (3)0.0056 (3)0.0016 (3)
C30.0192 (4)0.0198 (4)0.0151 (3)−0.0037 (3)0.0073 (3)−0.0011 (3)
C40.0230 (4)0.0288 (5)0.0126 (3)−0.0093 (4)0.0024 (3)0.0002 (3)
C50.0225 (4)0.0245 (5)0.0133 (3)−0.0053 (3)0.0036 (3)0.0023 (3)
C60.0159 (3)0.0164 (4)0.0127 (3)0.0000 (3)0.0044 (3)0.0002 (3)
C70.0154 (3)0.0156 (4)0.0129 (3)0.0010 (3)0.0037 (3)0.0001 (3)
C80.0185 (4)0.0218 (4)0.0159 (4)−0.0018 (3)0.0057 (3)−0.0008 (3)
C90.0226 (4)0.0220 (4)0.0206 (4)−0.0025 (3)0.0090 (3)0.0011 (3)
C100.0210 (4)0.0205 (4)0.0276 (4)−0.0052 (3)0.0105 (4)−0.0025 (3)
C110.0169 (4)0.0213 (4)0.0229 (4)−0.0034 (3)0.0049 (3)−0.0046 (3)
C120.0162 (4)0.0190 (4)0.0163 (4)−0.0005 (3)0.0040 (3)−0.0032 (3)
O1—C31.3543 (11)C3—C41.3957 (13)
O1—H1O10.8200C4—C51.3861 (13)
O2—C71.2675 (10)C4—H4A0.93
O3—C71.2654 (10)C5—C61.3990 (12)
N1—C121.3528 (11)C5—H5A0.93
N1—C81.3571 (12)C6—C71.4956 (12)
N1—H1N10.881 (9)C8—C91.3644 (13)
N2—C121.3338 (12)C8—H8A0.93
N2—H1N20.86C9—C101.4099 (14)
N2—H2N20.86C9—H9A0.93
C1—C21.3908 (13)C10—C111.3687 (14)
C1—C61.3980 (12)C10—H10A0.93
C1—H1A0.93C11—C121.4161 (13)
C2—C31.3975 (12)C11—H11A0.93
C2—H2A0.93
C3—O1—H1O1109.5C1—C6—C5118.72 (8)
C12—N1—C8122.35 (8)C1—C6—C7120.36 (8)
C12—N1—H1N1121.1 (13)C5—C6—C7120.92 (8)
C8—N1—H1N1116.5 (13)O3—C7—O2122.89 (8)
C12—N2—H1N2120.0O3—C7—C6119.10 (7)
C12—N2—H2N2120.0O2—C7—C6118.00 (7)
H1N2—N2—H2N2120.0N1—C8—C9121.30 (9)
C2—C1—C6120.90 (8)N1—C8—H8A119.3
C2—C1—H1A119.5C9—C8—H8A119.3
C6—C1—H1A119.5C8—C9—C10117.75 (9)
C1—C2—C3119.83 (8)C8—C9—H9A121.1
C1—C2—H2A120.1C10—C9—H9A121.1
C3—C2—H2A120.1C11—C10—C9120.96 (9)
O1—C3—C4117.49 (8)C11—C10—H10A119.5
O1—C3—C2122.94 (8)C9—C10—H10A119.5
C4—C3—C2119.57 (8)C10—C11—C12119.44 (9)
C5—C4—C3120.30 (8)C10—C11—H11A120.3
C5—C4—H4A119.9C12—C11—H11A120.3
C3—C4—H4A119.9N2—C12—N1118.41 (8)
C4—C5—C6120.67 (8)N2—C12—C11123.43 (8)
C4—C5—H5A119.7N1—C12—C11118.17 (8)
C6—C5—H5A119.7
C6—C1—C2—C3−0.63 (14)C5—C6—C7—O3−8.78 (13)
C1—C2—C3—O1179.36 (9)C1—C6—C7—O2−8.40 (12)
C1—C2—C3—C4−0.07 (14)C5—C6—C7—O2171.26 (9)
O1—C3—C4—C5−178.61 (9)C12—N1—C8—C91.07 (14)
C2—C3—C4—C50.84 (15)N1—C8—C9—C100.35 (14)
C3—C4—C5—C6−0.92 (16)C8—C9—C10—C11−0.87 (15)
C2—C1—C6—C50.55 (13)C9—C10—C11—C120.02 (15)
C2—C1—C6—C7−179.78 (8)C8—N1—C12—N2178.22 (9)
C4—C5—C6—C10.22 (14)C8—N1—C12—C11−1.90 (14)
C4—C5—C6—C7−179.44 (9)C10—C11—C12—N2−178.79 (9)
C1—C6—C7—O3171.56 (8)C10—C11—C12—N11.33 (14)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O2i0.821.862.6257 (9)154
N2—H1N2···O2ii0.861.982.8224 (11)167
N2—H2N2···O3iii0.861.992.8396 (11)171
N1—H1N1···O3ii0.88 (1)1.81 (1)2.6861 (10)169 (2)
C10—H10A···O10.932.513.3482 (14)149
C11—H11A···O2i0.932.343.1899 (12)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O2i0.821.862.6257 (9)154
N2—H1N2⋯O2ii0.861.982.8224 (11)167
N2—H2N2⋯O3iii0.861.992.8396 (11)171
N1—H1N1⋯O3ii0.88 (1)1.81 (1)2.6861 (10)169 (2)
C10—H10A⋯O10.932.513.3482 (14)149
C11—H11A⋯O2i0.932.343.1899 (12)152

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

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Authors: 
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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  6 in total

1.  2-Amino-5-bromo-pyridine-4-hy-droxy-benzoic acid (1/1).

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

2.  Bis(4-amino-pyridinium) sulfate monohydrate.

Authors:  Ching Kheng Quah; Hoong-Kun Fun; Arun M Isloor; Nishitha Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

3.  2-Amino-4-methylpyridinium 2-hy-droxy-3,5-dinitro-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

4.  2-Amino-4-methyl-pyridinium 2-carb-oxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

5.  2-Amino-pyridinium 1-phenyl-cyclo-propane-1-carboxyl-ate.

Authors:  Guangwen He; Srinivasulu Aitipamula; Pui Shan Chow; Reginald B H Tan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27

6.  Bis(2-amino-pyridinium) 2,5-dicarb-oxy-benzene-1,4-dicarboxyl-ate.

Authors:  V H Rodrigues; Mohammad Hakimi; Elham Motieiyan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25
  6 in total

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