| Literature DB >> 21579783 |
Samah Toumi Akriche, Mohamed Rzaigui, Zeid Abdellah Elothman, Refaat Mohamed Mahfouz.
Abstract
The structure of the title compound, 2C(5)H(6)N(3)O(2) (+)·H(2)P(2)O(7) (2-), contains infinite (H(2)P(2)O(7) (2-))(n) layers stacked perpendicular to the a axis. TheEntities:
Year: 2010 PMID: 21579783 PMCID: PMC2979822 DOI: 10.1107/S1600536810000942
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C5H6N3O2+·H2O7P22− | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 25 reflections |
| θ = 10–12° | |
| µ = 0.32 mm−1 | |
| Prism, yellow | |
| 0.29 × 0.25 × 0.19 mm |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 30.0°, θmin = 3.3° |
| graphite | |
| non–profiled ω scans | |
| 2726 measured reflections | |
| 2724 independent reflections | 2 standard reflections every 120 min |
| 2279 reflections with | intensity decay: 3% |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.53 e Å−3 | |
| 2724 reflections | Δρmin = −0.28 e Å−3 |
| 265 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.0192 (12) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983) |
| Secondary atom site location: difference Fourier map | Flack parameter: −0.15 (11) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| P1 | 0.05181 (2) | 0.76331 (12) | 0.64677 (9) | 0.02939 (15) | |
| P2 | 0.06740 (2) | 0.49228 (13) | 0.38188 (9) | 0.02940 (15) | |
| O1 | 0.02869 (6) | 0.6068 (4) | 0.7473 (3) | 0.0388 (5) | |
| O2 | 0.03160 (6) | 1.0043 (4) | 0.6468 (3) | 0.0380 (5) | |
| H2 | 0.0432 | 1.0916 | 0.5898 | 0.057* | |
| O3 | 0.09419 (6) | 0.7686 (4) | 0.6795 (3) | 0.0406 (5) | |
| O4 | 0.04503 (6) | 0.6839 (4) | 0.4767 (2) | 0.0349 (4) | |
| O5 | 0.06725 (7) | 0.2687 (4) | 0.4645 (3) | 0.0442 (6) | |
| O6 | 0.10798 (6) | 0.5779 (4) | 0.3433 (3) | 0.0381 (5) | |
| O7 | 0.04355 (6) | 0.4892 (4) | 0.2361 (2) | 0.0367 (5) | |
| H7 | 0.0207 | 0.4592 | 0.2548 | 0.055* | |
| O8 | 0.17007 (11) | 0.0987 (8) | 1.2413 (5) | 0.0996 (14) | |
| O9 | 0.17848 (8) | 0.4036 (7) | 1.1115 (4) | 0.0796 (12) | |
| O10 | 0.17870 (9) | −0.0306 (6) | 0.8224 (4) | 0.0689 (9) | |
| O11 | 0.23687 (9) | 0.0861 (7) | 0.8703 (5) | 0.0899 (12) | |
| N1 | 0.07030 (7) | 0.3161 (5) | 0.9226 (3) | 0.0334 (5) | |
| H1 | 0.0606 | 0.4078 | 0.8567 | 0.040* | |
| N2 | 0.12502 (8) | 0.5449 (5) | 0.9194 (3) | 0.0445 (7) | |
| H2A | 0.1139 | 0.6299 | 0.8532 | 0.053* | |
| H2B | 0.1481 | 0.5788 | 0.9499 | 0.053* | |
| N3 | 0.15874 (9) | 0.2373 (7) | 1.1479 (5) | 0.0578 (9) | |
| N4 | 0.16725 (8) | 0.4967 (5) | 0.5130 (4) | 0.0396 (6) | |
| H4 | 0.1465 | 0.5191 | 0.4608 | 0.048* | |
| N5 | 0.13779 (8) | 0.1725 (6) | 0.6059 (4) | 0.0522 (8) | |
| H5A | 0.1184 | 0.1998 | 0.5479 | 0.063* | |
| H5B | 0.1374 | 0.0536 | 0.6637 | 0.063* | |
| N6 | 0.20652 (10) | 0.1031 (6) | 0.8028 (4) | 0.0548 (8) | |
| C1 | 0.04851 (9) | 0.1383 (5) | 0.9672 (4) | 0.0374 (6) | |
| H1A | 0.0236 | 0.1196 | 0.9281 | 0.045* | |
| C2 | 0.06201 (11) | −0.0169 (6) | 1.0689 (4) | 0.0450 (8) | |
| H2C | 0.0469 | −0.1431 | 1.0978 | 0.054* | |
| C3 | 0.09860 (10) | 0.0180 (6) | 1.1278 (4) | 0.0453 (8) | |
| H3 | 0.1084 | −0.0843 | 1.1986 | 0.054* | |
| C4 | 0.12081 (9) | 0.2041 (6) | 1.0822 (4) | 0.0404 (7) | |
| C5 | 0.10672 (8) | 0.3631 (5) | 0.9740 (4) | 0.0350 (6) | |
| C6 | 0.19675 (10) | 0.6453 (6) | 0.4979 (5) | 0.0470 (8) | |
| H6 | 0.1943 | 0.7678 | 0.4312 | 0.056* | |
| C7 | 0.23056 (10) | 0.6223 (7) | 0.5778 (5) | 0.0550 (10) | |
| H7C | 0.2512 | 0.7255 | 0.5652 | 0.066* | |
| C8 | 0.23302 (9) | 0.4406 (7) | 0.6779 (4) | 0.0511 (9) | |
| H8 | 0.2554 | 0.4221 | 0.7352 | 0.061* | |
| C9 | 0.20255 (9) | 0.2872 (6) | 0.6933 (4) | 0.0417 (7) | |
| C10 | 0.16813 (9) | 0.3125 (6) | 0.6061 (4) | 0.0389 (7) |
| P1 | 0.0326 (3) | 0.0309 (3) | 0.0247 (3) | −0.0046 (3) | −0.0008 (3) | 0.0044 (3) |
| P2 | 0.0323 (3) | 0.0269 (3) | 0.0291 (3) | −0.0007 (3) | 0.0004 (3) | 0.0045 (3) |
| O1 | 0.0377 (10) | 0.0429 (12) | 0.0357 (11) | −0.0058 (9) | −0.0001 (9) | 0.0130 (10) |
| O2 | 0.0473 (11) | 0.0334 (10) | 0.0333 (11) | −0.0004 (9) | 0.0047 (10) | 0.0004 (11) |
| O3 | 0.0373 (10) | 0.0474 (12) | 0.0371 (13) | −0.0090 (10) | −0.0036 (9) | 0.0097 (10) |
| O4 | 0.0379 (10) | 0.0374 (10) | 0.0293 (10) | 0.0054 (9) | −0.0045 (9) | 0.0000 (9) |
| O5 | 0.0461 (13) | 0.0321 (11) | 0.0544 (15) | −0.0020 (9) | 0.0013 (11) | 0.0162 (11) |
| O6 | 0.0336 (10) | 0.0412 (11) | 0.0394 (12) | −0.0049 (9) | 0.0003 (9) | 0.0102 (10) |
| O7 | 0.0357 (10) | 0.0457 (12) | 0.0288 (10) | −0.0050 (10) | −0.0004 (9) | −0.0028 (10) |
| O8 | 0.072 (2) | 0.126 (3) | 0.101 (3) | 0.007 (2) | −0.035 (2) | 0.058 (3) |
| O9 | 0.0414 (14) | 0.108 (3) | 0.089 (3) | −0.0142 (16) | −0.0172 (16) | 0.035 (2) |
| O10 | 0.0647 (18) | 0.073 (2) | 0.069 (2) | −0.0055 (16) | −0.0033 (15) | 0.0349 (18) |
| O11 | 0.0635 (19) | 0.114 (3) | 0.092 (3) | 0.0031 (19) | −0.025 (2) | 0.045 (3) |
| N1 | 0.0393 (13) | 0.0353 (13) | 0.0257 (11) | 0.0034 (10) | −0.0001 (9) | 0.0036 (10) |
| N2 | 0.0426 (14) | 0.0462 (16) | 0.0447 (17) | −0.0056 (12) | −0.0057 (12) | 0.0137 (13) |
| N3 | 0.0423 (15) | 0.079 (2) | 0.0518 (17) | 0.0116 (17) | −0.0067 (16) | 0.018 (2) |
| N4 | 0.0325 (11) | 0.0423 (14) | 0.0440 (15) | 0.0013 (11) | −0.0029 (11) | 0.0083 (13) |
| N5 | 0.0423 (15) | 0.0524 (17) | 0.062 (2) | −0.0119 (13) | −0.0101 (15) | 0.0222 (16) |
| N6 | 0.0492 (16) | 0.066 (2) | 0.0494 (18) | 0.0083 (16) | 0.0005 (15) | 0.0154 (17) |
| C1 | 0.0393 (15) | 0.0418 (16) | 0.0309 (14) | −0.0026 (13) | 0.0037 (13) | −0.0027 (14) |
| C2 | 0.0549 (19) | 0.0353 (16) | 0.0447 (18) | −0.0021 (15) | 0.0087 (16) | 0.0062 (15) |
| C3 | 0.0535 (17) | 0.0414 (16) | 0.0411 (19) | 0.0132 (14) | 0.0058 (15) | 0.0119 (16) |
| C4 | 0.0373 (15) | 0.0488 (18) | 0.0350 (16) | 0.0079 (13) | −0.0004 (13) | 0.0054 (15) |
| C5 | 0.0372 (14) | 0.0390 (16) | 0.0288 (13) | 0.0054 (12) | 0.0018 (12) | 0.0035 (13) |
| C6 | 0.0419 (17) | 0.0463 (18) | 0.053 (2) | −0.0023 (14) | 0.0041 (15) | 0.0086 (17) |
| C7 | 0.0374 (17) | 0.061 (2) | 0.066 (3) | −0.0102 (16) | 0.0042 (18) | 0.008 (2) |
| C8 | 0.0303 (14) | 0.072 (2) | 0.051 (2) | 0.0006 (16) | −0.0028 (15) | 0.0070 (19) |
| C9 | 0.0329 (13) | 0.0520 (18) | 0.0404 (15) | 0.0050 (13) | 0.0030 (12) | 0.0089 (16) |
| C10 | 0.0345 (14) | 0.0408 (16) | 0.0412 (16) | 0.0024 (13) | 0.0042 (13) | 0.0041 (13) |
| P1—O3 | 1.481 (2) | N4—C6 | 1.331 (4) |
| P1—O1 | 1.503 (2) | N4—C10 | 1.353 (4) |
| P1—O2 | 1.552 (2) | N4—H4 | 0.8600 |
| P1—O4 | 1.613 (2) | N5—C10 | 1.316 (4) |
| P2—O5 | 1.487 (2) | N5—H5A | 0.8600 |
| P2—O6 | 1.515 (2) | N5—H5B | 0.8600 |
| P2—O7 | 1.545 (2) | N6—C9 | 1.454 (5) |
| P2—O4 | 1.592 (2) | C1—C2 | 1.360 (5) |
| O2—H2 | 0.8200 | C1—H1A | 0.9300 |
| O7—H7 | 0.8200 | C2—C3 | 1.375 (5) |
| O8—N3 | 1.222 (5) | C2—H2C | 0.9300 |
| O9—N3 | 1.217 (5) | C3—C4 | 1.377 (5) |
| O10—N6 | 1.238 (4) | C3—H3 | 0.9300 |
| O11—N6 | 1.208 (4) | C4—C5 | 1.420 (4) |
| N1—C1 | 1.330 (4) | C6—C7 | 1.369 (5) |
| N1—C5 | 1.358 (4) | C6—H6 | 0.9300 |
| N1—H1 | 0.8600 | C7—C8 | 1.383 (5) |
| N2—C5 | 1.316 (4) | C7—H7C | 0.9300 |
| N2—H2A | 0.8600 | C8—C9 | 1.375 (5) |
| N2—H2B | 0.8600 | C8—H8 | 0.9300 |
| N3—C4 | 1.440 (4) | C9—C10 | 1.423 (5) |
| O3—P1—O1 | 114.15 (13) | O10—N6—C9 | 118.6 (3) |
| O3—P1—O2 | 114.74 (13) | N1—C1—C2 | 121.2 (3) |
| O1—P1—O2 | 107.60 (13) | N1—C1—H1A | 119.4 |
| O3—P1—O4 | 109.59 (13) | C2—C1—H1A | 119.4 |
| O1—P1—O4 | 108.93 (14) | C1—C2—C3 | 118.2 (3) |
| O2—P1—O4 | 100.93 (13) | C1—C2—H2C | 120.9 |
| O5—P2—O6 | 113.55 (13) | C3—C2—H2C | 120.9 |
| O5—P2—O7 | 114.34 (15) | C2—C3—C4 | 120.2 (3) |
| O6—P2—O7 | 107.14 (13) | C2—C3—H3 | 119.9 |
| O5—P2—O4 | 109.41 (14) | C4—C3—H3 | 119.9 |
| O6—P2—O4 | 109.76 (13) | C3—C4—C5 | 121.2 (3) |
| O7—P2—O4 | 101.99 (12) | C3—C4—N3 | 118.7 (3) |
| P1—O2—H2 | 109.5 | C5—C4—N3 | 120.1 (3) |
| P2—O4—P1 | 129.43 (14) | N2—C5—N1 | 118.0 (3) |
| P2—O7—H7 | 109.5 | N2—C5—C4 | 127.4 (3) |
| C1—N1—C5 | 124.5 (3) | N1—C5—C4 | 114.6 (3) |
| C1—N1—H1 | 117.7 | N4—C6—C7 | 121.7 (4) |
| C5—N1—H1 | 117.7 | N4—C6—H6 | 119.1 |
| C5—N2—H2A | 120.0 | C7—C6—H6 | 119.1 |
| C5—N2—H2B | 120.0 | C6—C7—C8 | 117.8 (3) |
| H2A—N2—H2B | 120.0 | C6—C7—H7C | 121.1 |
| O9—N3—O8 | 121.5 (4) | C8—C7—H7C | 121.1 |
| O9—N3—C4 | 119.7 (3) | C9—C8—C7 | 120.4 (3) |
| O8—N3—C4 | 118.8 (4) | C9—C8—H8 | 119.8 |
| C6—N4—C10 | 123.4 (3) | C7—C8—H8 | 119.8 |
| C6—N4—H4 | 118.3 | C8—C9—C10 | 120.5 (3) |
| C10—N4—H4 | 118.3 | C8—C9—N6 | 117.8 (3) |
| C10—N5—H5A | 120.0 | C10—C9—N6 | 121.7 (3) |
| C10—N5—H5B | 120.0 | N5—C10—N4 | 117.6 (3) |
| H5A—N5—H5B | 120.0 | N5—C10—C9 | 126.3 (3) |
| O11—N6—O10 | 122.7 (4) | N4—C10—C9 | 116.1 (3) |
| O11—N6—C9 | 118.7 (3) | ||
| O5—P2—O4—P1 | 53.0 (2) | N3—C4—C5—N2 | 1.9 (6) |
| O6—P2—O4—P1 | −72.2 (2) | C3—C4—C5—N1 | 0.4 (5) |
| O7—P2—O4—P1 | 174.45 (18) | N3—C4—C5—N1 | −178.7 (3) |
| O3—P1—O4—P2 | 39.2 (2) | C10—N4—C6—C7 | −0.5 (6) |
| O1—P1—O4—P2 | −86.3 (2) | N4—C6—C7—C8 | −1.1 (6) |
| O2—P1—O4—P2 | 160.61 (18) | C6—C7—C8—C9 | 1.2 (6) |
| C5—N1—C1—C2 | −1.3 (5) | C7—C8—C9—C10 | 0.2 (6) |
| N1—C1—C2—C3 | 1.6 (5) | C7—C8—C9—N6 | −178.6 (4) |
| C1—C2—C3—C4 | −0.9 (5) | O11—N6—C9—C8 | −3.4 (6) |
| C2—C3—C4—C5 | −0.1 (5) | O10—N6—C9—C8 | 177.0 (4) |
| C2—C3—C4—N3 | 179.0 (4) | O11—N6—C9—C10 | 177.8 (4) |
| O9—N3—C4—C3 | −178.4 (4) | O10—N6—C9—C10 | −1.8 (5) |
| O8—N3—C4—C3 | 0.5 (6) | C6—N4—C10—N5 | −176.9 (4) |
| O9—N3—C4—C5 | 0.7 (6) | C6—N4—C10—C9 | 1.9 (5) |
| O8—N3—C4—C5 | 179.6 (4) | C8—C9—C10—N5 | 177.0 (4) |
| C1—N1—C5—N2 | 179.7 (3) | N6—C9—C10—N5 | −4.2 (6) |
| C1—N1—C5—C4 | 0.2 (4) | C8—C9—C10—N4 | −1.7 (5) |
| C3—C4—C5—N2 | −179.0 (3) | N6—C9—C10—N4 | 177.1 (3) |
| H··· | ||||
| O2—H2···O5i | 0.82 | 1.73 | 2.549 (3) | 178 |
| O7—H7···O1ii | 0.82 | 1.73 | 2.537 (3) | 166 |
| N1—H1···O1 | 0.86 | 1.87 | 2.706 (3) | 165 |
| N2—H2A···O3 | 0.86 | 1.88 | 2.726 (4) | 168 |
| N2—H2B···O9 | 0.86 | 2.05 | 2.645 (4) | 126 |
| N4—H4···O6 | 0.86 | 1.72 | 2.582 (4) | 174 |
| N5—H5A···O5 | 0.86 | 1.95 | 2.786 (4) | 165 |
| N5—H5B···O10 | 0.86 | 2.07 | 2.669 (5) | 126 |
| N5—H5B···O3iii | 0.86 | 2.22 | 2.843 (4) | 130 |
| C2—H2C···O7iv | 0.93 | 2.46 | 3.280 (4) | 147 |
| C3—H3···O6iv | 0.93 | 2.34 | 3.208 (4) | 155 |
| C8—H8···O9v | 0.93 | 2.52 | 3.097 (4) | 120 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯O5i | 0.82 | 1.73 | 2.549 (3) | 178 |
| O7—H7⋯O1ii | 0.82 | 1.73 | 2.537 (3) | 166 |
| N1—H1⋯O1 | 0.86 | 1.87 | 2.706 (3) | 165 |
| N2—H2 | 0.86 | 1.88 | 2.726 (4) | 168 |
| N2—H2 | 0.86 | 2.05 | 2.645 (4) | 126 |
| N4—H4⋯O6 | 0.86 | 1.72 | 2.582 (4) | 174 |
| N5—H5 | 0.86 | 1.95 | 2.786 (4) | 165 |
| N5—H5 | 0.86 | 2.07 | 2.669 (5) | 126 |
| N5—H5 | 0.86 | 2.22 | 2.843 (4) | 130 |
| C2—H2 | 0.93 | 2.46 | 3.280 (4) | 147 |
| C3—H3⋯O6iv | 0.93 | 2.34 | 3.208 (4) | 155 |
| C8—H8⋯O9v | 0.93 | 2.52 | 3.097 (4) | 120 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .