Literature DB >> 21581032

4-Benzyl-pyridinium hydrogen selenate.

Wassim Maalej, Zakaria Elaoud, Tahar Mhiri, Abdelaziz Daoud, Ahmed Driss.   

Abstract

The structure of the title salt, C(12)H(12)N(+)·HSeO(4) (-), consists of infinite parallel two-dimensional planes built of 4-benzyl-pyridinium and hydrogen selenate ions that are mutually connected by strong O-H⋯O and N-H⋯O hydrogen bonds. There are no contacts other than normal van der Waals inter-actions between the layers.

Entities:  

Year:  2008        PMID: 21581032      PMCID: PMC2959523          DOI: 10.1107/S1600536808033801

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see Fleck (2006 ▶); Baran et al. (2000 ▶). For related compounds, see: Ben Hamada & Jouini (2006 ▶); Kaabi et al. (2004 ▶); Ben Djemaa et al. (2007 ▶); Gowda et al. (2007 ▶).

Experimental

Crystal data

C12H12NHSeO4 M = 314.19 Orthorhombic, a = 27.449 (5) Å b = 10.821 (6) Å c = 8.830 (1) Å V = 2623 (2) Å3 Z = 8 Mo Kα radiation μ = 2.87 mm−1 T = 289 (2) K 0.11 × 0.09 × 0.04 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.743, T max = 0.894 3179 measured reflections 2817 independent reflections 1486 reflections with I > 2σ(I) R int = 0.045 2 standard reflections frequency: 120 min intensity decay: 11%

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.087 S = 0.98 2817 reflections 207 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808033801/im2065sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033801/im2065Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N+·HSeO4F(000) = 1264
Mr = 314.19Dx = 1.592 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 25 reflections
a = 27.449 (5) Åθ = 14–16°
b = 10.821 (6) ŵ = 2.87 mm1
c = 8.830 (1) ÅT = 289 K
V = 2623 (2) Å3Prism, pink
Z = 80.11 × 0.09 × 0.04 mm
Enraf–Nonius CAD-4 diffractometer1486 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.045
graphiteθmax = 27.0°, θmin = 2.4°
Non–profiled ω/2θ scansh = 0→35
Absorption correction: ψ scan (North et al., 1968)k = 0→13
Tmin = 0.743, Tmax = 0.894l = −2→11
3179 measured reflections2 standard reflections every 120 min
2817 independent reflections intensity decay: 11%
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
Least-squares matrix: fullw = 1/[σ2(Fo2) + (0.0299P)2] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.037(Δ/σ)max = 0.001
wR(F2) = 0.087Δρmax = 0.28 e Å3
S = 0.98Δρmin = −0.30 e Å3
2817 reflectionsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
207 parametersExtinction coefficient: 0.0065 (3)
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Se0.568598 (14)0.68653 (3)0.34450 (4)0.04502 (15)
O10.53870 (10)0.8139 (2)0.3574 (4)0.0652 (8)
O20.53625 (10)0.5754 (2)0.2732 (4)0.0685 (9)
O30.61665 (10)0.7080 (3)0.2250 (4)0.0779 (10)
HO30.60650.72810.14110.11 (2)*
O40.59571 (11)0.6441 (3)0.4996 (3)0.0644 (8)
C10.22067 (18)0.5917 (5)0.6315 (6)0.0675 (14)
C20.21967 (19)0.6932 (5)0.5412 (7)0.0746 (15)
C30.25920 (19)0.7237 (5)0.4540 (6)0.0624 (13)
C40.30049 (14)0.6492 (4)0.4530 (4)0.0460 (10)
C50.30108 (17)0.5471 (4)0.5468 (6)0.0564 (12)
C60.26129 (17)0.5184 (4)0.6359 (6)0.0681 (14)
HC60.26210.44940.69880.061 (13)*
C70.3437 (2)0.6798 (6)0.3529 (6)0.0683 (14)
C80.38461 (14)0.7417 (4)0.4400 (4)0.0462 (10)
C90.38853 (17)0.8693 (4)0.4482 (5)0.0538 (11)
HC90.36620.91930.39770.046 (11)*
C100.42554 (19)0.9215 (5)0.5313 (6)0.0630 (13)
C110.45454 (18)0.7264 (5)0.5991 (6)0.0631 (13)
C120.41870 (17)0.6719 (5)0.5168 (6)0.0580 (12)
N0.45683 (14)0.8484 (4)0.6053 (5)0.0621 (11)
HC10.1926 (15)0.573 (4)0.690 (5)0.077 (15)*
HC20.1914 (18)0.742 (5)0.540 (6)0.102 (18)*
HC30.2621 (16)0.795 (4)0.388 (5)0.082 (16)*
HC50.3276 (13)0.498 (4)0.547 (4)0.058 (13)*
H1C70.334 (2)0.729 (6)0.280 (7)0.12 (2)*
H2C70.3573 (13)0.602 (4)0.309 (4)0.062 (14)*
HC100.4295 (16)1.006 (4)0.543 (5)0.090 (17)*
HC110.4786 (18)0.680 (4)0.661 (6)0.104 (19)*
HC120.4167 (16)0.587 (5)0.503 (5)0.087 (16)*
HN0.4820 (15)0.885 (4)0.664 (5)0.071 (14)*
U11U22U33U12U13U23
Se0.0483 (2)0.0418 (2)0.0450 (2)0.00559 (19)0.0005 (2)−0.0042 (2)
O10.0665 (18)0.0466 (16)0.082 (2)0.0135 (15)−0.0004 (18)−0.0093 (17)
O20.0725 (19)0.0479 (17)0.085 (2)0.0001 (16)−0.0203 (18)−0.0108 (17)
O30.0505 (17)0.120 (3)0.063 (2)0.0120 (19)0.0084 (16)0.027 (2)
O40.093 (2)0.0568 (17)0.0429 (16)0.0089 (17)−0.0115 (16)−0.0017 (15)
C10.057 (3)0.070 (3)0.075 (4)−0.022 (3)0.012 (3)−0.016 (3)
C20.054 (3)0.075 (4)0.095 (4)0.005 (3)−0.007 (3)−0.004 (4)
C30.075 (3)0.055 (3)0.057 (3)−0.002 (3)−0.013 (3)0.008 (2)
C40.053 (3)0.048 (2)0.037 (2)−0.019 (2)0.001 (2)−0.0074 (19)
C50.055 (3)0.046 (3)0.068 (3)−0.001 (2)0.007 (3)0.001 (2)
C60.084 (4)0.045 (3)0.076 (4)−0.013 (2)0.016 (3)0.013 (3)
C70.077 (3)0.081 (4)0.047 (3)−0.028 (3)0.010 (3)−0.014 (3)
C80.053 (2)0.050 (2)0.036 (2)−0.012 (2)0.011 (2)0.002 (2)
C90.060 (3)0.051 (2)0.050 (3)−0.001 (2)0.002 (2)0.014 (2)
C100.072 (3)0.051 (3)0.066 (3)−0.016 (3)0.014 (3)−0.006 (3)
C110.055 (3)0.064 (3)0.071 (3)−0.006 (3)0.008 (3)0.020 (3)
C120.062 (3)0.047 (3)0.066 (3)−0.009 (2)0.011 (2)0.005 (3)
N0.045 (2)0.082 (3)0.059 (3)−0.025 (2)0.0041 (19)0.000 (2)
Se—O11.608 (3)C6—HC60.93
Se—O21.622 (3)C7—C81.518 (6)
Se—O41.625 (3)C7—H1C70.88 (6)
Se—O31.705 (3)C7—H2C71.00 (4)
O3—HO30.82C8—C121.381 (6)
C1—C21.358 (7)C8—C91.387 (6)
C1—C61.369 (7)C9—C101.375 (6)
C1—HC10.95 (4)C9—HC90.93
C2—C31.371 (7)C10—N1.338 (6)
C2—HC20.94 (5)C10—HC100.93 (5)
C3—C41.391 (6)C11—N1.323 (6)
C3—HC30.97 (4)C11—C121.358 (7)
C4—C51.381 (6)C11—HC111.00 (5)
C4—C71.515 (6)C12—HC120.93 (5)
C5—C61.382 (6)N—HN0.95 (4)
C5—HC50.90 (4)
O1—Se—O2112.56 (15)C4—C7—C8112.4 (4)
O1—Se—O4114.59 (15)C4—C7—H1C7109 (4)
O2—Se—O4111.61 (15)C8—C7—H1C7109 (4)
O1—Se—O3108.78 (16)C4—C7—H2C7109 (2)
O2—Se—O3106.51 (16)C8—C7—H2C7107 (2)
O4—Se—O3101.89 (16)H1C7—C7—H2C7110 (5)
Se—O3—HO3109.5C12—C8—C9117.8 (4)
C2—C1—C6120.1 (5)C12—C8—C7120.6 (4)
C2—C1—HC1118 (3)C9—C8—C7121.5 (5)
C6—C1—HC1122 (3)C10—C9—C8119.6 (4)
C1—C2—C3120.6 (5)C10—C9—HC9120.2
C1—C2—HC2119 (3)C8—C9—HC9120.2
C3—C2—HC2121 (3)N—C10—C9119.5 (4)
C2—C3—C4120.6 (5)N—C10—HC10117 (3)
C2—C3—HC3126 (3)C9—C10—HC10123 (3)
C4—C3—HC3113 (3)N—C11—C12119.3 (5)
C5—C4—C3118.0 (4)N—C11—HC11117 (3)
C5—C4—C7121.0 (4)C12—C11—HC11124 (3)
C3—C4—C7121.0 (5)C11—C12—C8121.1 (5)
C4—C5—C6120.8 (4)C11—C12—HC12123 (3)
C4—C5—HC5119 (3)C8—C12—HC12116 (3)
C6—C5—HC5121 (3)C11—N—C10122.6 (5)
C1—C6—C5119.8 (5)C11—N—HN118 (3)
C1—C6—HC6120.1C10—N—HN119 (3)
C5—C6—HC6120.1
C6—C1—C2—C3−0.2 (8)C4—C7—C8—C1285.0 (6)
C1—C2—C3—C42.0 (8)C4—C7—C8—C9−93.6 (6)
C2—C3—C4—C5−2.6 (7)C12—C8—C9—C10−0.1 (6)
C2—C3—C4—C7177.9 (4)C7—C8—C9—C10178.5 (4)
C3—C4—C5—C61.6 (7)C8—C9—C10—N−1.1 (6)
C7—C4—C5—C6−178.9 (4)N—C11—C12—C8−0.2 (7)
C2—C1—C6—C5−0.8 (8)C9—C8—C12—C110.8 (6)
C4—C5—C6—C10.0 (7)C7—C8—C12—C11−177.8 (4)
C5—C4—C7—C8−78.7 (6)C12—C11—N—C10−1.1 (7)
C3—C4—C7—C8100.8 (6)C9—C10—N—C111.8 (7)
D—H···AD—HH···AD···AD—H···A
O3—HO3···O4i0.821.892.617 (4)148
N—HN···O2ii0.95 (4)1.82 (5)2.762 (5)168 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—HO3⋯O4i0.821.892.617 (4)148
N—HN⋯O2ii0.95 (4)1.82 (5)2.762 (5)168 (4)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  2-Amino-3-nitro-pyridinium hydrogen selenate.

Authors:  Samah Akriche; Mohamed Rzaigui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.