| Literature DB >> 21582137 |
B Thimme Gowda, Sabine Foro, B S Saraswathi, Hiromitsu Terao, Hartmut Fuess.
Abstract
In the amide segment of the title compound, C(12)H(15)NO(3) {systematic name: 3-[(2,6-dimethyl-phen-yl)amino-carbon-yl]propionic acid}, the N-H and C=O bonds are anti to each other. The mol-ecules are packed into a two-dimensional array via N-H⋯O and O-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21582137 PMCID: PMC2968649 DOI: 10.1107/S1600536809003833
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H15NO3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3013 reflections |
| θ = 2.7–28.0° | |
| µ = 0.09 mm−1 | |
| β = 111.16 (1)° | Prism, colourless |
| 0.50 × 0.48 × 0.40 mm | |
| Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector | 2391 independent reflections |
| Radiation source: fine-focus sealed tube | 1826 reflections with |
| graphite | |
| Rotation method data acquisition using ω and φ scans | θmax = 26.4°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 6777 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.03 | |
| 2391 reflections | Δρmax = 0.19 e Å−3 |
| 154 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.017 (4) |
| Experimental. CrysAlis RED, Oxford Diffraction Ltd., 2007 Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.12966 (19) | 0.18528 (8) | 0.03678 (19) | 0.0379 (4) | |
| C2 | 0.0916 (2) | 0.11993 (8) | 0.0772 (2) | 0.0480 (4) | |
| C3 | 0.2273 (3) | 0.07205 (10) | 0.1098 (3) | 0.0688 (6) | |
| H3 | 0.2062 | 0.0282 | 0.1376 | 0.083* | |
| C4 | 0.3924 (3) | 0.08854 (14) | 0.1016 (3) | 0.0799 (8) | |
| H4 | 0.4816 | 0.0559 | 0.1241 | 0.096* | |
| C5 | 0.4251 (3) | 0.15276 (13) | 0.0604 (3) | 0.0693 (6) | |
| H5 | 0.5369 | 0.1632 | 0.0552 | 0.083* | |
| C6 | 0.2949 (2) | 0.20310 (10) | 0.0260 (2) | 0.0483 (4) | |
| C7 | 0.00487 (18) | 0.28812 (7) | 0.11169 (19) | 0.0353 (3) | |
| C8 | −0.1610 (2) | 0.33204 (8) | 0.0593 (2) | 0.0434 (4) | |
| H8A | −0.2293 | 0.3264 | −0.0679 | 0.052* | |
| H8B | −0.2363 | 0.3174 | 0.1245 | 0.052* | |
| C9 | −0.1168 (2) | 0.40548 (8) | 0.0976 (2) | 0.0467 (4) | |
| H9A | −0.0409 | 0.4109 | 0.2229 | 0.056* | |
| H9B | −0.0499 | 0.4212 | 0.0250 | 0.056* | |
| C10 | −0.2830 (2) | 0.44735 (8) | 0.0582 (2) | 0.0473 (4) | |
| C11 | −0.0877 (3) | 0.10257 (10) | 0.0884 (3) | 0.0637 (5) | |
| H11A | −0.1803 | 0.1074 | −0.0280 | 0.076* | |
| H11B | −0.1120 | 0.1323 | 0.1717 | 0.076* | |
| H11C | −0.0854 | 0.0570 | 0.1287 | 0.076* | |
| C12 | 0.3334 (3) | 0.27264 (12) | −0.0218 (3) | 0.0662 (6) | |
| H12A | 0.3733 | 0.3001 | 0.0843 | 0.079* | |
| H12B | 0.2258 | 0.2916 | −0.1077 | 0.079* | |
| H12C | 0.4256 | 0.2709 | −0.0727 | 0.079* | |
| N1 | −0.00837 (16) | 0.23498 (6) | 0.00415 (17) | 0.0368 (3) | |
| H1N | −0.111 (2) | 0.2276 (9) | −0.079 (2) | 0.044* | |
| O1 | 0.13819 (13) | 0.30009 (6) | 0.24524 (15) | 0.0469 (3) | |
| O2 | −0.25948 (19) | 0.51129 (6) | 0.0379 (2) | 0.0750 (5) | |
| H2O | −0.363 (4) | 0.5325 (13) | 0.012 (3) | 0.090* | |
| O3 | −0.42763 (16) | 0.42371 (6) | 0.0464 (2) | 0.0714 (5) |
| C1 | 0.0333 (7) | 0.0407 (8) | 0.0329 (7) | 0.0075 (6) | 0.0038 (6) | −0.0065 (6) |
| C2 | 0.0541 (10) | 0.0393 (9) | 0.0399 (9) | 0.0074 (7) | 0.0042 (7) | −0.0068 (7) |
| C3 | 0.0865 (16) | 0.0462 (11) | 0.0573 (12) | 0.0256 (10) | 0.0061 (10) | −0.0063 (8) |
| C4 | 0.0731 (15) | 0.0875 (17) | 0.0666 (13) | 0.0504 (13) | 0.0101 (11) | −0.0078 (12) |
| C5 | 0.0444 (10) | 0.0996 (18) | 0.0593 (12) | 0.0256 (11) | 0.0134 (9) | −0.0131 (11) |
| C6 | 0.0358 (8) | 0.0675 (11) | 0.0385 (8) | 0.0078 (7) | 0.0096 (7) | −0.0073 (8) |
| C7 | 0.0270 (7) | 0.0371 (8) | 0.0365 (8) | 0.0034 (6) | 0.0052 (6) | 0.0009 (6) |
| C8 | 0.0307 (7) | 0.0399 (8) | 0.0491 (9) | 0.0082 (6) | 0.0018 (6) | −0.0039 (7) |
| C9 | 0.0341 (8) | 0.0415 (9) | 0.0577 (10) | 0.0060 (6) | 0.0084 (7) | −0.0013 (7) |
| C10 | 0.0385 (9) | 0.0376 (8) | 0.0576 (10) | 0.0057 (7) | 0.0075 (7) | −0.0053 (7) |
| C11 | 0.0671 (12) | 0.0449 (10) | 0.0697 (13) | −0.0105 (9) | 0.0132 (10) | 0.0004 (9) |
| C12 | 0.0486 (10) | 0.0862 (15) | 0.0702 (13) | −0.0092 (10) | 0.0291 (10) | 0.0006 (11) |
| N1 | 0.0258 (6) | 0.0367 (7) | 0.0384 (7) | 0.0032 (5) | 0.0001 (5) | −0.0047 (5) |
| O1 | 0.0325 (6) | 0.0498 (7) | 0.0436 (6) | 0.0089 (5) | −0.0042 (5) | −0.0094 (5) |
| O2 | 0.0473 (8) | 0.0376 (7) | 0.1347 (15) | 0.0076 (6) | 0.0263 (8) | −0.0008 (8) |
| O3 | 0.0415 (7) | 0.0434 (7) | 0.1276 (13) | 0.0085 (5) | 0.0284 (8) | 0.0044 (7) |
| C1—C6 | 1.395 (2) | C8—H8A | 0.9700 |
| C1—C2 | 1.398 (2) | C8—H8B | 0.9700 |
| C1—N1 | 1.4306 (18) | C9—C10 | 1.498 (2) |
| C2—C3 | 1.393 (2) | C9—H9A | 0.9700 |
| C2—C11 | 1.503 (3) | C9—H9B | 0.9700 |
| C3—C4 | 1.379 (3) | C10—O3 | 1.216 (2) |
| C3—H3 | 0.9300 | C10—O2 | 1.304 (2) |
| C4—C5 | 1.367 (4) | C11—H11A | 0.9600 |
| C4—H4 | 0.9300 | C11—H11B | 0.9600 |
| C5—C6 | 1.395 (3) | C11—H11C | 0.9600 |
| C5—H5 | 0.9300 | C12—H12A | 0.9600 |
| C6—C12 | 1.495 (3) | C12—H12B | 0.9600 |
| C7—O1 | 1.2260 (17) | C12—H12C | 0.9600 |
| C7—N1 | 1.3415 (19) | N1—H1N | 0.859 (18) |
| C7—C8 | 1.5115 (19) | O2—H2O | 0.88 (3) |
| C8—C9 | 1.508 (2) | ||
| C6—C1—C2 | 122.55 (15) | H8A—C8—H8B | 107.8 |
| C6—C1—N1 | 119.54 (15) | C10—C9—C8 | 111.83 (13) |
| C2—C1—N1 | 117.91 (14) | C10—C9—H9A | 109.3 |
| C3—C2—C1 | 117.43 (18) | C8—C9—H9A | 109.3 |
| C3—C2—C11 | 121.43 (18) | C10—C9—H9B | 109.3 |
| C1—C2—C11 | 121.12 (15) | C8—C9—H9B | 109.3 |
| C4—C3—C2 | 121.1 (2) | H9A—C9—H9B | 107.9 |
| C4—C3—H3 | 119.4 | O3—C10—O2 | 122.82 (15) |
| C2—C3—H3 | 119.4 | O3—C10—C9 | 122.82 (15) |
| C5—C4—C3 | 120.05 (18) | O2—C10—C9 | 114.37 (15) |
| C5—C4—H4 | 120.0 | C2—C11—H11A | 109.5 |
| C3—C4—H4 | 120.0 | C2—C11—H11B | 109.5 |
| C4—C5—C6 | 121.7 (2) | H11A—C11—H11B | 109.5 |
| C4—C5—H5 | 119.1 | C2—C11—H11C | 109.5 |
| C6—C5—H5 | 119.1 | H11A—C11—H11C | 109.5 |
| C1—C6—C5 | 117.12 (19) | H11B—C11—H11C | 109.5 |
| C1—C6—C12 | 122.35 (15) | C6—C12—H12A | 109.5 |
| C5—C6—C12 | 120.53 (18) | C6—C12—H12B | 109.5 |
| O1—C7—N1 | 123.55 (13) | H12A—C12—H12B | 109.5 |
| O1—C7—C8 | 121.63 (13) | C6—C12—H12C | 109.5 |
| N1—C7—C8 | 114.79 (12) | H12A—C12—H12C | 109.5 |
| C9—C8—C7 | 112.76 (12) | H12B—C12—H12C | 109.5 |
| C9—C8—H8A | 109.0 | C7—N1—C1 | 123.37 (12) |
| C7—C8—H8A | 109.0 | C7—N1—H1N | 117.7 (12) |
| C9—C8—H8B | 109.0 | C1—N1—H1N | 118.3 (12) |
| C7—C8—H8B | 109.0 | C10—O2—H2O | 109.4 (16) |
| C6—C1—C2—C3 | 0.9 (2) | C4—C5—C6—C1 | 0.5 (3) |
| N1—C1—C2—C3 | −179.61 (14) | C4—C5—C6—C12 | −178.95 (19) |
| C6—C1—C2—C11 | 179.75 (15) | O1—C7—C8—C9 | 36.3 (2) |
| N1—C1—C2—C11 | −0.8 (2) | N1—C7—C8—C9 | −145.43 (15) |
| C1—C2—C3—C4 | −0.3 (3) | C7—C8—C9—C10 | −175.54 (14) |
| C11—C2—C3—C4 | −179.12 (18) | C8—C9—C10—O3 | 19.1 (3) |
| C2—C3—C4—C5 | −0.2 (3) | C8—C9—C10—O2 | −161.05 (17) |
| C3—C4—C5—C6 | 0.1 (3) | O1—C7—N1—C1 | 2.0 (2) |
| C2—C1—C6—C5 | −1.0 (2) | C8—C7—N1—C1 | −176.22 (14) |
| N1—C1—C6—C5 | 179.54 (14) | C6—C1—N1—C7 | −66.5 (2) |
| C2—C1—C6—C12 | 178.40 (16) | C2—C1—N1—C7 | 114.05 (17) |
| N1—C1—C6—C12 | −1.0 (2) |
| H··· | ||||
| N1—H1N···O1i | 0.859 (18) | 2.059 (19) | 2.9120 (16) | 171.8 (17) |
| O2—H2O···O3ii | 0.88 (3) | 1.79 (3) | 2.6686 (18) | 178 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.859 (18) | 2.059 (19) | 2.9120 (16) | 171.8 (17) |
| O2—H2 | 0.88 (3) | 1.79 (3) | 2.6686 (18) | 178 (3) |
Symmetry codes: (i) ; (ii) .