Literature DB >> 21583439

3-[(3,4-Dichloro-phen-yl)amino-carbon-yl]propionic acid monohydrate.

B Thimme Gowda, Sabine Foro, B S Saraswathi, Hartmut Fuess.   

Abstract

In the crystal structure of the title compound, C(10)H(9)Cl(2)NO(3)·H(2)O, the conformations of the amide O atom and the carbonyl O atom of the acid segment are anti to the H atoms of adjacent -CH(2) groups. In the crystal, the mol-ecules are linked into a three-dimensional network through N-H⋯O and O-H⋯O inter-molecular hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583439      PMCID: PMC2977205          DOI: 10.1107/S1600536809024519

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gowda et al. (2009 ▶). For hydrogen bonds involving carboxylic acids, see: Jagannathan et al. (1994 ▶); Leiserowitz (1976 ▶). For the modeling of water H atoms, see: Nardelli (1999 ▶).

Experimental

Crystal data

C10H9Cl2NO3·H2O M = 280.10 Monoclinic, a = 9.5634 (9) Å b = 7.4527 (7) Å c = 17.292 (2) Å β = 104.35 (2)° V = 1194.0 (2) Å3 Z = 4 Cu Kα radiation μ = 4.95 mm−1 T = 299 K 0.55 × 0.50 × 0.40 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.098, T max = 0.138 2508 measured reflections 2129 independent reflections 2052 reflections with I > 2σ(I) R int = 0.072 3 standard reflections frequency: 120 min intensity decay: 1.0%

Refinement

R[F 2 > 2σ(F 2)] = 0.083 wR(F 2) = 0.212 S = 1.08 2129 reflections 167 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.92 e Å−3 Δρmin = −0.69 e Å−3 Data collection: CAD-4-PC (Enraf–Nonius, 1996 ▶); cell refinement: CAD-4-PC; data reduction: REDU4 (Stoe & Cie, 1987 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809024519/ci2838sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024519/ci2838Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9Cl2NO3·H2OF(000) = 576
Mr = 280.10Dx = 1.558 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 9.5634 (9) Åθ = 4.8–20.7°
b = 7.4527 (7) ŵ = 4.95 mm1
c = 17.292 (2) ÅT = 299 K
β = 104.35 (2)°Prism, colourless
V = 1194.0 (2) Å30.55 × 0.50 × 0.40 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer2052 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.072
graphiteθmax = 67.0°, θmin = 4.8°
ω/2θ scansh = −11→1
Absorption correction: ψ scan (North et al., 1968)k = −8→0
Tmin = 0.098, Tmax = 0.138l = −19→20
2508 measured reflections3 standard reflections every 120 min
2129 independent reflections intensity decay: 1.0%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.083H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.212w = 1/[σ2(Fo2) + (0.1684P)2 + 0.6399P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.003
2129 reflectionsΔρmax = 0.92 e Å3
167 parametersΔρmin = −0.69 e Å3
5 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.014 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.35278 (8)0.10598 (12)0.56662 (5)0.0441 (4)
Cl2−0.33021 (8)0.03602 (12)0.38996 (4)0.0449 (4)
O10.1190 (2)0.2952 (3)0.33626 (13)0.0417 (6)
O20.5845 (3)0.4233 (4)0.26373 (15)0.0534 (7)
H2O0.674 (4)0.448 (6)0.262 (3)0.064*
O30.6264 (3)0.5188 (4)0.38871 (15)0.0543 (7)
N10.1755 (3)0.3197 (3)0.47092 (15)0.0331 (6)
H1N0.240 (4)0.353 (5)0.511 (2)0.040*
C10.0452 (3)0.2667 (4)0.48923 (17)0.0301 (7)
C20.0368 (3)0.2923 (4)0.56697 (18)0.0345 (7)
H20.11380.34460.60360.041*
C3−0.0840 (3)0.2416 (4)0.59077 (18)0.0367 (7)
H3−0.08790.25820.64350.044*
C4−0.2005 (3)0.1652 (4)0.53626 (17)0.0319 (7)
C5−0.1905 (3)0.1364 (4)0.45895 (17)0.0315 (7)
C6−0.0693 (3)0.1877 (4)0.43433 (17)0.0325 (7)
H6−0.06460.16960.38180.039*
C70.2060 (3)0.3302 (4)0.39971 (17)0.0311 (7)
C80.3601 (3)0.3889 (4)0.40446 (18)0.0360 (7)
H8A0.37730.50340.43190.043*
H8B0.42600.30220.43590.043*
C90.3923 (4)0.4068 (7)0.3247 (2)0.0566 (11)
H9A0.32940.49730.29390.068*
H9B0.37170.29380.29630.068*
C100.5465 (3)0.4577 (5)0.33053 (19)0.0400 (8)
O40.1421 (3)0.9875 (5)0.23932 (16)0.0570 (8)
H410.070 (4)0.945 (6)0.209 (3)0.068*
H420.116 (5)1.059 (6)0.271 (3)0.068*
U11U22U33U12U13U23
Cl10.0340 (5)0.0587 (6)0.0425 (6)−0.0077 (3)0.0149 (4)0.0020 (3)
Cl20.0329 (5)0.0645 (7)0.0332 (6)−0.0134 (3)0.0003 (4)−0.0034 (3)
O10.0306 (11)0.0668 (15)0.0259 (11)−0.0049 (10)0.0035 (9)−0.0020 (9)
O20.0391 (13)0.0936 (19)0.0297 (13)−0.0109 (13)0.0123 (10)0.0014 (12)
O30.0375 (13)0.0839 (19)0.0395 (14)−0.0159 (13)0.0058 (11)−0.0119 (13)
N10.0270 (12)0.0455 (14)0.0256 (13)−0.0077 (10)0.0045 (10)−0.0018 (10)
C10.0263 (13)0.0343 (14)0.0291 (15)0.0006 (10)0.0057 (11)0.0034 (11)
C20.0326 (15)0.0411 (15)0.0279 (15)−0.0056 (12)0.0039 (12)−0.0048 (11)
C30.0392 (16)0.0438 (16)0.0281 (15)−0.0024 (12)0.0103 (12)−0.0045 (12)
C40.0273 (14)0.0380 (14)0.0310 (14)−0.0010 (11)0.0085 (11)0.0037 (11)
C50.0265 (14)0.0372 (14)0.0272 (14)−0.0027 (11)−0.0001 (11)0.0022 (11)
C60.0313 (14)0.0417 (16)0.0237 (14)−0.0022 (11)0.0055 (11)0.0017 (11)
C70.0255 (14)0.0359 (14)0.0301 (14)0.0002 (11)0.0039 (11)0.0017 (11)
C80.0299 (15)0.0489 (17)0.0288 (16)−0.0071 (12)0.0063 (12)0.0003 (12)
C90.0322 (18)0.110 (3)0.0274 (17)−0.0167 (18)0.0062 (13)−0.0016 (17)
C100.0315 (16)0.060 (2)0.0281 (15)−0.0061 (13)0.0071 (12)0.0040 (13)
O40.0364 (13)0.094 (2)0.0387 (14)−0.0004 (13)0.0064 (11)−0.0163 (14)
Cl1—C41.723 (3)C3—H30.93
Cl2—C51.726 (3)C4—C51.381 (4)
O1—C71.229 (4)C5—C61.384 (4)
O2—C101.319 (4)C6—H60.93
O2—H2O0.88 (3)C7—C81.520 (4)
O3—C101.193 (4)C8—C91.492 (5)
N1—C71.337 (4)C8—H8A0.97
N1—C11.415 (4)C8—H8B0.97
N1—H1N0.84 (3)C9—C101.501 (4)
C1—C21.380 (4)C9—H9A0.97
C1—C61.390 (4)C9—H9B0.97
C2—C31.372 (4)O4—H410.82 (3)
C2—H20.93O4—H420.84 (3)
C3—C41.390 (4)
C10—O2—H2O118 (3)C1—C6—H6120.5
C7—N1—C1128.9 (2)O1—C7—N1123.8 (3)
C7—N1—H1N117 (3)O1—C7—C8122.8 (3)
C1—N1—H1N114 (3)N1—C7—C8113.4 (3)
C2—C1—C6119.8 (3)C9—C8—C7113.3 (3)
C2—C1—N1116.5 (3)C9—C8—H8A108.9
C6—C1—N1123.6 (3)C7—C8—H8A108.9
C3—C2—C1120.7 (3)C9—C8—H8B108.9
C3—C2—H2119.6C7—C8—H8B108.9
C1—C2—H2119.6H8A—C8—H8B107.7
C2—C3—C4120.2 (3)C8—C9—C10112.6 (3)
C2—C3—H3119.9C8—C9—H9A109.1
C4—C3—H3119.9C10—C9—H9A109.1
C5—C4—C3118.9 (3)C8—C9—H9B109.1
C5—C4—Cl1121.4 (2)C10—C9—H9B109.1
C3—C4—Cl1119.6 (2)H9A—C9—H9B107.8
C4—C5—C6121.3 (3)O3—C10—O2123.7 (3)
C4—C5—Cl2120.6 (2)O3—C10—C9124.5 (3)
C6—C5—Cl2118.1 (2)O2—C10—C9111.8 (3)
C5—C6—C1119.0 (3)H41—O4—H42109 (4)
C5—C6—H6120.5
C7—N1—C1—C2−171.2 (3)C4—C5—C6—C11.2 (4)
C7—N1—C1—C610.6 (5)Cl2—C5—C6—C1−179.2 (2)
C6—C1—C2—C3−0.3 (5)C2—C1—C6—C50.1 (4)
N1—C1—C2—C3−178.6 (3)N1—C1—C6—C5178.3 (3)
C1—C2—C3—C4−0.8 (5)C1—N1—C7—O11.1 (5)
C2—C3—C4—C52.1 (5)C1—N1—C7—C8−178.6 (3)
C2—C3—C4—Cl1−178.8 (3)O1—C7—C8—C92.4 (5)
C3—C4—C5—C6−2.3 (4)N1—C7—C8—C9−177.9 (3)
Cl1—C4—C5—C6178.6 (2)C7—C8—C9—C10−177.7 (3)
C3—C4—C5—Cl2178.1 (2)C8—C9—C10—O3−16.9 (6)
Cl1—C4—C5—Cl2−1.0 (4)C8—C9—C10—O2161.8 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2O···O4i0.88 (3)1.79 (3)2.672 (4)177 (5)
N1—H1N···O3ii0.84 (3)2.11 (3)2.941 (4)168 (4)
O4—H41···O1iii0.82 (3)2.11 (4)2.894 (4)162 (5)
O4—H42···O1iv0.84 (3)2.09 (3)2.881 (4)156 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O4i0.88 (3)1.79 (3)2.672 (4)177 (5)
N1—H1N⋯O3ii0.84 (3)2.11 (3)2.941 (4)168 (4)
O4—H41⋯O1iii0.82 (3)2.11 (4)2.894 (4)162 (5)
O4—H42⋯O1iv0.84 (3)2.09 (3)2.881 (4)156 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-[(3,5-Dichloro-anilino)carbon-yl]propionic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hiromitsu Terao; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25

3.  N-(2,6-Dimethyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hiromitsu Terao; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-06

4.  N-(2-Chloro-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hiromitsu Terao; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-28

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  N-(3,4-Dimethyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-23
  1 in total

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