| Literature DB >> 21578399 |
B Thimme Gowda, Miroslav Tokarčík, Jozef Kožíšek, K Shakuntala, Hartmut Fuess.
Abstract
The asymmetric unit of the title compound, C(12)H(13)NO(3), contains two independent mol-ecules. The conformation of the N-H bond and the C=O bond in the amide segment are anti to each other. The mol-ecular conformation of each mol-ecule is stabilized by an intra-molecular O-H⋯O hydrogen bond. In the crystal, mol-ecules are connected through intermolecular N-H⋯O hydrogen bonds. In addition, there is a carbon-yl-carbonyl dipolar inter-action with an O⋯C contact of 2.926 (3) Å.Entities:
Year: 2009 PMID: 21578399 PMCID: PMC2971056 DOI: 10.1107/S1600536809042470
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13NO3 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 20238 reflections |
| θ = 2.1–29.4° | |
| µ = 0.09 mm−1 | |
| Prism, colourless | |
| 0.56 × 0.54 × 0.48 mm |
| Oxford Diffraction Xcalibur Ruby Gemini diffractometer | 2533 independent reflections |
| graphite | 2201 reflections with |
| Detector resolution: 10.434 pixels mm-1 | |
| ω scans | θmax = 25.6°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 38472 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2533 reflections | (Δ/σ)max < 0.001 |
| 305 parameters | Δρmax = 0.14 e Å−3 |
| 2 restraints | Δρmin = −0.12 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.25341 (16) | 0.39170 (14) | 0.10573 (14) | 0.0489 (5) | |
| C2 | 0.34832 (18) | 0.37146 (16) | 0.15245 (15) | 0.0570 (5) | |
| C3 | 0.44161 (19) | 0.3689 (2) | 0.10282 (19) | 0.0703 (7) | |
| H3 | 0.5057 | 0.3534 | 0.1317 | 0.084* | |
| C4 | 0.4408 (2) | 0.3891 (2) | 0.0114 (2) | 0.0824 (8) | |
| H4 | 0.5045 | 0.3875 | −0.0211 | 0.099* | |
| C5 | 0.3477 (2) | 0.4115 (2) | −0.03281 (17) | 0.0767 (7) | |
| H5 | 0.3494 | 0.4271 | −0.0946 | 0.092* | |
| C6 | 0.2509 (2) | 0.41152 (16) | 0.01250 (16) | 0.0617 (6) | |
| C7 | 0.10578 (16) | 0.47012 (14) | 0.18861 (14) | 0.0486 (5) | |
| C8 | 0.00863 (15) | 0.44838 (14) | 0.24183 (14) | 0.0475 (4) | |
| H8 | −0.0079 | 0.3787 | 0.2493 | 0.057* | |
| C9 | −0.05843 (15) | 0.51409 (14) | 0.28054 (14) | 0.0469 (5) | |
| H9 | −0.1152 | 0.4829 | 0.3107 | 0.056* | |
| C10 | −0.05898 (16) | 0.62944 (15) | 0.28426 (14) | 0.0483 (5) | |
| C11 | 0.3486 (3) | 0.3555 (2) | 0.25411 (18) | 0.0814 (7) | |
| H11A | 0.4185 | 0.3342 | 0.2734 | 0.122* | |
| H11B | 0.2976 | 0.303 | 0.2698 | 0.122* | |
| H11C | 0.3299 | 0.4191 | 0.2839 | 0.122* | |
| C12 | 0.1475 (3) | 0.4315 (3) | −0.0362 (2) | 0.0929 (9) | |
| H12A | 0.1169 | 0.495 | −0.0146 | 0.139* | |
| H12B | 0.0989 | 0.3755 | −0.0246 | 0.139* | |
| H12C | 0.1605 | 0.4365 | −0.1005 | 0.139* | |
| N1 | 0.15528 (13) | 0.38779 (12) | 0.15561 (12) | 0.0514 (4) | |
| H1N | 0.1307 (18) | 0.3268 (17) | 0.1688 (16) | 0.062* | |
| O1 | 0.14060 (13) | 0.55904 (11) | 0.17420 (12) | 0.0726 (5) | |
| O2 | 0.01844 (12) | 0.68259 (10) | 0.24839 (12) | 0.0591 (4) | |
| H2A | 0.067 (2) | 0.640 (2) | 0.2168 (18) | 0.071* | |
| O3 | −0.13208 (14) | 0.67180 (12) | 0.32315 (12) | 0.0728 (5) | |
| C21 | 0.69266 (14) | 0.49032 (15) | 0.15611 (12) | 0.0432 (4) | |
| C22 | 0.64858 (15) | 0.48672 (16) | 0.24349 (13) | 0.0500 (5) | |
| C23 | 0.65844 (19) | 0.39448 (19) | 0.29159 (15) | 0.0641 (6) | |
| H23 | 0.6292 | 0.3896 | 0.3496 | 0.077* | |
| C24 | 0.7103 (2) | 0.3108 (2) | 0.25536 (18) | 0.0734 (7) | |
| H24 | 0.7175 | 0.2504 | 0.2893 | 0.088* | |
| C25 | 0.7512 (2) | 0.31594 (19) | 0.16950 (16) | 0.0676 (6) | |
| H25 | 0.7851 | 0.2581 | 0.1453 | 0.081* | |
| C26 | 0.74363 (16) | 0.40489 (16) | 0.11727 (14) | 0.0517 (5) | |
| C27 | 0.76542 (15) | 0.64136 (16) | 0.07866 (12) | 0.0452 (4) | |
| C28 | 0.73911 (15) | 0.73479 (15) | 0.02517 (12) | 0.0455 (4) | |
| H28 | 0.6669 | 0.7505 | 0.0205 | 0.055* | |
| C29 | 0.80542 (15) | 0.79940 (14) | −0.01721 (13) | 0.0459 (4) | |
| H29 | 0.7718 | 0.8548 | −0.0457 | 0.055* | |
| C30 | 0.92344 (16) | 0.79890 (17) | −0.02710 (16) | 0.0556 (5) | |
| C31 | 0.5931 (2) | 0.5778 (2) | 0.28480 (16) | 0.0700 (6) | |
| H31A | 0.5664 | 0.5593 | 0.3439 | 0.105* | |
| H31B | 0.5347 | 0.5982 | 0.2465 | 0.105* | |
| H31C | 0.6425 | 0.6342 | 0.2906 | 0.105* | |
| C32 | 0.7872 (2) | 0.4054 (2) | 0.02141 (17) | 0.0750 (7) | |
| H32A | 0.8546 | 0.4408 | 0.0205 | 0.112* | |
| H32B | 0.7379 | 0.4403 | −0.0181 | 0.112* | |
| H32C | 0.7969 | 0.3355 | 0.0009 | 0.112* | |
| N2 | 0.68287 (12) | 0.58427 (13) | 0.10535 (11) | 0.0455 (4) | |
| H2N | 0.6232 (16) | 0.6091 (17) | 0.0914 (15) | 0.055* | |
| O4 | 0.85813 (11) | 0.61612 (13) | 0.09830 (11) | 0.0665 (4) | |
| O5 | 0.96486 (13) | 0.85754 (14) | −0.08053 (13) | 0.0768 (5) | |
| O6 | 0.98128 (12) | 0.73556 (19) | 0.02073 (15) | 0.0970 (8) | |
| H6A | 0.944 (3) | 0.685 (3) | 0.057 (3) | 0.116* |
| C1 | 0.0508 (11) | 0.0374 (9) | 0.0585 (11) | −0.0027 (9) | 0.0129 (10) | −0.0054 (9) |
| C2 | 0.0592 (12) | 0.0494 (12) | 0.0623 (12) | −0.0093 (10) | 0.0059 (11) | −0.0118 (10) |
| C3 | 0.0507 (12) | 0.0769 (16) | 0.0835 (17) | −0.0117 (12) | 0.0087 (12) | −0.0201 (14) |
| C4 | 0.0672 (16) | 0.0939 (19) | 0.0861 (19) | −0.0245 (15) | 0.0330 (15) | −0.0243 (16) |
| C5 | 0.0903 (19) | 0.0815 (17) | 0.0581 (13) | −0.0216 (15) | 0.0227 (14) | −0.0082 (12) |
| C6 | 0.0706 (14) | 0.0523 (12) | 0.0622 (13) | −0.0056 (11) | 0.0079 (12) | −0.0023 (10) |
| C7 | 0.0476 (11) | 0.0342 (10) | 0.0641 (12) | −0.0011 (9) | 0.0063 (9) | 0.0024 (9) |
| C8 | 0.0450 (10) | 0.0319 (9) | 0.0654 (11) | −0.0024 (8) | 0.0027 (9) | 0.0004 (9) |
| C9 | 0.0408 (10) | 0.0411 (10) | 0.0587 (11) | −0.0007 (8) | 0.0003 (9) | 0.0018 (9) |
| C10 | 0.0509 (11) | 0.0404 (10) | 0.0536 (11) | 0.0064 (10) | −0.0065 (10) | −0.0059 (9) |
| C11 | 0.0836 (17) | 0.0905 (18) | 0.0702 (15) | 0.0041 (15) | −0.0008 (14) | −0.0064 (14) |
| C12 | 0.096 (2) | 0.107 (2) | 0.0757 (17) | 0.0050 (18) | −0.0048 (17) | 0.0136 (16) |
| N1 | 0.0520 (9) | 0.0336 (8) | 0.0688 (10) | −0.0028 (7) | 0.0148 (8) | 0.0015 (8) |
| O1 | 0.0681 (10) | 0.0378 (7) | 0.1120 (13) | −0.0057 (7) | 0.0323 (10) | 0.0003 (8) |
| O2 | 0.0579 (9) | 0.0351 (7) | 0.0843 (10) | −0.0007 (7) | 0.0032 (8) | −0.0074 (7) |
| O3 | 0.0757 (11) | 0.0502 (8) | 0.0924 (12) | 0.0134 (8) | 0.0203 (10) | −0.0100 (8) |
| C21 | 0.0318 (8) | 0.0537 (11) | 0.0440 (9) | −0.0060 (8) | −0.0052 (8) | 0.0082 (8) |
| C22 | 0.0418 (10) | 0.0618 (12) | 0.0464 (10) | −0.0055 (9) | −0.0012 (9) | 0.0078 (9) |
| C23 | 0.0655 (14) | 0.0739 (14) | 0.0528 (11) | −0.0056 (13) | −0.0001 (11) | 0.0197 (11) |
| C24 | 0.0832 (17) | 0.0629 (14) | 0.0742 (15) | 0.0040 (13) | −0.0054 (14) | 0.0225 (13) |
| C25 | 0.0729 (14) | 0.0562 (12) | 0.0738 (14) | 0.0096 (12) | −0.0027 (14) | 0.0035 (11) |
| C26 | 0.0468 (10) | 0.0558 (11) | 0.0525 (10) | −0.0011 (10) | −0.0035 (9) | 0.0008 (9) |
| C27 | 0.0366 (10) | 0.0582 (11) | 0.0407 (9) | −0.0030 (9) | −0.0040 (8) | 0.0062 (8) |
| C28 | 0.0344 (9) | 0.0538 (11) | 0.0484 (10) | 0.0008 (9) | 0.0007 (9) | 0.0040 (9) |
| C29 | 0.0424 (9) | 0.0460 (10) | 0.0494 (10) | −0.0002 (8) | 0.0023 (9) | 0.0035 (9) |
| C30 | 0.0449 (11) | 0.0578 (12) | 0.0643 (12) | −0.0118 (10) | 0.0003 (10) | 0.0091 (11) |
| C31 | 0.0711 (14) | 0.0823 (16) | 0.0565 (12) | 0.0068 (13) | 0.0147 (11) | 0.0056 (12) |
| C32 | 0.0820 (17) | 0.0803 (16) | 0.0626 (13) | 0.0058 (14) | 0.0126 (13) | −0.0049 (13) |
| N2 | 0.0311 (7) | 0.0567 (10) | 0.0486 (8) | 0.0000 (7) | 0.0006 (7) | 0.0115 (8) |
| O4 | 0.0365 (7) | 0.0845 (11) | 0.0784 (10) | −0.0085 (8) | −0.0110 (7) | 0.0377 (9) |
| O5 | 0.0529 (9) | 0.0795 (11) | 0.0979 (13) | −0.0113 (8) | 0.0134 (8) | 0.0336 (10) |
| O6 | 0.0379 (8) | 0.1251 (17) | 0.1281 (16) | −0.0123 (10) | −0.0069 (9) | 0.0741 (15) |
| C1—C6 | 1.393 (3) | C21—C26 | 1.397 (3) |
| C1—C2 | 1.397 (3) | C21—C22 | 1.398 (3) |
| C1—N1 | 1.432 (3) | C21—N2 | 1.430 (2) |
| C2—C3 | 1.378 (3) | C22—C23 | 1.391 (3) |
| C2—C11 | 1.507 (4) | C22—C31 | 1.495 (3) |
| C3—C4 | 1.368 (4) | C23—C24 | 1.369 (4) |
| C3—H3 | 0.93 | C23—H23 | 0.93 |
| C4—C5 | 1.365 (4) | C24—C25 | 1.362 (4) |
| C4—H4 | 0.93 | C24—H24 | 0.93 |
| C5—C6 | 1.383 (4) | C25—C26 | 1.385 (3) |
| C5—H5 | 0.93 | C25—H25 | 0.93 |
| C6—C12 | 1.502 (4) | C26—C32 | 1.510 (3) |
| C7—O1 | 1.247 (2) | C27—O4 | 1.240 (2) |
| C7—N1 | 1.323 (3) | C27—N2 | 1.329 (2) |
| C7—C8 | 1.473 (3) | C27—C28 | 1.478 (3) |
| C8—C9 | 1.323 (3) | C28—C29 | 1.332 (3) |
| C8—H8 | 0.93 | C28—H28 | 0.93 |
| C9—C10 | 1.492 (3) | C29—C30 | 1.486 (3) |
| C9—H9 | 0.93 | C29—H29 | 0.93 |
| C10—O3 | 1.210 (2) | C30—O5 | 1.208 (2) |
| C10—O2 | 1.300 (3) | C30—O6 | 1.299 (3) |
| C11—H11A | 0.96 | C31—H31A | 0.96 |
| C11—H11B | 0.96 | C31—H31B | 0.96 |
| C11—H11C | 0.96 | C31—H31C | 0.96 |
| C12—H12A | 0.96 | C32—H32A | 0.96 |
| C12—H12B | 0.96 | C32—H32B | 0.96 |
| C12—H12C | 0.96 | C32—H32C | 0.96 |
| N1—H1N | 0.87 (2) | N2—H2N | 0.839 (19) |
| O2—H2A | 0.94 (3) | O6—H6A | 0.96 (4) |
| C6—C1—C2 | 122.42 (19) | C26—C21—C22 | 121.93 (17) |
| C6—C1—N1 | 119.32 (19) | C26—C21—N2 | 119.83 (16) |
| C2—C1—N1 | 118.21 (18) | C22—C21—N2 | 118.22 (18) |
| C3—C2—C1 | 117.8 (2) | C23—C22—C21 | 117.4 (2) |
| C3—C2—C11 | 121.3 (2) | C23—C22—C31 | 120.63 (18) |
| C1—C2—C11 | 120.9 (2) | C21—C22—C31 | 122.01 (18) |
| C4—C3—C2 | 120.5 (3) | C24—C23—C22 | 121.5 (2) |
| C4—C3—H3 | 119.7 | C24—C23—H23 | 119.3 |
| C2—C3—H3 | 119.7 | C22—C23—H23 | 119.3 |
| C5—C4—C3 | 120.9 (2) | C25—C24—C23 | 119.9 (2) |
| C5—C4—H4 | 119.5 | C25—C24—H24 | 120 |
| C3—C4—H4 | 119.5 | C23—C24—H24 | 120 |
| C4—C5—C6 | 121.3 (2) | C24—C25—C26 | 121.8 (2) |
| C4—C5—H5 | 119.3 | C24—C25—H25 | 119.1 |
| C6—C5—H5 | 119.3 | C26—C25—H25 | 119.1 |
| C5—C6—C1 | 116.9 (2) | C25—C26—C21 | 117.45 (19) |
| C5—C6—C12 | 121.8 (2) | C25—C26—C32 | 119.7 (2) |
| C1—C6—C12 | 121.3 (2) | C21—C26—C32 | 122.85 (19) |
| O1—C7—N1 | 120.98 (18) | O4—C27—N2 | 120.93 (17) |
| O1—C7—C8 | 123.68 (17) | O4—C27—C28 | 123.18 (17) |
| N1—C7—C8 | 115.34 (16) | N2—C27—C28 | 115.89 (16) |
| C9—C8—C7 | 129.05 (17) | C29—C28—C27 | 128.42 (18) |
| C9—C8—H8 | 115.5 | C29—C28—H28 | 115.8 |
| C7—C8—H8 | 115.5 | C27—C28—H28 | 115.8 |
| C8—C9—C10 | 131.31 (19) | C28—C29—C30 | 131.57 (18) |
| C8—C9—H9 | 114.3 | C28—C29—H29 | 114.2 |
| C10—C9—H9 | 114.3 | C30—C29—H29 | 114.2 |
| O3—C10—O2 | 121.11 (18) | O5—C30—O6 | 120.45 (19) |
| O3—C10—C9 | 118.2 (2) | O5—C30—C29 | 119.2 (2) |
| O2—C10—C9 | 120.65 (18) | O6—C30—C29 | 120.32 (19) |
| C2—C11—H11A | 109.5 | C22—C31—H31A | 109.5 |
| C2—C11—H11B | 109.5 | C22—C31—H31B | 109.5 |
| H11A—C11—H11B | 109.5 | H31A—C31—H31B | 109.5 |
| C2—C11—H11C | 109.5 | C22—C31—H31C | 109.5 |
| H11A—C11—H11C | 109.5 | H31A—C31—H31C | 109.5 |
| H11B—C11—H11C | 109.5 | H31B—C31—H31C | 109.5 |
| C6—C12—H12A | 109.5 | C26—C32—H32A | 109.5 |
| C6—C12—H12B | 109.5 | C26—C32—H32B | 109.5 |
| H12A—C12—H12B | 109.5 | H32A—C32—H32B | 109.5 |
| C6—C12—H12C | 109.5 | C26—C32—H32C | 109.5 |
| H12A—C12—H12C | 109.5 | H32A—C32—H32C | 109.5 |
| H12B—C12—H12C | 109.5 | H32B—C32—H32C | 109.5 |
| C7—N1—C1 | 124.14 (16) | C27—N2—C21 | 123.92 (16) |
| C7—N1—H1N | 118.8 (16) | C27—N2—H2N | 114.2 (16) |
| C1—N1—H1N | 116.8 (15) | C21—N2—H2N | 121.9 (16) |
| C10—O2—H2A | 111.5 (15) | C30—O6—H6A | 117 (2) |
| C6—C1—C2—C3 | −1.6 (3) | C26—C21—C22—C23 | 0.8 (3) |
| N1—C1—C2—C3 | 175.98 (19) | N2—C21—C22—C23 | 179.67 (18) |
| C6—C1—C2—C11 | 177.0 (2) | C26—C21—C22—C31 | −179.38 (19) |
| N1—C1—C2—C11 | −5.4 (3) | N2—C21—C22—C31 | −0.5 (3) |
| C1—C2—C3—C4 | 2.1 (3) | C21—C22—C23—C24 | 0.7 (3) |
| C11—C2—C3—C4 | −176.5 (3) | C31—C22—C23—C24 | −179.1 (2) |
| C2—C3—C4—C5 | −0.4 (4) | C22—C23—C24—C25 | −1.7 (4) |
| C3—C4—C5—C6 | −2.0 (4) | C23—C24—C25—C26 | 1.1 (4) |
| C4—C5—C6—C1 | 2.5 (4) | C24—C25—C26—C21 | 0.3 (4) |
| C4—C5—C6—C12 | −177.3 (3) | C24—C25—C26—C32 | −178.1 (2) |
| C2—C1—C6—C5 | −0.7 (3) | C22—C21—C26—C25 | −1.3 (3) |
| N1—C1—C6—C5 | −178.2 (2) | N2—C21—C26—C25 | 179.84 (18) |
| C2—C1—C6—C12 | 179.1 (2) | C22—C21—C26—C32 | 177.0 (2) |
| N1—C1—C6—C12 | 1.5 (3) | N2—C21—C26—C32 | −1.8 (3) |
| O1—C7—C8—C9 | 1.8 (4) | O4—C27—C28—C29 | 7.2 (3) |
| N1—C7—C8—C9 | −177.9 (2) | N2—C27—C28—C29 | −172.82 (19) |
| C7—C8—C9—C10 | −0.4 (4) | C27—C28—C29—C30 | 1.7 (4) |
| C8—C9—C10—O3 | 178.4 (2) | C28—C29—C30—O5 | 168.9 (2) |
| C8—C9—C10—O2 | −3.2 (3) | C28—C29—C30—O6 | −10.7 (4) |
| O1—C7—N1—C1 | 3.2 (3) | O4—C27—N2—C21 | −1.2 (3) |
| C8—C7—N1—C1 | −177.03 (18) | C28—C27—N2—C21 | 178.79 (17) |
| C6—C1—N1—C7 | −84.2 (3) | C26—C21—N2—C27 | −64.1 (3) |
| C2—C1—N1—C7 | 98.2 (2) | C22—C21—N2—C27 | 117.1 (2) |
| H··· | ||||
| N1—H1N···O3i | 0.87 (2) | 2.01 (2) | 2.824 (2) | 156 (2) |
| N2—H2N···O5ii | 0.84 (2) | 2.04 (2) | 2.856 (2) | 166 (2) |
| O2—H2A···O1 | 0.94 (3) | 1.53 (3) | 2.465 (2) | 173 (2) |
| O6—H6A···O4 | 0.96 (4) | 1.52 (4) | 2.462 (2) | 163 (4) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.87 (2) | 2.01 (2) | 2.824 (2) | 156 (2) |
| N2—H2 | 0.839 (19) | 2.04 (2) | 2.856 (2) | 166 (2) |
| O2—H2 | 0.94 (3) | 1.53 (3) | 2.465 (2) | 173 (2) |
| O6—H6 | 0.96 (4) | 1.52 (4) | 2.462 (2) | 163 (4) |
Symmetry codes: (i) ; (ii) .