Literature DB >> 21522734

N-(3,5-Dimethyl-phen-yl)succinamic acid.

B S Saraswathi, Sabine Foro, B Thimme Gowda.   

Abstract

In the title compound, C(12)H(15)NO(3), the N-H and C=O bonds are anti to each other. The C=O and O-H bonds of the acid group display an anti-periplanar orientation relative to each other. The crystal packing features a three-dimensional network of molecules held together by O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21522734      PMCID: PMC3050227          DOI: 10.1107/S1600536810053055

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our study of the effect of ring and side-chain substitutions on the crystal structures of anilides, see: Gowda et al. (2009 ▶ 2010a ▶,b ▶). For modes of inter­linking carb­oxy­lic acids by hydrogen bonds, see: Leiserowitz (1976 ▶). The packing of mol­ecules involving dimeric hydrogen-bonded association of each carboxyl group with a centrosymmetrically related neighbor has also been observed, see: Jagannathan et al. (1994 ▶).

Experimental

Crystal data

C12H15NO3 M = 221.25 Monoclinic, a = 14.346 (2) Å b = 5.0225 (9) Å c = 17.860 (3) Å β = 112.00 (2)° V = 1193.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.45 × 0.08 × 0.05 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.961, T max = 0.996 4452 measured reflections 2419 independent reflections 1593 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.147 S = 1.03 2419 reflections 153 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053055/bt5440sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053055/bt5440Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15NO3F(000) = 472
Mr = 221.25Dx = 1.232 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1372 reflections
a = 14.346 (2) Åθ = 2.9–27.7°
b = 5.0225 (9) ŵ = 0.09 mm1
c = 17.860 (3) ÅT = 293 K
β = 112.00 (2)°Needle, colourless
V = 1193.2 (3) Å30.45 × 0.08 × 0.05 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector2419 independent reflections
Radiation source: fine-focus sealed tube1593 reflections with I > 2σ(I)
graphiteRint = 0.019
Rotation method data acquisition using ω scansθmax = 26.4°, θmin = 3.1°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)h = −17→17
Tmin = 0.961, Tmax = 0.996k = −6→4
4452 measured reflectionsl = −22→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0672P)2 + 0.3965P] where P = (Fo2 + 2Fc2)/3
2419 reflections(Δ/σ)max = 0.018
153 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.18 e Å3
Experimental. CrysAlis RED (Oxford Diffraction, 2009) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.59923 (15)−0.1845 (4)0.36154 (12)0.0429 (5)
C20.56185 (17)−0.3031 (5)0.28576 (13)0.0490 (6)
H20.5005−0.24830.24760.059*
C30.61608 (19)−0.5031 (5)0.26700 (15)0.0555 (6)
C40.70735 (19)−0.5819 (5)0.32444 (17)0.0627 (7)
H40.7437−0.71570.31170.075*
C50.74574 (18)−0.4675 (5)0.40004 (16)0.0583 (7)
C60.69101 (16)−0.2678 (5)0.41832 (14)0.0506 (6)
H60.7159−0.18870.46910.061*
C70.45744 (14)0.1217 (4)0.34799 (11)0.0390 (5)
C80.42783 (15)0.3396 (4)0.39303 (12)0.0419 (5)
H8A0.43140.27060.44480.050*
H8B0.47590.48410.40350.050*
C90.32429 (15)0.4476 (4)0.34847 (12)0.0477 (6)
H9A0.31900.50390.29510.057*
H9B0.27570.30630.34180.057*
C100.29831 (15)0.6774 (4)0.39033 (11)0.0417 (5)
C110.5745 (2)−0.6330 (6)0.18462 (17)0.0773 (9)
H11A0.5206−0.52670.14890.093*
H11B0.5499−0.80740.18930.093*
H11C0.6268−0.64710.16350.093*
C120.8446 (2)−0.5577 (7)0.46246 (19)0.0861 (10)
H12A0.8325−0.69060.49640.103*
H12B0.8784−0.40840.49480.103*
H12C0.8858−0.63160.43590.103*
N10.54859 (13)0.0184 (4)0.38637 (10)0.0446 (5)
H1N0.5825 (17)0.090 (5)0.4335 (14)0.054*
O10.40041 (11)0.0430 (3)0.28096 (9)0.0557 (5)
O20.35474 (12)0.7710 (3)0.45287 (9)0.0593 (5)
O30.20787 (12)0.7838 (3)0.35458 (9)0.0563 (5)
H3O0.1771 (19)0.695 (5)0.3110 (16)0.068*
U11U22U33U12U13U23
C10.0391 (11)0.0465 (13)0.0432 (11)0.0005 (10)0.0154 (9)0.0049 (10)
C20.0464 (12)0.0548 (14)0.0461 (12)−0.0005 (11)0.0178 (10)−0.0002 (11)
C30.0628 (15)0.0543 (14)0.0601 (14)−0.0069 (12)0.0352 (13)−0.0027 (12)
C40.0632 (16)0.0578 (15)0.0810 (19)0.0093 (13)0.0429 (15)0.0059 (14)
C50.0473 (13)0.0631 (16)0.0691 (16)0.0074 (12)0.0271 (12)0.0175 (13)
C60.0446 (12)0.0580 (14)0.0477 (12)0.0015 (11)0.0158 (10)0.0075 (11)
C70.0361 (10)0.0416 (12)0.0323 (10)−0.0043 (9)0.0050 (8)0.0001 (9)
C80.0390 (11)0.0449 (12)0.0345 (10)−0.0036 (9)0.0053 (8)−0.0026 (9)
C90.0436 (12)0.0479 (13)0.0375 (11)0.0041 (10)−0.0010 (9)−0.0059 (10)
C100.0398 (11)0.0479 (12)0.0307 (10)0.0008 (10)0.0055 (8)0.0020 (9)
C110.090 (2)0.0774 (19)0.0780 (19)−0.0079 (16)0.0473 (17)−0.0227 (16)
C120.0632 (17)0.105 (2)0.090 (2)0.0334 (17)0.0282 (16)0.0258 (19)
N10.0390 (10)0.0513 (11)0.0343 (9)0.0019 (8)0.0032 (8)−0.0051 (8)
O10.0458 (9)0.0639 (11)0.0397 (8)0.0063 (8)−0.0042 (7)−0.0135 (7)
O20.0572 (10)0.0654 (11)0.0380 (8)0.0020 (8)−0.0021 (7)−0.0156 (8)
O30.0492 (9)0.0673 (11)0.0414 (8)0.0137 (8)0.0043 (7)−0.0070 (8)
C1—C21.389 (3)C8—H8A0.9700
C1—C61.392 (3)C8—H8B0.9700
C1—N11.416 (3)C9—C101.496 (3)
C2—C31.386 (3)C9—H9A0.9700
C2—H20.9300C9—H9B0.9700
C3—C41.385 (3)C10—O21.203 (2)
C3—C111.513 (3)C10—O31.325 (2)
C4—C51.378 (4)C11—H11A0.9600
C4—H40.9300C11—H11B0.9600
C5—C61.386 (3)C11—H11C0.9600
C5—C121.508 (4)C12—H12A0.9600
C6—H60.9300C12—H12B0.9600
C7—O11.235 (2)C12—H12C0.9600
C7—N11.333 (3)N1—H1N0.88 (2)
C7—C81.510 (3)O3—H3O0.86 (3)
C8—C91.499 (3)
C2—C1—C6119.7 (2)H8A—C8—H8B107.7
C2—C1—N1123.88 (19)C10—C9—C8113.35 (17)
C6—C1—N1116.40 (19)C10—C9—H9A108.9
C3—C2—C1120.0 (2)C8—C9—H9A108.9
C3—C2—H2120.0C10—C9—H9B108.9
C1—C2—H2120.0C8—C9—H9B108.9
C4—C3—C2119.2 (2)H9A—C9—H9B107.7
C4—C3—C11121.1 (2)O2—C10—O3119.1 (2)
C2—C3—C11119.7 (2)O2—C10—C9123.95 (19)
C5—C4—C3121.8 (2)O3—C10—C9116.91 (17)
C5—C4—H4119.1C3—C11—H11A109.5
C3—C4—H4119.1C3—C11—H11B109.5
C4—C5—C6118.6 (2)H11A—C11—H11B109.5
C4—C5—C12121.3 (2)C3—C11—H11C109.5
C6—C5—C12120.1 (3)H11A—C11—H11C109.5
C5—C6—C1120.7 (2)H11B—C11—H11C109.5
C5—C6—H6119.6C5—C12—H12A109.5
C1—C6—H6119.6C5—C12—H12B109.5
O1—C7—N1122.7 (2)H12A—C12—H12B109.5
O1—C7—C8122.14 (18)C5—C12—H12C109.5
N1—C7—C8115.19 (17)H12A—C12—H12C109.5
C9—C8—C7113.56 (16)H12B—C12—H12C109.5
C9—C8—H8A108.9C7—N1—C1129.70 (18)
C7—C8—H8A108.9C7—N1—H1N114.7 (15)
C9—C8—H8B108.9C1—N1—H1N115.6 (15)
C7—C8—H8B108.9C10—O3—H3O107.7 (17)
C6—C1—C2—C3−0.1 (3)N1—C1—C6—C5179.3 (2)
N1—C1—C2—C3−179.2 (2)O1—C7—C8—C9−0.1 (3)
C1—C2—C3—C4−0.1 (3)N1—C7—C8—C9−179.09 (19)
C1—C2—C3—C11179.5 (2)C7—C8—C9—C10−175.54 (18)
C2—C3—C4—C50.2 (4)C8—C9—C10—O21.1 (3)
C11—C3—C4—C5−179.3 (2)C8—C9—C10—O3180.00 (19)
C3—C4—C5—C6−0.2 (4)O1—C7—N1—C11.5 (4)
C3—C4—C5—C12179.2 (2)C8—C7—N1—C1−179.56 (19)
C4—C5—C6—C10.0 (4)C2—C1—N1—C74.9 (4)
C12—C5—C6—C1−179.4 (2)C6—C1—N1—C7−174.2 (2)
C2—C1—C6—C50.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.88 (2)2.01 (2)2.881 (2)171 (2)
O3—H3O···O1ii0.86 (3)1.77 (3)2.630 (2)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.88 (2)2.01 (2)2.881 (2)171 (2)
O3—H3O⋯O1ii0.86 (3)1.77 (3)2.630 (2)172 (3)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(3-Methyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-16

3.  N-(2,6-Dimethyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hiromitsu Terao; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-06

4.  N-(3,4-Dimethyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-23

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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