Literature DB >> 21583718

N-(2,4,6-Trimethyl-phen-yl)succinamic acid.

B Thimme Gowda, Sabine Foro, B S Saraswathi, Hartmut Fuess.   

Abstract

The amide bond in the title compound {systematic name: 3-[(2,4,6-trimethyl-phen-yl)amino-carbon-yl]propionic acid}, C(13)H(17)NO(3), has a trans conformation. In the crystal, two mol-ecules form a centrosymmetric dimer connected by pairs of O-H⋯O hydrogen bonds. Inter-molecular N-H⋯O hydrogen bonds link the dimers into a three dimensional network.

Entities:  

Year:  2009        PMID: 21583718      PMCID: PMC2977192          DOI: 10.1107/S1600536809029791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gowda et al. (2009 ▶); Jagannathan et al. (1994 ▶). For the modes of inter­linking carboxylic acids by hydrogen bonds, see: Leiserowitz (1976 ▶).

Experimental

Crystal data

C13H17NO3 M = 235.28 Triclinic, a = 4.7646 (4) Å b = 10.859 (1) Å c = 13.111 (2) Å α = 70.217 (8)° β = 86.158 (8)° γ = 79.351 (8)° V = 627.31 (12) Å3 Z = 2 Cu Kα radiation μ = 0.72 mm−1 T = 299 K 0.55 × 0.25 × 0.08 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.692, T max = 0.945 3109 measured reflections 2234 independent reflections 1918 reflections with I > 2σ(I) R int = 0.014 3 standard reflections frequency: 120 min intensity decay: 1.0%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.145 S = 1.05 2234 reflections 182 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CAD-4-PC (Enraf–Nonius, 1996 ▶); cell refinement: CAD-4-PC; data reduction: REDU4 (Stoe & Cie, 1987 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809029791/bt5016sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029791/bt5016Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H17NO3Z = 2
Mr = 235.28F(000) = 252
Triclinic, P1Dx = 1.246 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54180 Å
a = 4.7646 (4) ÅCell parameters from 25 reflections
b = 10.859 (1) Åθ = 4.4–22.9°
c = 13.111 (2) ŵ = 0.72 mm1
α = 70.217 (8)°T = 299 K
β = 86.158 (8)°Plate, colourless
γ = 79.351 (8)°0.55 × 0.25 × 0.08 mm
V = 627.31 (12) Å3
Enraf–Nonius CAD-4 diffractometer1918 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.014
graphiteθmax = 67.0°, θmin = 3.6°
ω/2θ scansh = −5→2
Absorption correction: ψ scan (North et al., 1968)k = −12→12
Tmin = 0.692, Tmax = 0.945l = −15→15
3109 measured reflections3 standard reflections every 120 min
2234 independent reflections intensity decay: 1.0%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.145w = 1/[σ2(Fo2) + (0.0856P)2 + 0.1672P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.004
2234 reflectionsΔρmax = 0.30 e Å3
182 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.016 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3669 (3)0.77823 (17)0.30593 (13)0.0376 (4)
C20.5805 (4)0.67491 (18)0.36121 (15)0.0452 (4)
C30.6582 (5)0.6700 (2)0.46280 (16)0.0549 (5)
H30.804 (5)0.598 (2)0.5015 (19)0.066*
C40.5306 (4)0.7610 (2)0.51124 (15)0.0512 (5)
C50.3135 (4)0.8597 (2)0.45520 (15)0.0469 (5)
H50.225 (5)0.923 (2)0.4870 (18)0.056*
C60.2278 (3)0.87030 (18)0.35308 (14)0.0400 (4)
C70.4594 (3)0.81334 (16)0.11383 (13)0.0368 (4)
C80.3304 (4)0.8203 (2)0.00956 (15)0.0494 (5)
H8A0.214 (5)0.912 (2)−0.0210 (18)0.059*
H8B0.205 (5)0.749 (2)0.0314 (18)0.059*
C90.5540 (4)0.8015 (2)−0.07431 (16)0.0543 (5)
H9A0.683 (5)0.867 (2)−0.0887 (19)0.065*
H9B0.474 (5)0.815 (2)−0.142 (2)0.065*
C100.7408 (4)0.6682 (2)−0.04148 (15)0.0479 (5)
C110.7206 (5)0.5687 (2)0.31581 (18)0.0607 (6)
H11A0.88840.59460.27570.073*
H11B0.58980.55700.26860.073*
H11C0.77300.48680.37410.073*
C120.6208 (6)0.7531 (3)0.62154 (18)0.0727 (7)
H12A0.82030.71630.63160.087*
H12B0.51200.69750.67630.087*
H12C0.58750.84060.62700.087*
C13−0.0127 (4)0.9782 (2)0.29629 (16)0.0508 (5)
H13A−0.18960.94510.31220.061*
H13B0.02101.00570.21950.061*
H13C−0.02271.05270.32100.061*
N10.2852 (3)0.78867 (15)0.20030 (11)0.0396 (4)
H1N0.108 (5)0.790 (2)0.1887 (16)0.047*
O10.7050 (2)0.83144 (14)0.11738 (10)0.0497 (4)
O20.9467 (3)0.65764 (18)−0.11116 (13)0.0680 (5)
H2O1.049 (6)0.577 (3)−0.091 (2)0.082*
O30.7089 (3)0.57886 (15)0.04196 (13)0.0631 (4)
U11U22U33U12U13U23
C10.0274 (8)0.0490 (9)0.0385 (9)−0.0093 (7)0.0005 (6)−0.0158 (7)
C20.0415 (9)0.0474 (9)0.0448 (9)−0.0008 (8)−0.0037 (7)−0.0159 (8)
C30.0538 (12)0.0562 (11)0.0483 (11)0.0068 (9)−0.0139 (9)−0.0151 (9)
C40.0503 (11)0.0610 (11)0.0425 (10)−0.0052 (9)−0.0069 (8)−0.0188 (8)
C50.0424 (10)0.0570 (11)0.0450 (10)−0.0039 (8)0.0014 (8)−0.0244 (9)
C60.0280 (8)0.0502 (10)0.0417 (9)−0.0060 (7)0.0020 (6)−0.0159 (7)
C70.0226 (8)0.0466 (9)0.0426 (9)−0.0003 (6)−0.0025 (6)−0.0190 (7)
C80.0281 (9)0.0769 (13)0.0448 (10)0.0025 (9)−0.0051 (7)−0.0273 (9)
C90.0417 (10)0.0776 (14)0.0417 (10)0.0032 (9)−0.0022 (8)−0.0241 (9)
C100.0373 (9)0.0713 (12)0.0450 (10)−0.0081 (8)0.0019 (7)−0.0332 (10)
C110.0688 (14)0.0530 (11)0.0553 (12)0.0092 (10)−0.0086 (10)−0.0202 (9)
C120.0836 (17)0.0828 (16)0.0519 (12)0.0025 (13)−0.0207 (11)−0.0276 (11)
C130.0356 (10)0.0627 (12)0.0517 (10)0.0049 (8)−0.0025 (8)−0.0226 (9)
N10.0213 (7)0.0588 (9)0.0420 (8)−0.0074 (6)−0.0022 (6)−0.0206 (7)
O10.0221 (6)0.0789 (9)0.0516 (7)−0.0109 (6)−0.0004 (5)−0.0249 (7)
O20.0600 (10)0.0758 (10)0.0631 (9)0.0032 (8)0.0198 (7)−0.0280 (8)
O30.0569 (9)0.0678 (9)0.0624 (9)−0.0033 (7)0.0161 (7)−0.0256 (8)
C1—C61.393 (2)C8—H8B1.02 (2)
C1—C21.395 (2)C9—C101.491 (3)
C1—N11.426 (2)C9—H9A0.99 (3)
C2—C31.387 (3)C9—H9B0.94 (3)
C2—C111.502 (3)C10—O31.215 (2)
C3—C41.378 (3)C10—O21.311 (2)
C3—H30.96 (2)C11—H11A0.9600
C4—C51.385 (3)C11—H11B0.9600
C4—C121.507 (3)C11—H11C0.9600
C5—C61.387 (2)C12—H12A0.9600
C5—H50.94 (2)C12—H12B0.9600
C6—C131.506 (2)C12—H12C0.9600
C7—O11.228 (2)C13—H13A0.9600
C7—N11.341 (2)C13—H13B0.9600
C7—C81.509 (2)C13—H13C0.9600
C8—C91.517 (3)N1—H1N0.86 (2)
C8—H8A1.01 (2)O2—H2O0.88 (3)
C6—C1—C2121.06 (15)C8—C9—H9A110.4 (14)
C6—C1—N1119.24 (15)C10—C9—H9B107.1 (14)
C2—C1—N1119.69 (15)C8—C9—H9B112.8 (15)
C3—C2—C1117.88 (17)H9A—C9—H9B106 (2)
C3—C2—C11119.76 (17)O3—C10—O2123.15 (19)
C1—C2—C11122.34 (17)O3—C10—C9123.67 (17)
C4—C3—C2122.86 (18)O2—C10—C9113.17 (18)
C4—C3—H3119.0 (14)C2—C11—H11A109.5
C2—C3—H3118.1 (14)C2—C11—H11B109.5
C3—C4—C5117.53 (17)H11A—C11—H11B109.5
C3—C4—C12121.54 (19)C2—C11—H11C109.5
C5—C4—C12120.93 (19)H11A—C11—H11C109.5
C4—C5—C6122.27 (17)H11B—C11—H11C109.5
C4—C5—H5118.5 (14)C4—C12—H12A109.5
C6—C5—H5119.2 (14)C4—C12—H12B109.5
C5—C6—C1118.35 (16)H12A—C12—H12B109.5
C5—C6—C13120.18 (16)C4—C12—H12C109.5
C1—C6—C13121.46 (15)H12A—C12—H12C109.5
O1—C7—N1123.22 (15)H12B—C12—H12C109.5
O1—C7—C8121.66 (15)C6—C13—H13A109.5
N1—C7—C8115.11 (14)C6—C13—H13B109.5
C7—C8—C9112.74 (15)H13A—C13—H13B109.5
C7—C8—H8A106.9 (13)C6—C13—H13C109.5
C9—C8—H8A107.8 (13)H13A—C13—H13C109.5
C7—C8—H8B105.4 (13)H13B—C13—H13C109.5
C9—C8—H8B112.3 (13)C7—N1—C1123.64 (14)
H8A—C8—H8B111.7 (18)C7—N1—H1N117.1 (14)
C10—C9—C8114.18 (18)C1—N1—H1N118.7 (14)
C10—C9—H9A106.1 (14)C10—O2—H2O111.1 (18)
C6—C1—C2—C3−2.6 (3)N1—C1—C6—C5−179.01 (15)
N1—C1—C2—C3178.60 (16)C2—C1—C6—C13−177.02 (16)
C6—C1—C2—C11175.73 (18)N1—C1—C6—C131.8 (2)
N1—C1—C2—C11−3.1 (3)O1—C7—C8—C920.7 (3)
C1—C2—C3—C41.1 (3)N1—C7—C8—C9−160.51 (18)
C11—C2—C3—C4−177.3 (2)C7—C8—C9—C1063.5 (3)
C2—C3—C4—C50.9 (3)C8—C9—C10—O34.2 (3)
C2—C3—C4—C12−179.8 (2)C8—C9—C10—O2−174.88 (17)
C3—C4—C5—C6−1.3 (3)O1—C7—N1—C1−1.2 (3)
C12—C4—C5—C6179.3 (2)C8—C7—N1—C1179.97 (16)
C4—C5—C6—C1−0.2 (3)C6—C1—N1—C7116.28 (19)
C4—C5—C6—C13179.05 (18)C2—C1—N1—C7−64.9 (2)
C2—C1—C6—C52.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.86 (2)2.10 (2)2.9368 (18)163.6 (19)
O2—H2O···O3ii0.88 (3)1.80 (3)2.679 (2)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.86 (2)2.10 (2)2.9368 (18)163.6 (19)
O2—H2O⋯O3ii0.88 (3)1.80 (3)2.679 (2)172 (3)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-[(3,5-Dichloro-anilino)carbon-yl]propionic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hiromitsu Terao; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25

3.  N-(2,6-Dimethyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hiromitsu Terao; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-06

4.  N-(2-Chloro-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hiromitsu Terao; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-28

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  4 in total

1.  N-(2,6-Dimethyl-phen-yl)succinimide.

Authors:  B S Saraswathi; B Thimme Gowda; Sabine Foro; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

2.  N-(3,4-Dimethyl-phen-yl)maleamic acid.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Jozef Kožíšek; K Shakuntala; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

3.  N-(2,4,6-Trimethyl-phen-yl)maleamic acid.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Jozef Kožíšek; K Shakuntala; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

4.  N-(2,6-Dimethyl-phen-yl)maleamic acid.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Jozef Kožíšek; K Shakuntala; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-23
  4 in total

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