| Literature DB >> 22590390 |
V H Rodrigues, Mohammad Hakimi, Elham Motieiyan.
Abstract
In the title compound, 2C(5)H(7)N(2) (+)·C(10)H(4)O(8) (2-), the 2-amino-pyridinium (2-apyH) cation and 2,5-dicarb-oxy-benzene-1,4-dicarboxyl-ate (btcH2) anion are both nearly planar, with r.m.s. deviations of 0.015 and 0.050 Å, respectively. The angle between the latter least-squares planes is 17.68 (9)°. The overall crystal structure results from the packing of two-dimensional networks, formed by alternating 2-apyH and btcH2 linked by hydrogen bonds, parallel to (100).Entities:
Year: 2012 PMID: 22590390 PMCID: PMC3344628 DOI: 10.1107/S1600536812017254
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C5H7N2+·C10H4O82− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 7209 reflections |
| θ = 2.7–24.9° | |
| µ = 0.13 mm−1 | |
| β = 99.535 (2)° | Block, yellow |
| 0.3 × 0.2 × 0.15 mm | |
| Bruker–Nonius APEXII CCD area-detector diffractometer | 2209 independent reflections |
| Radiation source: fine-focus sealed tube | 1652 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.2°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 18838 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2209 reflections | Δρmax = 0.20 e Å−3 |
| 158 parameters | Δρmin = −0.15 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.014 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 1.1547 (3) | 0.04940 (11) | 0.38178 (5) | 0.0424 (3) | |
| H1A | 1.040 (4) | 0.1095 (15) | 0.3993 (8) | 0.051* | |
| C1 | 1.1679 (3) | 0.04905 (12) | 0.32019 (6) | 0.0370 (3) | |
| N2 | 1.0229 (4) | 0.14007 (12) | 0.28496 (6) | 0.0511 (3) | |
| H2A | 1.021 (4) | 0.1363 (16) | 0.2461 (9) | 0.061* | |
| H2B | 0.916 (5) | 0.1990 (16) | 0.3019 (9) | 0.061* | |
| C3 | 1.3390 (4) | −0.04878 (13) | 0.29700 (7) | 0.0469 (4) | |
| H3 | 1.3508 | −0.0532 | 0.2540 | 0.056* | |
| C4 | 1.4882 (4) | −0.13741 (15) | 0.33704 (9) | 0.0569 (4) | |
| H4 | 1.6042 | −0.2019 | 0.3215 | 0.068* | |
| C5 | 1.4684 (4) | −0.13228 (16) | 0.40058 (9) | 0.0587 (4) | |
| H5 | 1.5712 | −0.1922 | 0.4285 | 0.070* | |
| C6 | 1.2984 (4) | −0.03922 (15) | 0.42096 (7) | 0.0523 (4) | |
| H6 | 1.2786 | −0.0356 | 0.4636 | 0.063* | |
| C7 | 0.7030 (3) | 0.40755 (11) | 0.52514 (6) | 0.0325 (3) | |
| H7 | 0.8444 | 0.3440 | 0.5427 | 0.039* | |
| C8 | 0.5869 (3) | 0.40386 (11) | 0.46123 (5) | 0.0312 (3) | |
| C9 | 0.7148 (3) | 0.29317 (12) | 0.42838 (6) | 0.0380 (3) | |
| O1 | 0.6529 (3) | 0.28618 (10) | 0.36938 (5) | 0.0588 (3) | |
| O2 | 0.8806 (3) | 0.21344 (9) | 0.45984 (5) | 0.0591 (3) | |
| C10 | 0.3760 (3) | 0.50071 (11) | 0.43487 (5) | 0.0315 (3) | |
| C11 | 0.2130 (3) | 0.52081 (12) | 0.36717 (6) | 0.0386 (3) | |
| O3 | 0.0283 (3) | 0.60888 (10) | 0.35332 (5) | 0.0571 (3) | |
| O4 | 0.2721 (3) | 0.44339 (10) | 0.32502 (4) | 0.0556 (3) | |
| H4A | 0.448 (5) | 0.3738 (17) | 0.3439 (8) | 0.067* |
| N1 | 0.0464 (7) | 0.0473 (7) | 0.0338 (6) | −0.0050 (5) | 0.0072 (5) | −0.0078 (5) |
| C1 | 0.0391 (7) | 0.0395 (7) | 0.0316 (7) | −0.0064 (5) | 0.0038 (5) | −0.0049 (5) |
| N2 | 0.0690 (9) | 0.0481 (7) | 0.0339 (6) | 0.0058 (6) | 0.0017 (6) | −0.0040 (6) |
| C3 | 0.0463 (8) | 0.0510 (9) | 0.0452 (8) | −0.0037 (7) | 0.0129 (6) | −0.0118 (7) |
| C4 | 0.0450 (8) | 0.0447 (8) | 0.0820 (12) | 0.0006 (7) | 0.0131 (8) | −0.0058 (8) |
| C5 | 0.0511 (9) | 0.0552 (9) | 0.0664 (11) | −0.0078 (7) | 0.0001 (8) | 0.0187 (8) |
| C6 | 0.0516 (9) | 0.0648 (10) | 0.0387 (8) | −0.0144 (8) | 0.0025 (7) | 0.0090 (7) |
| C7 | 0.0367 (6) | 0.0310 (6) | 0.0303 (6) | −0.0027 (5) | 0.0067 (5) | 0.0019 (5) |
| C8 | 0.0349 (6) | 0.0316 (6) | 0.0284 (6) | −0.0069 (5) | 0.0091 (5) | −0.0015 (5) |
| C9 | 0.0437 (7) | 0.0364 (7) | 0.0351 (7) | −0.0050 (6) | 0.0102 (6) | −0.0056 (5) |
| O1 | 0.0832 (8) | 0.0600 (7) | 0.0336 (6) | 0.0173 (6) | 0.0113 (5) | −0.0114 (5) |
| O2 | 0.0841 (8) | 0.0469 (6) | 0.0453 (6) | 0.0203 (6) | 0.0074 (5) | −0.0048 (5) |
| C10 | 0.0358 (6) | 0.0336 (6) | 0.0259 (6) | −0.0087 (5) | 0.0069 (5) | 0.0005 (5) |
| C11 | 0.0451 (7) | 0.0429 (7) | 0.0275 (6) | −0.0065 (6) | 0.0055 (5) | 0.0006 (5) |
| O3 | 0.0777 (7) | 0.0550 (7) | 0.0336 (6) | 0.0151 (6) | −0.0053 (5) | 0.0017 (4) |
| O4 | 0.0763 (8) | 0.0634 (7) | 0.0257 (5) | 0.0096 (6) | 0.0045 (5) | −0.0065 (5) |
| N1—C1 | 1.3281 (17) | C6—H6 | 0.9300 |
| N1—C6 | 1.3392 (19) | C7—C8 | 1.3707 (17) |
| N1—H1A | 0.913 (16) | C7—C10i | 1.3809 (17) |
| C1—N2 | 1.3154 (19) | C7—H7 | 0.9300 |
| C1—C3 | 1.3964 (19) | C8—C10 | 1.4049 (18) |
| N2—H2A | 0.831 (19) | C8—C9 | 1.5197 (17) |
| N2—H2B | 0.880 (19) | C9—O2 | 1.2212 (16) |
| C3—C4 | 1.357 (2) | C9—O1 | 1.2483 (16) |
| C3—H3 | 0.9300 | C10—C7i | 1.3809 (17) |
| C4—C5 | 1.377 (2) | C10—C11 | 1.5037 (17) |
| C4—H4 | 0.9300 | C11—O3 | 1.2133 (17) |
| C5—C6 | 1.329 (2) | C11—O4 | 1.2811 (16) |
| C5—H5 | 0.9300 | O4—H4A | 1.06 (2) |
| C1—N1—C6 | 122.39 (13) | C5—C6—H6 | 119.1 |
| C1—N1—H1A | 121.0 (10) | N1—C6—H6 | 119.1 |
| C6—N1—H1A | 116.6 (10) | C8—C7—C10i | 124.36 (12) |
| N2—C1—N1 | 118.70 (13) | C8—C7—H7 | 117.8 |
| N2—C1—C3 | 124.06 (13) | C10i—C7—H7 | 117.8 |
| N1—C1—C3 | 117.24 (13) | C7—C8—C10 | 117.52 (11) |
| C1—N2—H2A | 117.8 (12) | C7—C8—C9 | 113.54 (11) |
| C1—N2—H2B | 120.4 (12) | C10—C8—C9 | 128.93 (11) |
| H2A—N2—H2B | 121.5 (17) | O2—C9—O1 | 120.93 (12) |
| C4—C3—C1 | 120.15 (14) | O2—C9—C8 | 119.73 (11) |
| C4—C3—H3 | 119.9 | O1—C9—C8 | 119.33 (12) |
| C1—C3—H3 | 119.9 | C7i—C10—C8 | 118.12 (11) |
| C3—C4—C5 | 120.25 (15) | C7i—C10—C11 | 112.67 (11) |
| C3—C4—H4 | 119.9 | C8—C10—C11 | 129.20 (11) |
| C5—C4—H4 | 119.9 | O3—C11—O4 | 121.18 (12) |
| C6—C5—C4 | 118.13 (15) | O3—C11—C10 | 119.99 (12) |
| C6—C5—H5 | 120.9 | O4—C11—C10 | 118.83 (12) |
| C4—C5—H5 | 120.9 | C11—O4—H4A | 112.5 (9) |
| C5—C6—N1 | 121.83 (15) | ||
| C6—N1—C1—N2 | −179.42 (13) | C10—C8—C9—O2 | −175.39 (13) |
| C6—N1—C1—C3 | 0.14 (19) | C7—C8—C9—O1 | −173.10 (12) |
| N2—C1—C3—C4 | 178.46 (14) | C10—C8—C9—O1 | 5.7 (2) |
| N1—C1—C3—C4 | −1.1 (2) | C7—C8—C10—C7i | −0.56 (18) |
| C1—C3—C4—C5 | 0.8 (2) | C9—C8—C10—C7i | −179.36 (11) |
| C3—C4—C5—C6 | 0.5 (2) | C7—C8—C10—C11 | −179.96 (11) |
| C4—C5—C6—N1 | −1.4 (2) | C9—C8—C10—C11 | 1.2 (2) |
| C1—N1—C6—C5 | 1.1 (2) | C7i—C10—C11—O3 | −1.71 (17) |
| C10i—C7—C8—C10 | 0.60 (19) | C8—C10—C11—O3 | 177.72 (13) |
| C10i—C7—C8—C9 | 179.58 (11) | C7i—C10—C11—O4 | 178.55 (12) |
| C7—C8—C9—O2 | 5.76 (17) | C8—C10—C11—O4 | −2.01 (19) |
| H··· | ||||
| N1—H1 | 0.913 (16) | 1.904 (17) | 2.7852 (15) | 161.6 (15) |
| N1—H1 | 0.913 (16) | 2.478 (16) | 3.2413 (16) | 141.4 (13) |
| N2—H2 | 0.831 (19) | 2.125 (19) | 2.9520 (17) | 173.0 (17) |
| N2—H2 | 0.880 (19) | 2.14 (2) | 2.9759 (17) | 157.6 (16) |
| O4—H4 | 1.06 (2) | 1.31 (2) | 2.3766 (15) | 176.8 (17) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.913 (16) | 1.904 (17) | 2.7852 (15) | 161.6 (15) |
| N1—H1 | 0.913 (16) | 2.478 (16) | 3.2413 (16) | 141.4 (13) |
| N2—H2 | 0.831 (19) | 2.125 (19) | 2.9520 (17) | 173.0 (17) |
| N2—H2 | 0.880 (19) | 2.14 (2) | 2.9759 (17) | 157.6 (16) |
| O4—H4 | 1.06 (2) | 1.31 (2) | 2.3766 (15) | 176.8 (17) |
Symmetry code: (i) .