Literature DB >> 22590390

Bis(2-amino-pyridinium) 2,5-dicarb-oxy-benzene-1,4-dicarboxyl-ate.

V H Rodrigues, Mohammad Hakimi, Elham Motieiyan.   

Abstract

In the title compound, 2C(5)H(7)N(2) (+)·C(10)H(4)O(8) (2-), the 2-amino-pyridinium (2-apyH) cation and 2,5-dicarb-oxy-benzene-1,4-dicarboxyl-ate (btcH2) anion are both nearly planar, with r.m.s. deviations of 0.015 and 0.050 Å, respectively. The angle between the latter least-squares planes is 17.68 (9)°. The overall crystal structure results from the packing of two-dimensional networks, formed by alternating 2-apyH and btcH2 linked by hydrogen bonds, parallel to (100).

Entities:  

Year:  2012        PMID: 22590390      PMCID: PMC3344628          DOI: 10.1107/S1600536812017254

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar and most common conformations of 2-amino­pyridinium, see: Guelmami & Jouini (2011 ▶); Chitra et al. (2008 ▶); Quah et al. (2008 ▶); Bis & Zaworotko (2005 ▶); Büyükgüngör & Odabas˛ogˇlu (2002 ▶); Odabas˛ogˇlu et al. (2003 ▶); Acheson (1967 ▶). For similar and most common conformations of 2,5-dicarb­oxy­benzene-1,4-dicarboxyl­ate, see: Dong et al. (2011 ▶); Wang & Tang (2010 ▶). For graph-set analysis of hydrogen-bond patterns in organic crystals, see: Etter et al. (1990 ▶).

Experimental

Crystal data

2C5H7N2C10H4O8 2− M = 442.38 Monoclinic, a = 4.0165 (1) Å b = 10.8098 (4) Å c = 21.4036 (7) Å β = 99.535 (2)° V = 916.45 (5) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 273 K 0.3 × 0.2 × 0.15 mm

Data collection

Bruker–Nonius APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.755, T max = 1.000 18838 measured reflections 2209 independent reflections 1652 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.102 S = 1.01 2209 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker–Nonius, 2004 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812017254/bt5880sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017254/bt5880Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812017254/bt5880Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C5H7N2+·C10H4O82F(000) = 460
Mr = 442.38Dx = 1.603 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7209 reflections
a = 4.0165 (1) Åθ = 2.7–24.9°
b = 10.8098 (4) ŵ = 0.13 mm1
c = 21.4036 (7) ÅT = 273 K
β = 99.535 (2)°Block, yellow
V = 916.45 (5) Å30.3 × 0.2 × 0.15 mm
Z = 2
Bruker–Nonius APEXII CCD area-detector diffractometer2209 independent reflections
Radiation source: fine-focus sealed tube1652 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 28.2°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −4→5
Tmin = 0.755, Tmax = 1.000k = −13→14
18838 measured reflectionsl = −27→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0519P)2 + 0.1584P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2209 reflectionsΔρmax = 0.20 e Å3
158 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.014 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N11.1547 (3)0.04940 (11)0.38178 (5)0.0424 (3)
H1A1.040 (4)0.1095 (15)0.3993 (8)0.051*
C11.1679 (3)0.04905 (12)0.32019 (6)0.0370 (3)
N21.0229 (4)0.14007 (12)0.28496 (6)0.0511 (3)
H2A1.021 (4)0.1363 (16)0.2461 (9)0.061*
H2B0.916 (5)0.1990 (16)0.3019 (9)0.061*
C31.3390 (4)−0.04878 (13)0.29700 (7)0.0469 (4)
H31.3508−0.05320.25400.056*
C41.4882 (4)−0.13741 (15)0.33704 (9)0.0569 (4)
H41.6042−0.20190.32150.068*
C51.4684 (4)−0.13228 (16)0.40058 (9)0.0587 (4)
H51.5712−0.19220.42850.070*
C61.2984 (4)−0.03922 (15)0.42096 (7)0.0523 (4)
H61.2786−0.03560.46360.063*
C70.7030 (3)0.40755 (11)0.52514 (6)0.0325 (3)
H70.84440.34400.54270.039*
C80.5869 (3)0.40386 (11)0.46123 (5)0.0312 (3)
C90.7148 (3)0.29317 (12)0.42838 (6)0.0380 (3)
O10.6529 (3)0.28618 (10)0.36938 (5)0.0588 (3)
O20.8806 (3)0.21344 (9)0.45984 (5)0.0591 (3)
C100.3760 (3)0.50071 (11)0.43487 (5)0.0315 (3)
C110.2130 (3)0.52081 (12)0.36717 (6)0.0386 (3)
O30.0283 (3)0.60888 (10)0.35332 (5)0.0571 (3)
O40.2721 (3)0.44339 (10)0.32502 (4)0.0556 (3)
H4A0.448 (5)0.3738 (17)0.3439 (8)0.067*
U11U22U33U12U13U23
N10.0464 (7)0.0473 (7)0.0338 (6)−0.0050 (5)0.0072 (5)−0.0078 (5)
C10.0391 (7)0.0395 (7)0.0316 (7)−0.0064 (5)0.0038 (5)−0.0049 (5)
N20.0690 (9)0.0481 (7)0.0339 (6)0.0058 (6)0.0017 (6)−0.0040 (6)
C30.0463 (8)0.0510 (9)0.0452 (8)−0.0037 (7)0.0129 (6)−0.0118 (7)
C40.0450 (8)0.0447 (8)0.0820 (12)0.0006 (7)0.0131 (8)−0.0058 (8)
C50.0511 (9)0.0552 (9)0.0664 (11)−0.0078 (7)0.0001 (8)0.0187 (8)
C60.0516 (9)0.0648 (10)0.0387 (8)−0.0144 (8)0.0025 (7)0.0090 (7)
C70.0367 (6)0.0310 (6)0.0303 (6)−0.0027 (5)0.0067 (5)0.0019 (5)
C80.0349 (6)0.0316 (6)0.0284 (6)−0.0069 (5)0.0091 (5)−0.0015 (5)
C90.0437 (7)0.0364 (7)0.0351 (7)−0.0050 (6)0.0102 (6)−0.0056 (5)
O10.0832 (8)0.0600 (7)0.0336 (6)0.0173 (6)0.0113 (5)−0.0114 (5)
O20.0841 (8)0.0469 (6)0.0453 (6)0.0203 (6)0.0074 (5)−0.0048 (5)
C100.0358 (6)0.0336 (6)0.0259 (6)−0.0087 (5)0.0069 (5)0.0005 (5)
C110.0451 (7)0.0429 (7)0.0275 (6)−0.0065 (6)0.0055 (5)0.0006 (5)
O30.0777 (7)0.0550 (7)0.0336 (6)0.0151 (6)−0.0053 (5)0.0017 (4)
O40.0763 (8)0.0634 (7)0.0257 (5)0.0096 (6)0.0045 (5)−0.0065 (5)
N1—C11.3281 (17)C6—H60.9300
N1—C61.3392 (19)C7—C81.3707 (17)
N1—H1A0.913 (16)C7—C10i1.3809 (17)
C1—N21.3154 (19)C7—H70.9300
C1—C31.3964 (19)C8—C101.4049 (18)
N2—H2A0.831 (19)C8—C91.5197 (17)
N2—H2B0.880 (19)C9—O21.2212 (16)
C3—C41.357 (2)C9—O11.2483 (16)
C3—H30.9300C10—C7i1.3809 (17)
C4—C51.377 (2)C10—C111.5037 (17)
C4—H40.9300C11—O31.2133 (17)
C5—C61.329 (2)C11—O41.2811 (16)
C5—H50.9300O4—H4A1.06 (2)
C1—N1—C6122.39 (13)C5—C6—H6119.1
C1—N1—H1A121.0 (10)N1—C6—H6119.1
C6—N1—H1A116.6 (10)C8—C7—C10i124.36 (12)
N2—C1—N1118.70 (13)C8—C7—H7117.8
N2—C1—C3124.06 (13)C10i—C7—H7117.8
N1—C1—C3117.24 (13)C7—C8—C10117.52 (11)
C1—N2—H2A117.8 (12)C7—C8—C9113.54 (11)
C1—N2—H2B120.4 (12)C10—C8—C9128.93 (11)
H2A—N2—H2B121.5 (17)O2—C9—O1120.93 (12)
C4—C3—C1120.15 (14)O2—C9—C8119.73 (11)
C4—C3—H3119.9O1—C9—C8119.33 (12)
C1—C3—H3119.9C7i—C10—C8118.12 (11)
C3—C4—C5120.25 (15)C7i—C10—C11112.67 (11)
C3—C4—H4119.9C8—C10—C11129.20 (11)
C5—C4—H4119.9O3—C11—O4121.18 (12)
C6—C5—C4118.13 (15)O3—C11—C10119.99 (12)
C6—C5—H5120.9O4—C11—C10118.83 (12)
C4—C5—H5120.9C11—O4—H4A112.5 (9)
C5—C6—N1121.83 (15)
C6—N1—C1—N2−179.42 (13)C10—C8—C9—O2−175.39 (13)
C6—N1—C1—C30.14 (19)C7—C8—C9—O1−173.10 (12)
N2—C1—C3—C4178.46 (14)C10—C8—C9—O15.7 (2)
N1—C1—C3—C4−1.1 (2)C7—C8—C10—C7i−0.56 (18)
C1—C3—C4—C50.8 (2)C9—C8—C10—C7i−179.36 (11)
C3—C4—C5—C60.5 (2)C7—C8—C10—C11−179.96 (11)
C4—C5—C6—N1−1.4 (2)C9—C8—C10—C111.2 (2)
C1—N1—C6—C51.1 (2)C7i—C10—C11—O3−1.71 (17)
C10i—C7—C8—C100.60 (19)C8—C10—C11—O3177.72 (13)
C10i—C7—C8—C9179.58 (11)C7i—C10—C11—O4178.55 (12)
C7—C8—C9—O25.76 (17)C8—C10—C11—O4−2.01 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O20.913 (16)1.904 (17)2.7852 (15)161.6 (15)
N1—H1A···O10.913 (16)2.478 (16)3.2413 (16)141.4 (13)
N2—H2A···O3ii0.831 (19)2.125 (19)2.9520 (17)173.0 (17)
N2—H2B···O10.880 (19)2.14 (2)2.9759 (17)157.6 (16)
O4—H4A···O11.06 (2)1.31 (2)2.3766 (15)176.8 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O20.913 (16)1.904 (17)2.7852 (15)161.6 (15)
N1—H1A⋯O10.913 (16)2.478 (16)3.2413 (16)141.4 (13)
N2—H2A⋯O3i0.831 (19)2.125 (19)2.9520 (17)173.0 (17)
N2—H2B⋯O10.880 (19)2.14 (2)2.9759 (17)157.6 (16)
O4—H4A⋯O11.06 (2)1.31 (2)2.3766 (15)176.8 (17)

Symmetry code: (i) .

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