| Literature DB >> 21589613 |
Guangwen He, Srinivasulu Aitipamula, Pui Shan Chow, Reginald B H Tan.
Abstract
In the title salt, C(5)H(7)N(2) (+)·C(10)H(9)O(2) (-), 2-amino-pyridine and 1-phenyl-cyclo-propane-1-carb-oxy-lic acid crystallize together, forming a 2-amino-pyridinium-carboxyl-ate supra-molecular heterosynthon involving two N-H⋯O hydrogen bonds, which in turn dimerizes to form a four-component supra-molecular unit also sustained by N-H⋯O hydrogen bonding. A C-H⋯π inter-action between a pyridine C-H group and the centroid of the phenyl ring of the anion further stabilizes the four-component supra-molecular unit. The overall crystal packing also features C-H⋯O inter-actions.Entities:
Year: 2010 PMID: 21589613 PMCID: PMC3011640 DOI: 10.1107/S1600536810049093
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H7N2+·C10H9O2− | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1840 reflections | |
| θ = 2.3–30.9° | |
| µ = 0.09 mm−1 | |
| α = 75.56 (3)° | |
| β = 87.72 (3)° | Block, colorless |
| γ = 72.79 (3)° | 0.33 × 0.33 × 0.22 mm |
| Rigaku Saturn CCD area-detector diffractometer | 3271 independent reflections |
| Radiation source: fine-focus sealed tube | 3103 reflections with |
| graphite | |
| ω scans | θmax = 28.3°, θmin = 2.3° |
| Absorption correction: multi-scan (Blessing, 1995) | |
| 9557 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3271 reflections | (Δ/σ)max < 0.001 |
| 184 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.24208 (10) | 0.61579 (11) | 0.84154 (10) | 0.0282 (2) | |
| N1 | 0.14380 (12) | 0.42572 (12) | 0.71820 (11) | 0.0242 (2) | |
| O2 | 0.43518 (12) | 0.64375 (12) | 0.67744 (10) | 0.0338 (2) | |
| N2 | 0.35609 (13) | 0.42026 (15) | 0.55735 (13) | 0.0309 (3) | |
| C1 | 0.22273 (14) | 0.37913 (14) | 0.60017 (13) | 0.0238 (2) | |
| C6 | 0.41282 (13) | 0.76759 (14) | 0.87938 (13) | 0.0234 (2) | |
| C3 | 0.02113 (16) | 0.25068 (15) | 0.57653 (14) | 0.0290 (3) | |
| H3 | −0.0231 | 0.1918 | 0.5263 | 0.035* | |
| C9 | 0.36026 (13) | 0.66849 (14) | 0.79228 (13) | 0.0235 (2) | |
| C11 | 0.71088 (14) | 0.73844 (14) | 0.88508 (13) | 0.0246 (2) | |
| H11 | 0.7259 | 0.6408 | 0.9589 | 0.029* | |
| C10 | 0.55559 (14) | 0.82560 (14) | 0.82490 (12) | 0.0230 (2) | |
| C12 | 0.84456 (14) | 0.79240 (15) | 0.83861 (13) | 0.0268 (3) | |
| H12 | 0.9499 | 0.7318 | 0.8806 | 0.032* | |
| C2 | 0.15868 (15) | 0.28868 (14) | 0.52668 (13) | 0.0257 (3) | |
| H2 | 0.2114 | 0.2548 | 0.4432 | 0.031* | |
| C5 | 0.00793 (15) | 0.38539 (15) | 0.76921 (13) | 0.0269 (3) | |
| H5 | −0.0431 | 0.4190 | 0.8534 | 0.032* | |
| C14 | 0.67030 (17) | 1.02220 (15) | 0.66824 (15) | 0.0319 (3) | |
| H14 | 0.6560 | 1.1190 | 0.5934 | 0.038* | |
| C15 | 0.53697 (15) | 0.96742 (15) | 0.71553 (14) | 0.0292 (3) | |
| H15 | 0.4320 | 1.0277 | 0.6725 | 0.035* | |
| C4 | −0.05647 (16) | 0.29794 (16) | 0.70228 (14) | 0.0304 (3) | |
| H4 | −0.1509 | 0.2694 | 0.7390 | 0.036* | |
| C7 | 0.39043 (16) | 0.72252 (17) | 1.04712 (14) | 0.0321 (3) | |
| H7A | 0.3474 | 0.6310 | 1.0878 | 0.038* | |
| H7B | 0.4712 | 0.7340 | 1.1135 | 0.038* | |
| C13 | 0.82364 (15) | 0.93486 (15) | 0.73082 (14) | 0.0288 (3) | |
| H13 | 0.9145 | 0.9725 | 0.6999 | 0.035* | |
| C8 | 0.27730 (15) | 0.87131 (17) | 0.95326 (15) | 0.0332 (3) | |
| H8A | 0.2883 | 0.9746 | 0.9617 | 0.040* | |
| H8B | 0.1645 | 0.8716 | 0.9359 | 0.040* | |
| H6 | 0.407 (2) | 0.393 (2) | 0.475 (2) | 0.038 (4)* | |
| H9 | 0.389 (2) | 0.492 (2) | 0.600 (2) | 0.041 (5)* | |
| H1 | 0.185 (2) | 0.496 (2) | 0.762 (2) | 0.044 (5)* |
| O1 | 0.0256 (4) | 0.0351 (5) | 0.0315 (5) | −0.0151 (3) | 0.0083 (3) | −0.0157 (4) |
| N1 | 0.0263 (5) | 0.0268 (5) | 0.0226 (5) | −0.0103 (4) | 0.0047 (4) | −0.0094 (4) |
| O2 | 0.0381 (5) | 0.0433 (5) | 0.0329 (5) | −0.0232 (4) | 0.0150 (4) | −0.0210 (4) |
| N2 | 0.0292 (5) | 0.0413 (6) | 0.0326 (6) | −0.0188 (5) | 0.0110 (4) | −0.0193 (5) |
| C1 | 0.0240 (5) | 0.0242 (5) | 0.0238 (5) | −0.0080 (4) | 0.0027 (4) | −0.0063 (4) |
| C6 | 0.0212 (5) | 0.0272 (6) | 0.0249 (5) | −0.0082 (4) | 0.0047 (4) | −0.0113 (4) |
| C3 | 0.0351 (6) | 0.0295 (6) | 0.0286 (6) | −0.0172 (5) | 0.0054 (5) | −0.0097 (5) |
| C9 | 0.0213 (5) | 0.0257 (5) | 0.0256 (5) | −0.0078 (4) | 0.0033 (4) | −0.0093 (4) |
| C11 | 0.0257 (6) | 0.0256 (5) | 0.0247 (5) | −0.0100 (4) | 0.0033 (4) | −0.0078 (4) |
| C10 | 0.0238 (5) | 0.0249 (5) | 0.0244 (5) | −0.0094 (4) | 0.0043 (4) | −0.0113 (4) |
| C12 | 0.0242 (5) | 0.0316 (6) | 0.0292 (6) | −0.0113 (4) | 0.0030 (4) | −0.0123 (5) |
| C2 | 0.0302 (6) | 0.0265 (6) | 0.0234 (5) | −0.0111 (4) | 0.0047 (4) | −0.0092 (4) |
| C5 | 0.0292 (6) | 0.0286 (6) | 0.0245 (5) | −0.0105 (5) | 0.0073 (4) | −0.0082 (4) |
| C14 | 0.0403 (7) | 0.0248 (6) | 0.0318 (6) | −0.0137 (5) | 0.0059 (5) | −0.0051 (5) |
| C15 | 0.0287 (6) | 0.0260 (6) | 0.0321 (6) | −0.0074 (5) | 0.0009 (5) | −0.0065 (5) |
| C4 | 0.0323 (6) | 0.0324 (6) | 0.0314 (6) | −0.0169 (5) | 0.0089 (5) | −0.0090 (5) |
| C7 | 0.0325 (6) | 0.0468 (8) | 0.0260 (6) | −0.0199 (6) | 0.0090 (5) | −0.0167 (5) |
| C13 | 0.0326 (6) | 0.0318 (6) | 0.0308 (6) | −0.0182 (5) | 0.0092 (5) | −0.0144 (5) |
| C8 | 0.0276 (6) | 0.0372 (7) | 0.0429 (7) | −0.0110 (5) | 0.0115 (5) | −0.0242 (6) |
| O1—C9 | 1.2702 (14) | C11—H11 | 0.9500 |
| N1—C1 | 1.3524 (15) | C10—C15 | 1.3927 (17) |
| N1—C5 | 1.3597 (15) | C12—C13 | 1.3870 (18) |
| N1—H1 | 0.983 (19) | C12—H12 | 0.9500 |
| O2—C9 | 1.2530 (15) | C2—H2 | 0.9500 |
| N2—C1 | 1.3261 (15) | C5—C4 | 1.3595 (18) |
| N2—H6 | 0.913 (18) | C5—H5 | 0.9500 |
| N2—H9 | 0.949 (19) | C14—C13 | 1.385 (2) |
| C1—C2 | 1.4178 (17) | C14—C15 | 1.3947 (17) |
| C6—C10 | 1.4977 (15) | C14—H14 | 0.9500 |
| C6—C9 | 1.5122 (16) | C15—H15 | 0.9500 |
| C6—C7 | 1.5201 (17) | C4—H4 | 0.9500 |
| C6—C8 | 1.5224 (17) | C7—C8 | 1.491 (2) |
| C3—C2 | 1.3614 (16) | C7—H7A | 0.9900 |
| C3—C4 | 1.4125 (18) | C7—H7B | 0.9900 |
| C3—H3 | 0.9500 | C13—H13 | 0.9500 |
| C11—C10 | 1.3918 (17) | C8—H8A | 0.9900 |
| C11—C12 | 1.3922 (16) | C8—H8B | 0.9900 |
| C1—N1—C5 | 121.81 (10) | C3—C2—C1 | 119.58 (11) |
| C1—N1—H1 | 117.1 (11) | C3—C2—H2 | 120.2 |
| C5—N1—H1 | 121.0 (11) | C1—C2—H2 | 120.2 |
| C1—N2—H6 | 118.9 (11) | C4—C5—N1 | 121.41 (11) |
| C1—N2—H9 | 120.8 (11) | C4—C5—H5 | 119.3 |
| H6—N2—H9 | 119.5 (15) | N1—C5—H5 | 119.3 |
| N2—C1—N1 | 118.89 (11) | C13—C14—C15 | 119.75 (12) |
| N2—C1—C2 | 122.65 (11) | C13—C14—H14 | 120.1 |
| N1—C1—C2 | 118.46 (11) | C15—C14—H14 | 120.1 |
| C10—C6—C9 | 117.44 (9) | C10—C15—C14 | 120.94 (12) |
| C10—C6—C7 | 118.19 (10) | C10—C15—H15 | 119.5 |
| C9—C6—C7 | 115.04 (10) | C14—C15—H15 | 119.5 |
| C10—C6—C8 | 118.76 (10) | C5—C4—C3 | 118.07 (11) |
| C9—C6—C8 | 115.60 (10) | C5—C4—H4 | 121.0 |
| C7—C6—C8 | 58.71 (9) | C3—C4—H4 | 121.0 |
| C2—C3—C4 | 120.64 (11) | C8—C7—C6 | 60.72 (9) |
| C2—C3—H3 | 119.7 | C8—C7—H7A | 117.7 |
| C4—C3—H3 | 119.7 | C6—C7—H7A | 117.7 |
| O2—C9—O1 | 124.47 (11) | C8—C7—H7B | 117.7 |
| O2—C9—C6 | 118.39 (10) | C6—C7—H7B | 117.7 |
| O1—C9—C6 | 117.13 (10) | H7A—C7—H7B | 114.8 |
| C10—C11—C12 | 120.92 (11) | C14—C13—C12 | 120.03 (11) |
| C10—C11—H11 | 119.5 | C14—C13—H13 | 120.0 |
| C12—C11—H11 | 119.5 | C12—C13—H13 | 120.0 |
| C11—C10—C15 | 118.48 (11) | C7—C8—C6 | 60.57 (8) |
| C11—C10—C6 | 120.06 (10) | C7—C8—H8A | 117.7 |
| C15—C10—C6 | 121.46 (11) | C6—C8—H8A | 117.7 |
| C13—C12—C11 | 119.87 (11) | C7—C8—H8B | 117.7 |
| C13—C12—H12 | 120.1 | C6—C8—H8B | 117.7 |
| C11—C12—H12 | 120.1 | H8A—C8—H8B | 114.8 |
| Cg1 is the centroid of the C10–C15 ring. |
| H··· | ||||
| N1—H1···O1 | 0.983 (19) | 1.64 (2) | 2.6255 (15) | 176.2 (17) |
| N2—H6···O2i | 0.913 (18) | 1.938 (18) | 2.8230 (16) | 162.6 (16) |
| N2—H9···O2 | 0.949 (19) | 1.844 (19) | 2.7903 (15) | 175.2 (16) |
| C11—H11···O1ii | 0.95 | 2.53 | 3.479 (2) | 178 |
| C12—H12···O1iii | 0.95 | 2.47 | 3.3212 (18) | 149 |
| C2—H2···Cg1i | 0.95 | 2.62 | 3.5464 (15) | 166 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C10–C15 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1 | 0.983 (19) | 1.64 (2) | 2.6255 (15) | 176.2 (17) |
| N2—H6⋯O2i | 0.913 (18) | 1.938 (18) | 2.8230 (16) | 162.6 (16) |
| N2—H9⋯O2 | 0.949 (19) | 1.844 (19) | 2.7903 (15) | 175.2 (16) |
| C11—H11⋯O1ii | 0.95 | 2.53 | 3.479 (2) | 178 |
| C12—H12⋯O1iii | 0.95 | 2.47 | 3.3212 (18) | 149 |
| C2—H2⋯ | 0.95 | 2.62 | 3.5464 (15) | 166 |
Symmetry codes: (i) ; (ii) ; (iii) .