Literature DB >> 21589613

2-Amino-pyridinium 1-phenyl-cyclo-propane-1-carboxyl-ate.

Guangwen He, Srinivasulu Aitipamula, Pui Shan Chow, Reginald B H Tan.   

Abstract

In the title salt, C(5)H(7)N(2) (+)·C(10)H(9)O(2) (-), 2-amino-pyridine and 1-phenyl-cyclo-propane-1-carb-oxy-lic acid crystallize together, forming a 2-amino-pyridinium-carboxyl-ate supra-molecular heterosynthon involving two N-H⋯O hydrogen bonds, which in turn dimerizes to form a four-component supra-molecular unit also sustained by N-H⋯O hydrogen bonding. A C-H⋯π inter-action between a pyridine C-H group and the centroid of the phenyl ring of the anion further stabilizes the four-component supra-molecular unit. The overall crystal packing also features C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21589613      PMCID: PMC3011640          DOI: 10.1107/S1600536810049093

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural studies of 2-amino­pyridine, see: Chao et al. (1975 ▶). For recent mol­ecular co-crystals and salts of 2-amino­pyridine, see: Sivaramkumar et al. (2010 ▶); Chitra et al. (2008 ▶); Quah et al. (2008 ▶); Xie (2007 ▶); Li et al. (2006 ▶, 2007 ▶); Yang & Qu (2006 ▶); Bis & Zaworotko (2005 ▶). For the use of 2-amino­pyridine in the synthesis of pharmaceuticals, see: O’Neil (2006 ▶). For our previous work on screening for molecular co-crystals and salts, see: He et al. (2009 ▶).

Experimental

Crystal data

C5H7N2C10H9O2 M = 256.30 Triclinic, a = 8.6147 (17) Å b = 9.0555 (18) Å c = 9.2346 (18) Å α = 75.56 (3)° β = 87.72 (3)° γ = 72.79 (3)° V = 666.0 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 110 K 0.33 × 0.33 × 0.22 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.972, T max = 0.981 9557 measured reflections 3271 independent reflections 3103 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.145 S = 1.12 3271 reflections 184 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810049093/ng5075sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810049093/ng5075Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N2+·C10H9O2Z = 2
Mr = 256.30F(000) = 272
Triclinic, P1Dx = 1.278 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6147 (17) ÅCell parameters from 1840 reflections
b = 9.0555 (18) Åθ = 2.3–30.9°
c = 9.2346 (18) ŵ = 0.09 mm1
α = 75.56 (3)°T = 110 K
β = 87.72 (3)°Block, colorless
γ = 72.79 (3)°0.33 × 0.33 × 0.22 mm
V = 666.0 (2) Å3
Rigaku Saturn CCD area-detector diffractometer3271 independent reflections
Radiation source: fine-focus sealed tube3103 reflections with I > 2σ(I)
graphiteRint = 0.017
ω scansθmax = 28.3°, θmin = 2.3°
Absorption correction: multi-scan (Blessing, 1995)h = −11→11
Tmin = 0.972, Tmax = 0.981k = −11→11
9557 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0812P)2 + 0.1565P] where P = (Fo2 + 2Fc2)/3
3271 reflections(Δ/σ)max < 0.001
184 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.24208 (10)0.61579 (11)0.84154 (10)0.0282 (2)
N10.14380 (12)0.42572 (12)0.71820 (11)0.0242 (2)
O20.43518 (12)0.64375 (12)0.67744 (10)0.0338 (2)
N20.35609 (13)0.42026 (15)0.55735 (13)0.0309 (3)
C10.22273 (14)0.37913 (14)0.60017 (13)0.0238 (2)
C60.41282 (13)0.76759 (14)0.87938 (13)0.0234 (2)
C30.02113 (16)0.25068 (15)0.57653 (14)0.0290 (3)
H3−0.02310.19180.52630.035*
C90.36026 (13)0.66849 (14)0.79228 (13)0.0235 (2)
C110.71088 (14)0.73844 (14)0.88508 (13)0.0246 (2)
H110.72590.64080.95890.029*
C100.55559 (14)0.82560 (14)0.82490 (12)0.0230 (2)
C120.84456 (14)0.79240 (15)0.83861 (13)0.0268 (3)
H120.94990.73180.88060.032*
C20.15868 (15)0.28868 (14)0.52668 (13)0.0257 (3)
H20.21140.25480.44320.031*
C50.00793 (15)0.38539 (15)0.76921 (13)0.0269 (3)
H5−0.04310.41900.85340.032*
C140.67030 (17)1.02220 (15)0.66824 (15)0.0319 (3)
H140.65601.11900.59340.038*
C150.53697 (15)0.96742 (15)0.71553 (14)0.0292 (3)
H150.43201.02770.67250.035*
C4−0.05647 (16)0.29794 (16)0.70228 (14)0.0304 (3)
H4−0.15090.26940.73900.036*
C70.39043 (16)0.72252 (17)1.04712 (14)0.0321 (3)
H7A0.34740.63101.08780.038*
H7B0.47120.73401.11350.038*
C130.82364 (15)0.93486 (15)0.73082 (14)0.0288 (3)
H130.91450.97250.69990.035*
C80.27730 (15)0.87131 (17)0.95326 (15)0.0332 (3)
H8A0.28830.97460.96170.040*
H8B0.16450.87160.93590.040*
H60.407 (2)0.393 (2)0.475 (2)0.038 (4)*
H90.389 (2)0.492 (2)0.600 (2)0.041 (5)*
H10.185 (2)0.496 (2)0.762 (2)0.044 (5)*
U11U22U33U12U13U23
O10.0256 (4)0.0351 (5)0.0315 (5)−0.0151 (3)0.0083 (3)−0.0157 (4)
N10.0263 (5)0.0268 (5)0.0226 (5)−0.0103 (4)0.0047 (4)−0.0094 (4)
O20.0381 (5)0.0433 (5)0.0329 (5)−0.0232 (4)0.0150 (4)−0.0210 (4)
N20.0292 (5)0.0413 (6)0.0326 (6)−0.0188 (5)0.0110 (4)−0.0193 (5)
C10.0240 (5)0.0242 (5)0.0238 (5)−0.0080 (4)0.0027 (4)−0.0063 (4)
C60.0212 (5)0.0272 (6)0.0249 (5)−0.0082 (4)0.0047 (4)−0.0113 (4)
C30.0351 (6)0.0295 (6)0.0286 (6)−0.0172 (5)0.0054 (5)−0.0097 (5)
C90.0213 (5)0.0257 (5)0.0256 (5)−0.0078 (4)0.0033 (4)−0.0093 (4)
C110.0257 (6)0.0256 (5)0.0247 (5)−0.0100 (4)0.0033 (4)−0.0078 (4)
C100.0238 (5)0.0249 (5)0.0244 (5)−0.0094 (4)0.0043 (4)−0.0113 (4)
C120.0242 (5)0.0316 (6)0.0292 (6)−0.0113 (4)0.0030 (4)−0.0123 (5)
C20.0302 (6)0.0265 (6)0.0234 (5)−0.0111 (4)0.0047 (4)−0.0092 (4)
C50.0292 (6)0.0286 (6)0.0245 (5)−0.0105 (5)0.0073 (4)−0.0082 (4)
C140.0403 (7)0.0248 (6)0.0318 (6)−0.0137 (5)0.0059 (5)−0.0051 (5)
C150.0287 (6)0.0260 (6)0.0321 (6)−0.0074 (5)0.0009 (5)−0.0065 (5)
C40.0323 (6)0.0324 (6)0.0314 (6)−0.0169 (5)0.0089 (5)−0.0090 (5)
C70.0325 (6)0.0468 (8)0.0260 (6)−0.0199 (6)0.0090 (5)−0.0167 (5)
C130.0326 (6)0.0318 (6)0.0308 (6)−0.0182 (5)0.0092 (5)−0.0144 (5)
C80.0276 (6)0.0372 (7)0.0429 (7)−0.0110 (5)0.0115 (5)−0.0242 (6)
O1—C91.2702 (14)C11—H110.9500
N1—C11.3524 (15)C10—C151.3927 (17)
N1—C51.3597 (15)C12—C131.3870 (18)
N1—H10.983 (19)C12—H120.9500
O2—C91.2530 (15)C2—H20.9500
N2—C11.3261 (15)C5—C41.3595 (18)
N2—H60.913 (18)C5—H50.9500
N2—H90.949 (19)C14—C131.385 (2)
C1—C21.4178 (17)C14—C151.3947 (17)
C6—C101.4977 (15)C14—H140.9500
C6—C91.5122 (16)C15—H150.9500
C6—C71.5201 (17)C4—H40.9500
C6—C81.5224 (17)C7—C81.491 (2)
C3—C21.3614 (16)C7—H7A0.9900
C3—C41.4125 (18)C7—H7B0.9900
C3—H30.9500C13—H130.9500
C11—C101.3918 (17)C8—H8A0.9900
C11—C121.3922 (16)C8—H8B0.9900
C1—N1—C5121.81 (10)C3—C2—C1119.58 (11)
C1—N1—H1117.1 (11)C3—C2—H2120.2
C5—N1—H1121.0 (11)C1—C2—H2120.2
C1—N2—H6118.9 (11)C4—C5—N1121.41 (11)
C1—N2—H9120.8 (11)C4—C5—H5119.3
H6—N2—H9119.5 (15)N1—C5—H5119.3
N2—C1—N1118.89 (11)C13—C14—C15119.75 (12)
N2—C1—C2122.65 (11)C13—C14—H14120.1
N1—C1—C2118.46 (11)C15—C14—H14120.1
C10—C6—C9117.44 (9)C10—C15—C14120.94 (12)
C10—C6—C7118.19 (10)C10—C15—H15119.5
C9—C6—C7115.04 (10)C14—C15—H15119.5
C10—C6—C8118.76 (10)C5—C4—C3118.07 (11)
C9—C6—C8115.60 (10)C5—C4—H4121.0
C7—C6—C858.71 (9)C3—C4—H4121.0
C2—C3—C4120.64 (11)C8—C7—C660.72 (9)
C2—C3—H3119.7C8—C7—H7A117.7
C4—C3—H3119.7C6—C7—H7A117.7
O2—C9—O1124.47 (11)C8—C7—H7B117.7
O2—C9—C6118.39 (10)C6—C7—H7B117.7
O1—C9—C6117.13 (10)H7A—C7—H7B114.8
C10—C11—C12120.92 (11)C14—C13—C12120.03 (11)
C10—C11—H11119.5C14—C13—H13120.0
C12—C11—H11119.5C12—C13—H13120.0
C11—C10—C15118.48 (11)C7—C8—C660.57 (8)
C11—C10—C6120.06 (10)C7—C8—H8A117.7
C15—C10—C6121.46 (11)C6—C8—H8A117.7
C13—C12—C11119.87 (11)C7—C8—H8B117.7
C13—C12—H12120.1C6—C8—H8B117.7
C11—C12—H12120.1H8A—C8—H8B114.8
Cg1 is the centroid of the C10–C15 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.983 (19)1.64 (2)2.6255 (15)176.2 (17)
N2—H6···O2i0.913 (18)1.938 (18)2.8230 (16)162.6 (16)
N2—H9···O20.949 (19)1.844 (19)2.7903 (15)175.2 (16)
C11—H11···O1ii0.952.533.479 (2)178
C12—H12···O1iii0.952.473.3212 (18)149
C2—H2···Cg1i0.952.623.5464 (15)166
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C10–C15 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.983 (19)1.64 (2)2.6255 (15)176.2 (17)
N2—H6⋯O2i0.913 (18)1.938 (18)2.8230 (16)162.6 (16)
N2—H9⋯O20.949 (19)1.844 (19)2.7903 (15)175.2 (16)
C11—H11⋯O1ii0.952.533.479 (2)178
C12—H12⋯O1iii0.952.473.3212 (18)149
C2—H2⋯Cg1i0.952.623.5464 (15)166

Symmetry codes: (i) ; (ii) ; (iii) .

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4.  2-Amino-pyridinium picrate.

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5.  Structure validation in chemical crystallography.

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  2 in total

1.  N,N-Dimethylpyridin-4-aminium 1-phenyl-cyclo-pentane-1-carboxyl-ate monohydrate.

Authors:  Guangwen He; Srinivasulu Aitipamula; Pui Shan Chow; Reginald B H Tan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

2.  Pyrimidin-2-amine-1-phenyl-cyclo-pentane-1-carb-oxy-lic acid (1/1).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-02
  2 in total

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