Literature DB >> 21578618

(2,2'-Bipyridine-κN,N')diiodido-palladium(II).

Kwang Ha1.   

Abstract

The asymmetric unit of the title complex, [PdI(2)(C(10)H(8)N(2))], contains one half of the formula unit. The Pd(2+) ion is located on a twofold rotation axis and is four-coordinated in a slightly distorted square-planar environment by two N atoms of the chelating 2,2'-bipyridine ligand and two iodide ions. The compound displays inter-molecular π-π inter-actions between the pyridine rings of the ligand, the shortest centroid-centroid distance being 4.220 (4) Å.

Entities:  

Year:  2009        PMID: 21578618      PMCID: PMC2971767          DOI: 10.1107/S1600536809047771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of [PdX 2(bipy)] (bipy = 2,2′-bipyridine; X = Cl or Br), see: Maekawa et al. (1991 ▶); Smeets et al. (1997 ▶). For the crystal structures of [PdX 2(bipy)]·CH2Cl2 (X = Cl or Br), see: Vicente et al. (1997 ▶); Kim et al. (2009 ▶); Kim & Ha (2009 ▶).

Experimental

Crystal data

[PdI2(C10H8N2)] M = 516.38 Monoclinic, a = 17.232 (4) Å b = 9.8273 (19) Å c = 7.6868 (15) Å β = 111.438 (3)° V = 1211.6 (4) Å3 Z = 4 Mo Kα radiation μ = 6.60 mm−1 T = 293 K 0.25 × 0.05 × 0.05 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (; Bruker, 2000 ▶) T min = 0.139, T max = 0.719 3458 measured reflections 1240 independent reflections 1049 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.071 S = 1.06 1240 reflections 69 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.65 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809047771/is2486sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809047771/is2486Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdI2(C10H8N2)]F(000) = 936
Mr = 516.38Dx = 2.831 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 550 reflections
a = 17.232 (4) Åθ = 2.4–24.4°
b = 9.8273 (19) ŵ = 6.60 mm1
c = 7.6868 (15) ÅT = 293 K
β = 111.438 (3)°Needle, brown
V = 1211.6 (4) Å30.25 × 0.05 × 0.05 mm
Z = 4
Bruker SMART 1000 CCD diffractometer1240 independent reflections
Radiation source: fine-focus sealed tube1049 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 26.4°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −21→13
Tmin = 0.139, Tmax = 0.719k = −11→12
3458 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0328P)2] where P = (Fo2 + 2Fc2)/3
1240 reflections(Δ/σ)max < 0.001
69 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.65 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.0000−0.19021 (5)0.25000.03813 (17)
I10.10045 (3)−0.37899 (4)0.43052 (5)0.06273 (19)
N10.0755 (3)−0.0277 (4)0.3822 (6)0.0431 (10)
C10.1524 (4)−0.0339 (6)0.5132 (7)0.0546 (14)
H10.1767−0.11880.54990.066*
C20.1966 (4)0.0802 (7)0.5952 (9)0.0655 (17)
H20.24950.07250.68710.079*
C30.1617 (4)0.2050 (6)0.5399 (9)0.0656 (18)
H30.19020.28370.59440.079*
C40.0840 (4)0.2128 (6)0.4029 (9)0.0611 (17)
H40.05970.29720.36270.073*
C50.0418 (4)0.0954 (5)0.3248 (8)0.0446 (12)
U11U22U33U12U13U23
Pd10.0378 (3)0.0339 (3)0.0385 (3)0.0000.0091 (2)0.000
I10.0636 (3)0.0471 (3)0.0633 (3)0.01213 (18)0.0064 (2)0.00869 (16)
N10.043 (2)0.043 (2)0.045 (2)−0.002 (2)0.018 (2)−0.0005 (19)
C10.046 (3)0.062 (4)0.050 (3)−0.003 (3)0.012 (3)−0.004 (3)
C20.050 (4)0.087 (5)0.056 (4)−0.019 (4)0.016 (3)−0.015 (3)
C30.065 (4)0.060 (4)0.082 (4)−0.029 (4)0.039 (4)−0.028 (3)
C40.067 (4)0.050 (3)0.074 (4)−0.018 (3)0.036 (4)−0.015 (3)
C50.050 (3)0.039 (3)0.056 (3)−0.001 (2)0.033 (3)−0.002 (2)
Pd1—N12.076 (4)C2—C31.364 (9)
Pd1—N1i2.076 (4)C2—H20.9300
Pd1—I1i2.5704 (6)C3—C41.370 (9)
Pd1—I12.5704 (6)C3—H30.9300
N1—C11.341 (7)C4—C51.378 (7)
N1—C51.345 (6)C4—H40.9300
C1—C21.372 (8)C5—C5i1.480 (12)
C1—H10.9300
N1—Pd1—N1i79.4 (2)C3—C2—C1119.0 (6)
N1—Pd1—I1i175.85 (12)C3—C2—H2120.5
N1i—Pd1—I1i96.48 (12)C1—C2—H2120.5
N1—Pd1—I196.48 (12)C2—C3—C4119.0 (6)
N1i—Pd1—I1175.85 (12)C2—C3—H3120.5
I1i—Pd1—I187.61 (3)C4—C3—H3120.5
C1—N1—C5118.5 (5)C3—C4—C5120.0 (6)
C1—N1—Pd1127.1 (4)C3—C4—H4120.0
C5—N1—Pd1114.4 (4)C5—C4—H4120.0
N1—C1—C2122.6 (6)N1—C5—C4120.9 (6)
N1—C1—H1118.7N1—C5—C5i115.9 (3)
C2—C1—H1118.7C4—C5—C5i123.2 (4)
N1i—Pd1—N1—C1−178.7 (6)C2—C3—C4—C50.8 (9)
I1—Pd1—N1—C12.1 (5)C1—N1—C5—C4−2.1 (8)
N1i—Pd1—N1—C50.5 (3)Pd1—N1—C5—C4178.6 (4)
I1—Pd1—N1—C5−178.7 (3)C1—N1—C5—C5i177.9 (6)
C5—N1—C1—C22.3 (9)Pd1—N1—C5—C5i−1.4 (7)
Pd1—N1—C1—C2−178.5 (4)C3—C4—C5—N10.6 (9)
N1—C1—C2—C3−0.9 (10)C3—C4—C5—C5i−179.4 (6)
C1—C2—C3—C4−0.6 (10)
Pd1—N12.076 (4)
Pd1—I12.5704 (6)
N1—Pd1—N1i 79.4 (2)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2,2'-Bipyridine-κN,N')dibromido-palladium(II) dichloro-methane solvate.

Authors:  Nam-Ho Kim; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

3.  Redetermination of (2,2'-bipyridine-κN,N')dichlorido-palladium(II) dichloro-methane solvate.

Authors:  Nam-Ho Kim; In-Chul Hwang; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-07

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  3 in total

1.  Dichlorido(1,10-phenanthroline-κN,N')palladium(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

2.  Dibromido(1,10-phenanthroline-κN,N')palladium(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

3.  cis-Diiodido(N,N,N',N'-tetra-methyl-ethylenediamine-κ(2)N,N')palladium(II).

Authors:  Antonio Abellán-López; María Teresa Chicote-Olalla; Delia Bautista-Cerezo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28
  3 in total

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