| Literature DB >> 21579936 |
Kwang Ha1.
Abstract
In the title complex, [PdCl(2)(C(12)H(8)N(2))], the Pd(2+) ion is four-coordinated in a slightly distorted square-planar environment by two N atoms of the chelating 1,10-phenanthroline ligand and two chloride ions. The nearly planar mol-ecules, with a maximum deviation of 0.120 (3) Å from the least-squares plane, are stacked in columns along the c axis with a Pd⋯Pd distance of 4.8340 (9) Å. In the column, π-π inter-actions between adjacent six-membered rings are present, the shortest centroid-centroid distance being 3.680 (4) Å. A weak C-H⋯Cl inter-action is observed between the columns.Entities:
Year: 2009 PMID: 21579936 PMCID: PMC2980155 DOI: 10.1107/S1600536809052313
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl2(C12H8N2)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2653 reflections |
| θ = 2.4–28.2° | |
| µ = 2.09 mm−1 | |
| β = 109.314 (2)° | Needle, yellow |
| 0.36 × 0.06 × 0.04 mm | |
| Bruker SMART 1000 CCD diffractometer | 2767 independent reflections |
| Radiation source: fine-focus sealed tube | 1852 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.3°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 8118 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2767 reflections | (Δ/σ)max < 0.001 |
| 154 parameters | Δρmax = 2.90 e Å−3 |
| 0 restraints | Δρmin = −1.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.70739 (6) | 0.34324 (3) | 0.39119 (8) | 0.0214 (2) | |
| Cl1 | 0.7453 (2) | 0.47533 (11) | 0.4189 (3) | 0.0313 (5) | |
| Cl2 | 0.4658 (2) | 0.36052 (12) | 0.2078 (3) | 0.0366 (5) | |
| N1 | 0.6941 (6) | 0.2247 (3) | 0.3805 (9) | 0.0235 (13) | |
| N2 | 0.9182 (6) | 0.3184 (3) | 0.5594 (9) | 0.0211 (13) | |
| C1 | 0.5819 (9) | 0.1794 (5) | 0.2838 (12) | 0.0319 (18) | |
| H1 | 0.4931 | 0.2030 | 0.2036 | 0.038* | |
| C2 | 0.5898 (10) | 0.0983 (5) | 0.2958 (13) | 0.039 (2) | |
| H2 | 0.5073 | 0.0676 | 0.2244 | 0.046* | |
| C3 | 0.7163 (9) | 0.0629 (4) | 0.4102 (12) | 0.033 (2) | |
| H3 | 0.7214 | 0.0076 | 0.4202 | 0.040* | |
| C4 | 0.8382 (9) | 0.1085 (4) | 0.5127 (11) | 0.0286 (17) | |
| C5 | 0.9777 (10) | 0.0785 (4) | 0.6369 (12) | 0.0330 (19) | |
| H5 | 0.9904 | 0.0238 | 0.6561 | 0.040* | |
| C6 | 1.0895 (9) | 0.1263 (5) | 0.7254 (12) | 0.0318 (18) | |
| H6 | 1.1805 | 0.1045 | 0.8044 | 0.038* | |
| C7 | 1.0771 (8) | 0.2089 (4) | 0.7057 (11) | 0.0263 (16) | |
| C8 | 1.1907 (8) | 0.2626 (5) | 0.7913 (12) | 0.0301 (17) | |
| H8 | 1.2850 | 0.2445 | 0.8702 | 0.036* | |
| C9 | 1.1660 (8) | 0.3405 (4) | 0.7613 (12) | 0.0287 (17) | |
| H9 | 1.2423 | 0.3768 | 0.8210 | 0.034* | |
| C10 | 1.0283 (8) | 0.3669 (4) | 0.6426 (11) | 0.0269 (16) | |
| H10 | 1.0131 | 0.4213 | 0.6207 | 0.032* | |
| C11 | 0.9420 (8) | 0.2407 (4) | 0.5896 (10) | 0.0234 (15) | |
| C12 | 0.8212 (8) | 0.1902 (4) | 0.4927 (11) | 0.0224 (15) |
| Pd1 | 0.0171 (3) | 0.0198 (3) | 0.0258 (3) | −0.0001 (2) | 0.0050 (2) | 0.0001 (2) |
| Cl1 | 0.0285 (10) | 0.0198 (9) | 0.0422 (12) | 0.0034 (7) | 0.0070 (9) | 0.0016 (7) |
| Cl2 | 0.0178 (9) | 0.0379 (11) | 0.0457 (13) | 0.0017 (8) | −0.0007 (8) | 0.0059 (9) |
| N1 | 0.022 (3) | 0.016 (3) | 0.031 (3) | −0.003 (2) | 0.006 (3) | −0.004 (2) |
| N2 | 0.018 (3) | 0.014 (3) | 0.030 (3) | 0.000 (2) | 0.006 (3) | 0.000 (2) |
| C1 | 0.026 (4) | 0.037 (4) | 0.031 (4) | −0.005 (3) | 0.007 (4) | −0.005 (3) |
| C2 | 0.040 (5) | 0.029 (5) | 0.048 (5) | −0.017 (4) | 0.016 (4) | −0.015 (4) |
| C3 | 0.043 (5) | 0.011 (4) | 0.053 (6) | −0.005 (3) | 0.025 (5) | −0.004 (3) |
| C4 | 0.038 (5) | 0.022 (4) | 0.030 (4) | −0.005 (3) | 0.018 (4) | 0.000 (3) |
| C5 | 0.054 (6) | 0.021 (4) | 0.029 (4) | 0.005 (4) | 0.021 (4) | 0.006 (3) |
| C6 | 0.039 (5) | 0.026 (4) | 0.035 (5) | 0.013 (4) | 0.019 (4) | 0.008 (3) |
| C7 | 0.023 (4) | 0.026 (4) | 0.034 (4) | 0.011 (3) | 0.015 (3) | 0.007 (3) |
| C8 | 0.016 (4) | 0.039 (5) | 0.033 (5) | 0.003 (3) | 0.006 (3) | 0.005 (3) |
| C9 | 0.020 (4) | 0.032 (4) | 0.029 (4) | −0.001 (3) | 0.001 (3) | −0.003 (3) |
| C10 | 0.029 (4) | 0.021 (4) | 0.031 (4) | −0.003 (3) | 0.009 (3) | −0.004 (3) |
| C11 | 0.022 (4) | 0.026 (4) | 0.023 (4) | 0.000 (3) | 0.009 (3) | −0.003 (3) |
| C12 | 0.032 (4) | 0.013 (3) | 0.027 (4) | −0.003 (3) | 0.016 (3) | −0.005 (3) |
| Pd1—N2 | 2.035 (6) | C4—C12 | 1.412 (10) |
| Pd1—N1 | 2.036 (6) | C4—C5 | 1.441 (12) |
| Pd1—Cl2 | 2.283 (2) | C5—C6 | 1.335 (11) |
| Pd1—Cl1 | 2.2914 (19) | C5—H5 | 0.9500 |
| N1—C1 | 1.327 (9) | C6—C7 | 1.423 (11) |
| N1—C12 | 1.359 (9) | C6—H6 | 0.9500 |
| N2—C10 | 1.324 (9) | C7—C11 | 1.404 (10) |
| N2—C11 | 1.357 (9) | C7—C8 | 1.407 (10) |
| C1—C2 | 1.392 (12) | C8—C9 | 1.360 (10) |
| C1—H1 | 0.9500 | C8—H8 | 0.9500 |
| C2—C3 | 1.368 (12) | C9—C10 | 1.394 (11) |
| C2—H2 | 0.9500 | C9—H9 | 0.9500 |
| C3—C4 | 1.401 (11) | C10—H10 | 0.9500 |
| C3—H3 | 0.9500 | C11—C12 | 1.433 (10) |
| N2—Pd1—N1 | 81.5 (2) | C6—C5—C4 | 121.1 (7) |
| N2—Pd1—Cl2 | 175.11 (17) | C6—C5—H5 | 119.5 |
| N1—Pd1—Cl2 | 93.93 (17) | C4—C5—H5 | 119.5 |
| N2—Pd1—Cl1 | 93.20 (17) | C5—C6—C7 | 122.3 (7) |
| N1—Pd1—Cl1 | 174.64 (17) | C5—C6—H6 | 118.8 |
| Cl2—Pd1—Cl1 | 91.42 (7) | C7—C6—H6 | 118.8 |
| C1—N1—C12 | 118.4 (7) | C11—C7—C8 | 116.1 (7) |
| C1—N1—Pd1 | 129.4 (5) | C11—C7—C6 | 118.5 (7) |
| C12—N1—Pd1 | 112.2 (4) | C8—C7—C6 | 125.4 (7) |
| C10—N2—C11 | 118.4 (6) | C9—C8—C7 | 120.2 (7) |
| C10—N2—Pd1 | 129.1 (5) | C9—C8—H8 | 119.9 |
| C11—N2—Pd1 | 112.6 (5) | C7—C8—H8 | 119.9 |
| N1—C1—C2 | 122.2 (8) | C8—C9—C10 | 119.8 (7) |
| N1—C1—H1 | 118.9 | C8—C9—H9 | 120.1 |
| C2—C1—H1 | 118.9 | C10—C9—H9 | 120.1 |
| C3—C2—C1 | 120.0 (7) | N2—C10—C9 | 122.1 (7) |
| C3—C2—H2 | 120.0 | N2—C10—H10 | 119.0 |
| C1—C2—H2 | 120.0 | C9—C10—H10 | 119.0 |
| C2—C3—C4 | 119.6 (7) | N2—C11—C7 | 123.5 (7) |
| C2—C3—H3 | 120.2 | N2—C11—C12 | 116.6 (6) |
| C4—C3—H3 | 120.2 | C7—C11—C12 | 119.9 (7) |
| C3—C4—C12 | 116.8 (7) | N1—C12—C4 | 122.9 (6) |
| C3—C4—C5 | 125.1 (7) | N1—C12—C11 | 117.0 (6) |
| C12—C4—C5 | 118.1 (7) | C4—C12—C11 | 120.1 (7) |
| N2—Pd1—N1—C1 | −177.2 (7) | Pd1—N2—C10—C9 | 177.3 (5) |
| Cl2—Pd1—N1—C1 | 4.4 (7) | C8—C9—C10—N2 | 1.3 (12) |
| N2—Pd1—N1—C12 | 3.4 (5) | C10—N2—C11—C7 | 0.5 (11) |
| Cl2—Pd1—N1—C12 | −174.9 (5) | Pd1—N2—C11—C7 | −178.0 (6) |
| N1—Pd1—N2—C10 | 178.1 (7) | C10—N2—C11—C12 | −178.3 (6) |
| Cl1—Pd1—N2—C10 | −1.4 (6) | Pd1—N2—C11—C12 | 3.1 (8) |
| N1—Pd1—N2—C11 | −3.6 (5) | C8—C7—C11—N2 | −0.4 (11) |
| Cl1—Pd1—N2—C11 | 176.9 (5) | C6—C7—C11—N2 | −179.5 (7) |
| C12—N1—C1—C2 | 0.8 (11) | C8—C7—C11—C12 | 178.4 (7) |
| Pd1—N1—C1—C2 | −178.5 (6) | C6—C7—C11—C12 | −0.7 (10) |
| N1—C1—C2—C3 | 0.1 (13) | C1—N1—C12—C4 | −0.9 (10) |
| C1—C2—C3—C4 | −1.0 (12) | Pd1—N1—C12—C4 | 178.6 (5) |
| C2—C3—C4—C12 | 0.9 (11) | C1—N1—C12—C11 | 177.8 (6) |
| C2—C3—C4—C5 | −179.6 (8) | Pd1—N1—C12—C11 | −2.8 (8) |
| C3—C4—C5—C6 | 178.3 (7) | C3—C4—C12—N1 | 0.0 (11) |
| C12—C4—C5—C6 | −2.2 (11) | C5—C4—C12—N1 | −179.5 (7) |
| C4—C5—C6—C7 | 1.1 (12) | C3—C4—C12—C11 | −178.6 (7) |
| C5—C6—C7—C11 | 0.3 (11) | C5—C4—C12—C11 | 1.8 (10) |
| C5—C6—C7—C8 | −178.7 (8) | N2—C11—C12—N1 | −0.2 (10) |
| C11—C7—C8—C9 | 0.7 (11) | C7—C11—C12—N1 | −179.2 (6) |
| C6—C7—C8—C9 | 179.7 (7) | N2—C11—C12—C4 | 178.5 (6) |
| C7—C8—C9—C10 | −1.1 (12) | C7—C11—C12—C4 | −0.5 (10) |
| C11—N2—C10—C9 | −1.0 (11) |
| H··· | ||||
| C2—H2···Cl1i | 0.95 | 2.80 | 3.733 (11) | 169 |
| Pd1—N2 | 2.035 (6) |
| Pd1—N1 | 2.036 (6) |
| Pd1—Cl2 | 2.283 (2) |
| Pd1—Cl1 | 2.2914 (19) |
| N2—Pd1—N1 | 81.5 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯Cl1i | 0.95 | 2.80 | 3.733 (11) | 169 |
Symmetry code: (i) .