Literature DB >> 21579936

Dichlorido(1,10-phenanthroline-κN,N')palladium(II).

Kwang Ha1.   

Abstract

In the title complex, [PdCl(2)(C(12)H(8)N(2))], the Pd(2+) ion is four-coordinated in a slightly distorted square-planar environment by two N atoms of the chelating 1,10-phenanthroline ligand and two chloride ions. The nearly planar mol-ecules, with a maximum deviation of 0.120 (3) Å from the least-squares plane, are stacked in columns along the c axis with a Pd⋯Pd distance of 4.8340 (9) Å. In the column, π-π inter-actions between adjacent six-membered rings are present, the shortest centroid-centroid distance being 3.680 (4) Å. A weak C-H⋯Cl inter-action is observed between the columns.

Entities:  

Year:  2009        PMID: 21579936      PMCID: PMC2980155          DOI: 10.1107/S1600536809052313

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the syntheses of [PdX 2(phen)] (phen = 1,10-phenanthroline; X = Cl, Br, I or SCN), see: Cheng et al. (1977 ▶). For the crystal structure of yellow [PtCl2(phen)] which is isotypic to the title complex, see: Grzesiak & Matzger (2007 ▶). For the crystal structures of related Pd–bipy complexes, [PdX 2(bipy)] (bipy = 2,2′-bipyridine; X = Cl, Br or I), see: Maekawa et al. (1991 ▶); Smeets et al. (1997 ▶); Ha (2009 ▶).

Experimental

Crystal data

[PdCl2(C12H8N2)] M = 357.50 Monoclinic, a = 9.6170 (8) Å b = 17.1402 (14) Å c = 7.2529 (6) Å β = 109.314 (2)° V = 1128.26 (16) Å3 Z = 4 Mo Kα radiation μ = 2.09 mm−1 T = 200 K 0.36 × 0.06 × 0.04 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.769, T max = 0.920 8118 measured reflections 2767 independent reflections 1852 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.169 S = 1.10 2767 reflections 154 parameters H-atom parameters constrained Δρmax = 2.90 e Å−3 Δρmin = −1.29 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809052313/is2500sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052313/is2500Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C12H8N2)]F(000) = 696
Mr = 357.50Dx = 2.105 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2653 reflections
a = 9.6170 (8) Åθ = 2.4–28.2°
b = 17.1402 (14) ŵ = 2.09 mm1
c = 7.2529 (6) ÅT = 200 K
β = 109.314 (2)°Needle, yellow
V = 1128.26 (16) Å30.36 × 0.06 × 0.04 mm
Z = 4
Bruker SMART 1000 CCD diffractometer2767 independent reflections
Radiation source: fine-focus sealed tube1852 reflections with I > 2σ(I)
graphiteRint = 0.060
φ and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −12→12
Tmin = 0.769, Tmax = 0.920k = −22→19
8118 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.084P)2] where P = (Fo2 + 2Fc2)/3
2767 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 2.90 e Å3
0 restraintsΔρmin = −1.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.70739 (6)0.34324 (3)0.39119 (8)0.0214 (2)
Cl10.7453 (2)0.47533 (11)0.4189 (3)0.0313 (5)
Cl20.4658 (2)0.36052 (12)0.2078 (3)0.0366 (5)
N10.6941 (6)0.2247 (3)0.3805 (9)0.0235 (13)
N20.9182 (6)0.3184 (3)0.5594 (9)0.0211 (13)
C10.5819 (9)0.1794 (5)0.2838 (12)0.0319 (18)
H10.49310.20300.20360.038*
C20.5898 (10)0.0983 (5)0.2958 (13)0.039 (2)
H20.50730.06760.22440.046*
C30.7163 (9)0.0629 (4)0.4102 (12)0.033 (2)
H30.72140.00760.42020.040*
C40.8382 (9)0.1085 (4)0.5127 (11)0.0286 (17)
C50.9777 (10)0.0785 (4)0.6369 (12)0.0330 (19)
H50.99040.02380.65610.040*
C61.0895 (9)0.1263 (5)0.7254 (12)0.0318 (18)
H61.18050.10450.80440.038*
C71.0771 (8)0.2089 (4)0.7057 (11)0.0263 (16)
C81.1907 (8)0.2626 (5)0.7913 (12)0.0301 (17)
H81.28500.24450.87020.036*
C91.1660 (8)0.3405 (4)0.7613 (12)0.0287 (17)
H91.24230.37680.82100.034*
C101.0283 (8)0.3669 (4)0.6426 (11)0.0269 (16)
H101.01310.42130.62070.032*
C110.9420 (8)0.2407 (4)0.5896 (10)0.0234 (15)
C120.8212 (8)0.1902 (4)0.4927 (11)0.0224 (15)
U11U22U33U12U13U23
Pd10.0171 (3)0.0198 (3)0.0258 (3)−0.0001 (2)0.0050 (2)0.0001 (2)
Cl10.0285 (10)0.0198 (9)0.0422 (12)0.0034 (7)0.0070 (9)0.0016 (7)
Cl20.0178 (9)0.0379 (11)0.0457 (13)0.0017 (8)−0.0007 (8)0.0059 (9)
N10.022 (3)0.016 (3)0.031 (3)−0.003 (2)0.006 (3)−0.004 (2)
N20.018 (3)0.014 (3)0.030 (3)0.000 (2)0.006 (3)0.000 (2)
C10.026 (4)0.037 (4)0.031 (4)−0.005 (3)0.007 (4)−0.005 (3)
C20.040 (5)0.029 (5)0.048 (5)−0.017 (4)0.016 (4)−0.015 (4)
C30.043 (5)0.011 (4)0.053 (6)−0.005 (3)0.025 (5)−0.004 (3)
C40.038 (5)0.022 (4)0.030 (4)−0.005 (3)0.018 (4)0.000 (3)
C50.054 (6)0.021 (4)0.029 (4)0.005 (4)0.021 (4)0.006 (3)
C60.039 (5)0.026 (4)0.035 (5)0.013 (4)0.019 (4)0.008 (3)
C70.023 (4)0.026 (4)0.034 (4)0.011 (3)0.015 (3)0.007 (3)
C80.016 (4)0.039 (5)0.033 (5)0.003 (3)0.006 (3)0.005 (3)
C90.020 (4)0.032 (4)0.029 (4)−0.001 (3)0.001 (3)−0.003 (3)
C100.029 (4)0.021 (4)0.031 (4)−0.003 (3)0.009 (3)−0.004 (3)
C110.022 (4)0.026 (4)0.023 (4)0.000 (3)0.009 (3)−0.003 (3)
C120.032 (4)0.013 (3)0.027 (4)−0.003 (3)0.016 (3)−0.005 (3)
Pd1—N22.035 (6)C4—C121.412 (10)
Pd1—N12.036 (6)C4—C51.441 (12)
Pd1—Cl22.283 (2)C5—C61.335 (11)
Pd1—Cl12.2914 (19)C5—H50.9500
N1—C11.327 (9)C6—C71.423 (11)
N1—C121.359 (9)C6—H60.9500
N2—C101.324 (9)C7—C111.404 (10)
N2—C111.357 (9)C7—C81.407 (10)
C1—C21.392 (12)C8—C91.360 (10)
C1—H10.9500C8—H80.9500
C2—C31.368 (12)C9—C101.394 (11)
C2—H20.9500C9—H90.9500
C3—C41.401 (11)C10—H100.9500
C3—H30.9500C11—C121.433 (10)
N2—Pd1—N181.5 (2)C6—C5—C4121.1 (7)
N2—Pd1—Cl2175.11 (17)C6—C5—H5119.5
N1—Pd1—Cl293.93 (17)C4—C5—H5119.5
N2—Pd1—Cl193.20 (17)C5—C6—C7122.3 (7)
N1—Pd1—Cl1174.64 (17)C5—C6—H6118.8
Cl2—Pd1—Cl191.42 (7)C7—C6—H6118.8
C1—N1—C12118.4 (7)C11—C7—C8116.1 (7)
C1—N1—Pd1129.4 (5)C11—C7—C6118.5 (7)
C12—N1—Pd1112.2 (4)C8—C7—C6125.4 (7)
C10—N2—C11118.4 (6)C9—C8—C7120.2 (7)
C10—N2—Pd1129.1 (5)C9—C8—H8119.9
C11—N2—Pd1112.6 (5)C7—C8—H8119.9
N1—C1—C2122.2 (8)C8—C9—C10119.8 (7)
N1—C1—H1118.9C8—C9—H9120.1
C2—C1—H1118.9C10—C9—H9120.1
C3—C2—C1120.0 (7)N2—C10—C9122.1 (7)
C3—C2—H2120.0N2—C10—H10119.0
C1—C2—H2120.0C9—C10—H10119.0
C2—C3—C4119.6 (7)N2—C11—C7123.5 (7)
C2—C3—H3120.2N2—C11—C12116.6 (6)
C4—C3—H3120.2C7—C11—C12119.9 (7)
C3—C4—C12116.8 (7)N1—C12—C4122.9 (6)
C3—C4—C5125.1 (7)N1—C12—C11117.0 (6)
C12—C4—C5118.1 (7)C4—C12—C11120.1 (7)
N2—Pd1—N1—C1−177.2 (7)Pd1—N2—C10—C9177.3 (5)
Cl2—Pd1—N1—C14.4 (7)C8—C9—C10—N21.3 (12)
N2—Pd1—N1—C123.4 (5)C10—N2—C11—C70.5 (11)
Cl2—Pd1—N1—C12−174.9 (5)Pd1—N2—C11—C7−178.0 (6)
N1—Pd1—N2—C10178.1 (7)C10—N2—C11—C12−178.3 (6)
Cl1—Pd1—N2—C10−1.4 (6)Pd1—N2—C11—C123.1 (8)
N1—Pd1—N2—C11−3.6 (5)C8—C7—C11—N2−0.4 (11)
Cl1—Pd1—N2—C11176.9 (5)C6—C7—C11—N2−179.5 (7)
C12—N1—C1—C20.8 (11)C8—C7—C11—C12178.4 (7)
Pd1—N1—C1—C2−178.5 (6)C6—C7—C11—C12−0.7 (10)
N1—C1—C2—C30.1 (13)C1—N1—C12—C4−0.9 (10)
C1—C2—C3—C4−1.0 (12)Pd1—N1—C12—C4178.6 (5)
C2—C3—C4—C120.9 (11)C1—N1—C12—C11177.8 (6)
C2—C3—C4—C5−179.6 (8)Pd1—N1—C12—C11−2.8 (8)
C3—C4—C5—C6178.3 (7)C3—C4—C12—N10.0 (11)
C12—C4—C5—C6−2.2 (11)C5—C4—C12—N1−179.5 (7)
C4—C5—C6—C71.1 (12)C3—C4—C12—C11−178.6 (7)
C5—C6—C7—C110.3 (11)C5—C4—C12—C111.8 (10)
C5—C6—C7—C8−178.7 (8)N2—C11—C12—N1−0.2 (10)
C11—C7—C8—C90.7 (11)C7—C11—C12—N1−179.2 (6)
C6—C7—C8—C9179.7 (7)N2—C11—C12—C4178.5 (6)
C7—C8—C9—C10−1.1 (12)C7—C11—C12—C4−0.5 (10)
C11—N2—C10—C9−1.0 (11)
D—H···AD—HH···AD···AD—H···A
C2—H2···Cl1i0.952.803.733 (11)169
Pd1—N22.035 (6)
Pd1—N12.036 (6)
Pd1—Cl22.283 (2)
Pd1—Cl12.2914 (19)
N2—Pd1—N181.5 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯Cl1i0.952.803.733 (11)169

Symmetry code: (i) .

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