Literature DB >> 21578060

(2,2'-Bipyridine-κN,N')dibromido-palladium(II) dichloro-methane solvate.

Nam-Ho Kim1, Kwang Ha.   

Abstract

In the title compound, [PdBr(2)(C(10)H(8)N(2))]·CH(2)Cl(2), the Pd(2+) ion is four-coordinated in a slightly distorted square-planar environment by two N atoms of the chelating 2,2'-bipyridine ligand and two bromide ions. The compound displays intra-molecular C-H⋯Br hydrogen bonds and pairs of complex mol-ecules are assembled by inter-molecular C-H⋯Br hydrogen bonds. These pairs are connected by additional C-H⋯Br hydrogen bonds, forming a layer structure extending parallel to (011). Inter-molecular π-π inter-actions between the pyridine rings of the ligand are also present, the shortest centroid-centroid distance being 4.090 (9) Å.

Entities:  

Year:  2009        PMID: 21578060      PMCID: PMC2971059          DOI: 10.1107/S1600536809039701

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of [PdX 2(bipy)] (X = Cl or Br), see: Maekawa et al. (1991 ▶); Smeets et al. (1997 ▶). For the crystal structure of [PdCl2(bipy)CH2Cl2 which is isotypic to the title compound, see: Vicente et al. (1997 ▶); Kim et al. (2009a ▶). For related Pt(II, IV)-bipyridine complexes, see: Osborn & Rogers (1974 ▶); Hambley (1986 ▶); Sartori et al. (2005 ▶); Momeni et al. (2007 ▶); Kim et al. (2009b ▶).

Experimental

Crystal data

[PdBr2(C10H8N2)]·CH2Cl2 M = 507.33 Triclinic, a = 8.9323 (10) Å b = 9.3035 (10) Å c = 10.0113 (11) Å α = 72.882 (2)° β = 67.292 (2)° γ = 80.995 (2)° V = 732.60 (14) Å3 Z = 2 Mo Kα radiation μ = 7.07 mm−1 T = 200 K 0.22 × 0.15 × 0.11 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.707, T max = 1.000 5486 measured reflections 3574 independent reflections 2195 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.188 S = 1.14 3574 reflections 163 parameters H-atom parameters constrained Δρmax = 2.13 e Å−3 Δρmin = −3.43 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809039701/wm2260sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039701/wm2260Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdBr2(C10H8N2)]·CH2Cl2Z = 2
Mr = 507.33F(000) = 480
Triclinic, P1Dx = 2.300 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9323 (10) ÅCell parameters from 1623 reflections
b = 9.3035 (10) Åθ = 2.3–26.7°
c = 10.0113 (11) ŵ = 7.07 mm1
α = 72.882 (2)°T = 200 K
β = 67.292 (2)°Block, dark orange
γ = 80.995 (2)°0.22 × 0.15 × 0.11 mm
V = 732.60 (14) Å3
Bruker SMART 1000 CCD diffractometer3574 independent reflections
Radiation source: fine-focus sealed tube2195 reflections with I > 2σ(I)
graphiteRint = 0.038
φ and ω scansθmax = 28.3°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −11→11
Tmin = 0.707, Tmax = 1.000k = −12→12
5486 measured reflectionsl = −13→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.188H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + 21.2252P] where P = (Fo2 + 2Fc2)/3
3574 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 2.13 e Å3
0 restraintsΔρmin = −3.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.17533 (13)0.20690 (12)0.28502 (12)0.0321 (3)
Br10.1261 (2)0.47367 (16)0.19026 (18)0.0424 (4)
Br20.3633 (2)0.26600 (18)0.3779 (2)0.0491 (4)
N10.2025 (13)−0.0210 (11)0.3616 (12)0.028 (2)
N20.0139 (13)0.1409 (13)0.2168 (14)0.036 (3)
C10.3048 (18)−0.0927 (14)0.4310 (15)0.036 (3)
H10.3742−0.03630.44620.043*
C20.3107 (19)−0.2513 (16)0.4819 (17)0.042 (4)
H20.3822−0.30210.53250.051*
C30.2123 (18)−0.3299 (16)0.4572 (17)0.043 (4)
H30.2171−0.43690.48700.052*
C40.1059 (19)−0.2536 (15)0.3888 (16)0.039 (3)
H40.0338−0.30900.37600.047*
C50.1007 (15)−0.0985 (15)0.3378 (15)0.033 (3)
C6−0.0030 (16)−0.0117 (16)0.2607 (16)0.036 (3)
C7−0.1125 (18)−0.0734 (18)0.2308 (17)0.043 (4)
H7−0.1228−0.17930.25990.052*
C8−0.210 (2)0.0237 (19)0.1559 (18)0.050 (4)
H8−0.2888−0.01530.13610.060*
C9−0.188 (2)0.1730 (18)0.1129 (18)0.049 (4)
H9−0.25100.23960.06030.059*
C10−0.0763 (18)0.2292 (19)0.1449 (17)0.043 (4)
H10−0.06360.33480.11430.051*
C110.5407 (19)0.6259 (17)0.1286 (19)0.048 (4)
H11A0.44060.57430.20010.058*
H11B0.58750.57850.04370.058*
Cl10.4918 (5)0.8180 (5)0.0621 (5)0.0515 (10)
Cl20.6808 (6)0.6039 (5)0.2181 (6)0.0662 (13)
U11U22U33U12U13U23
Pd10.0322 (6)0.0287 (5)0.0372 (6)−0.0048 (4)−0.0124 (5)−0.0096 (4)
Br10.0503 (9)0.0281 (7)0.0507 (10)−0.0036 (6)−0.0195 (7)−0.0104 (6)
Br20.0533 (10)0.0378 (8)0.0684 (12)−0.0122 (7)−0.0345 (9)−0.0089 (8)
N10.032 (6)0.015 (5)0.033 (6)−0.001 (4)−0.017 (5)0.004 (4)
N20.022 (6)0.040 (7)0.053 (8)−0.006 (5)−0.013 (5)−0.018 (6)
C10.051 (9)0.015 (6)0.037 (8)−0.003 (6)−0.018 (7)0.004 (5)
C20.047 (9)0.027 (7)0.052 (10)0.004 (6)−0.024 (8)−0.003 (6)
C30.045 (9)0.024 (7)0.042 (9)−0.001 (6)0.002 (7)−0.005 (6)
C40.055 (9)0.024 (7)0.036 (8)−0.003 (6)−0.021 (7)0.001 (6)
C50.020 (6)0.041 (8)0.040 (8)−0.006 (6)−0.001 (5)−0.024 (6)
C60.027 (7)0.040 (8)0.041 (8)−0.010 (6)−0.009 (6)−0.011 (6)
C70.041 (9)0.046 (9)0.043 (9)−0.011 (7)−0.016 (7)−0.006 (7)
C80.053 (10)0.053 (10)0.055 (11)−0.008 (8)−0.035 (9)−0.007 (8)
C90.051 (10)0.048 (9)0.054 (10)−0.010 (8)−0.034 (8)0.006 (8)
C100.045 (9)0.059 (10)0.045 (9)−0.007 (7)−0.037 (7)−0.014 (7)
C110.041 (9)0.045 (9)0.055 (10)−0.016 (7)−0.004 (8)−0.018 (8)
Cl10.055 (2)0.045 (2)0.055 (3)−0.0045 (18)−0.026 (2)−0.0050 (18)
Cl20.069 (3)0.052 (3)0.091 (4)0.003 (2)−0.052 (3)−0.008 (2)
Pd1—N12.042 (9)C4—H40.9500
Pd1—N22.051 (11)C5—C61.43 (2)
Pd1—Br22.4044 (19)C6—C71.371 (19)
Pd1—Br12.4182 (18)C7—C81.41 (2)
N1—C11.338 (17)C7—H70.9500
N1—C51.370 (15)C8—C91.35 (2)
N2—C101.317 (18)C8—H80.9500
N2—C61.371 (17)C9—C101.373 (19)
C1—C21.412 (17)C9—H90.9500
C1—H10.9500C10—H100.9500
C2—C31.36 (2)C11—Cl21.757 (17)
C2—H20.9500C11—Cl11.763 (16)
C3—C41.37 (2)C11—H11A0.9900
C3—H30.9500C11—H11B0.9900
C4—C51.382 (18)
N1—Pd1—N280.6 (5)N1—C5—C4117.9 (13)
N1—Pd1—Br295.3 (3)N1—C5—C6117.2 (12)
N2—Pd1—Br2175.7 (4)C4—C5—C6124.9 (12)
N1—Pd1—Br1175.7 (3)C7—C6—N2120.9 (14)
N2—Pd1—Br195.1 (3)C7—C6—C5123.7 (13)
Br2—Pd1—Br188.90 (6)N2—C6—C5115.4 (12)
C1—N1—C5121.3 (11)C6—C7—C8118.5 (15)
C1—N1—Pd1125.6 (9)C6—C7—H7120.7
C5—N1—Pd1113.0 (9)C8—C7—H7120.7
C10—N2—C6119.5 (12)C9—C8—C7118.9 (15)
C10—N2—Pd1126.8 (10)C9—C8—H8120.6
C6—N2—Pd1113.6 (10)C7—C8—H8120.6
N1—C1—C2120.6 (13)C8—C9—C10120.3 (15)
N1—C1—H1119.7C8—C9—H9119.8
C2—C1—H1119.7C10—C9—H9119.8
C3—C2—C1118.8 (14)N2—C10—C9121.9 (15)
C3—C2—H2120.6N2—C10—H10119.1
C1—C2—H2120.6C9—C10—H10119.1
C2—C3—C4119.4 (13)Cl2—C11—Cl1110.9 (8)
C2—C3—H3120.3Cl2—C11—H11A109.5
C4—C3—H3120.3Cl1—C11—H11A109.5
C3—C4—C5121.9 (14)Cl2—C11—H11B109.5
C3—C4—H4119.1Cl1—C11—H11B109.5
C5—C4—H4119.1H11A—C11—H11B108.0
N2—Pd1—N1—C1178.3 (12)C3—C4—C5—N1−2(2)
Br2—Pd1—N1—C1−3.1 (11)C3—C4—C5—C6177.7 (14)
N2—Pd1—N1—C5−2.9 (9)C10—N2—C6—C70(2)
Br2—Pd1—N1—C5175.6 (8)Pd1—N2—C6—C7176.6 (11)
N1—Pd1—N2—C10179.9 (13)C10—N2—C6—C5179.8 (13)
Br1—Pd1—N2—C100.6 (13)Pd1—N2—C6—C5−3.5 (15)
N1—Pd1—N2—C63.5 (9)N1—C5—C6—C7−179.1 (13)
Br1—Pd1—N2—C6−175.8 (9)C4—C5—C6—C71(2)
C5—N1—C1—C20(2)N1—C5—C6—N21.1 (18)
Pd1—N1—C1—C2178.7 (10)C4—C5—C6—N2−178.6 (13)
N1—C1—C2—C31(2)N2—C6—C7—C8−1(2)
C1—C2—C3—C4−2(2)C5—C6—C7—C8179.1 (14)
C2—C3—C4—C53(2)C6—C7—C8—C92(2)
C1—N1—C5—C40.4 (19)C7—C8—C9—C10−2(3)
Pd1—N1—C5—C4−178.4 (10)C6—N2—C10—C90(2)
C1—N1—C5—C6−179.2 (12)Pd1—N2—C10—C9−175.8 (12)
Pd1—N1—C5—C62.0 (15)C8—C9—C10—N20(3)
D—H···AD—HH···AD···AD—H···A
C1—H1···Br20.952.693.313 (13)124
C2—H2···Br2i0.952.843.659 (16)145
C10—H10···Br10.952.723.343 (14)124
C11—H11A···Br20.992.923.693 (15)135
C11—H11B···Br1ii0.992.813.668 (16)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯Br20.952.693.313 (13)124
C2—H2⋯Br2i0.952.843.659 (16)145
C10—H10⋯Br10.952.723.343 (14)124
C11—H11A⋯Br20.992.923.693 (15)135
C11—H11B⋯Br1ii0.992.813.668 (16)145

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis(2,2'-bipyridine-κN,N')dichlorido-platinum(IV) dichloride monohydrate.

Authors:  Nam-Ho Kim; In-Chul Hwang; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-14

3.  Redetermination of (2,2'-bipyridine-κN,N')dichlorido-palladium(II) dichloro-methane solvate.

Authors:  Nam-Ho Kim; In-Chul Hwang; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-07

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  (2,2'-Bipyridine-κN,N')diiodido-palladium(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14
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