Literature DB >> 21582986

Redetermination of (2,2'-bipyridine-κN,N')dichlorido-palladium(II) dichloro-methane solvate.

Nam-Ho Kim, In-Chul Hwang, Kwang Ha.   

Abstract

In the title compound, [PdCl(2)(C(10)H(8)N(2))]·CH(2)Cl(2), the Pd(2+) ion is four-coordinated in a slightly distorted square-planar environment by two N atoms of the 2,2'-bipyridine (bipy) ligand and two chloride ions. The compound displays intra-molecular C-H⋯Cl hydrogen bonds and pairs of complex mol-ecules are connected by inter-molecular C-H⋯Cl hydrogen bonds. Inter-molecular π-π inter-actions are present between the pyridine rings of the ligand, the shortest centroid-centroid distance being 4.096 (3) Å. As a result of the electronic nature of the chelate ring, it is possible to create π-π inter-actions to its symmetry-related counterpart [3.720 (2) Å] and also with a pyridine ring [3.570 (3) Å] of the bipy unit. The present structure is a redetermination of a previous structure [Vicente et al. (1997 ▶). Private communication (refcode PYCXMN02). CCDC, Cambridge, England]. In the new structure refinement all H atoms were located in a difference Fourier synthesis. Their coordinates were refined freely, together with isotropic displacement parameters.

Entities:  

Year:  2009        PMID: 21582986      PMCID: PMC2969654          DOI: 10.1107/S1600536809016262

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal structures of [PdX 2(bipy)] (X = Cl or Br), see: Maekawa et al. (1991 ▶); Vicente et al. (1997 ▶); Smeets et al. (1997 ▶). For related Pt(II, IV)–bipyridine complexes, see: Osborn & Rogers (1974 ▶); Hambley (1986 ▶); Sartori et al. (2005 ▶); Momeni et al. (2007 ▶); Kim et al. (2009 ▶).

Experimental

Crystal data

[PdCl2(C10H8N2)]·CH2Cl2 M = 418.41 Triclinic, a = 8.7913 (10) Å b = 9.1115 (11) Å c = 10.1846 (12) Å α = 72.481 (2)° β = 66.983 (2)° γ = 81.429 (2)° V = 715.58 (15) Å3 Z = 2 Mo Kα radiation μ = 2.03 mm−1 T = 293 K 0.20 × 0.08 × 0.08 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.623, T max = 0.850 4221 measured reflections 2862 independent reflections 2298 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.097 S = 1.05 2862 reflections 203 parameters All H-atom parameters refined Δρmax = 0.56 e Å−3 Δρmin = −0.69 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809016262/kp2220sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809016262/kp2220Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C10H8N2)]·CH2Cl2Z = 2
Mr = 418.41F(000) = 408
Triclinic, P1Dx = 1.942 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.7913 (10) ÅCell parameters from 983 reflections
b = 9.1115 (11) Åθ = 2.3–21.7°
c = 10.1846 (12) ŵ = 2.03 mm1
α = 72.481 (2)°T = 293 K
β = 66.983 (2)°Stick, yellow
γ = 81.429 (2)°0.20 × 0.08 × 0.08 mm
V = 715.58 (15) Å3
Bruker SMART 1000 CCD diffractometer2862 independent reflections
Radiation source: fine-focus sealed tube2298 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 26.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.623, Tmax = 0.850k = −7→11
4221 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097All H-atom parameters refined
S = 1.05w = 1/[σ2(Fo2) + (0.0352P)2 + 0.5604P] where P = (Fo2 + 2Fc2)/3
2862 reflections(Δ/σ)max < 0.001
203 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.69 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.32112 (5)0.28572 (4)0.21130 (4)0.04479 (15)
Cl10.36850 (18)0.02764 (15)0.30403 (16)0.0612 (4)
Cl20.1458 (2)0.22805 (17)0.11857 (19)0.0720 (5)
N10.2916 (5)0.5169 (5)0.1348 (4)0.0454 (10)
N20.4786 (5)0.3551 (5)0.2803 (4)0.0446 (10)
C10.1884 (7)0.5895 (7)0.0665 (6)0.0545 (14)
H10.126 (6)0.526 (6)0.052 (5)0.058 (16)*
C20.1803 (8)0.7475 (7)0.0175 (7)0.0610 (15)
H20.101 (7)0.800 (6)−0.020 (6)0.063 (17)*
C30.2768 (8)0.8325 (7)0.0413 (7)0.0620 (16)
H30.273 (6)0.930 (6)0.018 (5)0.043 (14)*
C40.3831 (7)0.7585 (6)0.1120 (6)0.0515 (13)
H40.451 (6)0.809 (6)0.128 (5)0.046 (14)*
C50.3887 (6)0.6010 (6)0.1590 (5)0.0417 (11)
C60.4959 (6)0.5099 (6)0.2384 (5)0.0466 (12)
C70.6069 (8)0.5739 (7)0.2675 (7)0.0644 (16)
H70.623 (7)0.683 (7)0.236 (6)0.081 (19)*
C80.7003 (9)0.4784 (8)0.3427 (8)0.077 (2)
H80.775 (8)0.512 (8)0.355 (7)0.09 (2)*
C90.6833 (8)0.3223 (8)0.3858 (8)0.0717 (18)
H90.734 (6)0.255 (6)0.442 (5)0.049 (15)*
C100.5692 (7)0.2645 (7)0.3546 (7)0.0579 (15)
H100.562 (6)0.166 (6)0.376 (5)0.043 (14)*
C110.0507 (9)0.1175 (7)0.6220 (8)0.0614 (16)
H11A−0.043 (7)0.071 (6)0.685 (6)0.062 (17)*
H11B0.115 (7)0.087 (7)0.529 (7)0.09 (2)*
Cl3−0.0049 (2)0.31218 (19)0.55636 (18)0.0740 (5)
Cl40.1895 (2)0.1016 (2)0.7099 (2)0.0887 (6)
U11U22U33U12U13U23
Pd10.0465 (2)0.0387 (2)0.0512 (3)−0.00670 (17)−0.01825 (18)−0.01196 (18)
Cl10.0744 (9)0.0386 (7)0.0735 (9)−0.0059 (7)−0.0309 (8)−0.0121 (7)
Cl20.0836 (11)0.0561 (9)0.0965 (12)−0.0203 (8)−0.0543 (9)−0.0117 (8)
N10.045 (2)0.044 (2)0.048 (2)−0.005 (2)−0.017 (2)−0.0118 (19)
N20.049 (2)0.039 (2)0.050 (2)−0.0036 (19)−0.021 (2)−0.0121 (19)
C10.052 (3)0.054 (3)0.062 (3)−0.002 (3)−0.028 (3)−0.012 (3)
C20.063 (4)0.050 (4)0.068 (4)0.008 (3)−0.029 (3)−0.009 (3)
C30.072 (4)0.039 (3)0.074 (4)−0.002 (3)−0.025 (3)−0.016 (3)
C40.057 (3)0.039 (3)0.063 (3)−0.005 (3)−0.025 (3)−0.016 (3)
C50.041 (3)0.039 (3)0.044 (3)−0.004 (2)−0.010 (2)−0.016 (2)
C60.046 (3)0.044 (3)0.045 (3)−0.004 (2)−0.012 (2)−0.011 (2)
C70.080 (4)0.052 (4)0.078 (4)−0.015 (3)−0.045 (4)−0.013 (3)
C80.084 (5)0.070 (5)0.097 (5)−0.016 (4)−0.058 (4)−0.009 (4)
C90.074 (4)0.063 (4)0.092 (5)−0.004 (3)−0.054 (4)−0.009 (4)
C100.065 (4)0.045 (3)0.067 (4)−0.002 (3)−0.032 (3)−0.008 (3)
C110.065 (4)0.052 (4)0.072 (4)−0.009 (3)−0.026 (3)−0.019 (3)
Cl30.0761 (10)0.0652 (10)0.0759 (10)0.0022 (8)−0.0354 (9)−0.0044 (8)
Cl40.0906 (12)0.0701 (11)0.1211 (15)0.0040 (9)−0.0663 (12)−0.0139 (10)
Pd1—N22.025 (4)C4—H40.90 (5)
Pd1—N12.029 (4)C5—C61.480 (7)
Pd1—Cl22.2853 (14)C6—C71.371 (7)
Pd1—Cl12.2964 (14)C7—C81.377 (9)
N1—C11.335 (6)C7—H70.96 (6)
N1—C51.360 (6)C8—C91.369 (9)
N2—C101.338 (7)C8—H80.83 (6)
N2—C61.359 (6)C9—C101.375 (8)
C1—C21.375 (8)C9—H90.90 (5)
C1—H10.93 (5)C10—H100.86 (5)
C2—C31.360 (8)C11—Cl41.743 (6)
C2—H20.93 (5)C11—Cl31.765 (6)
C3—C41.376 (8)C11—H11A0.90 (5)
C3—H30.85 (5)C11—H11B0.99 (6)
C4—C51.369 (7)
N2—Pd1—N181.04 (16)N1—C5—C4120.6 (5)
N2—Pd1—Cl2174.97 (12)N1—C5—C6115.2 (4)
N1—Pd1—Cl294.27 (12)C4—C5—C6124.2 (5)
N2—Pd1—Cl194.74 (12)N2—C6—C7121.4 (5)
N1—Pd1—Cl1175.78 (12)N2—C6—C5115.0 (4)
Cl2—Pd1—Cl189.94 (5)C7—C6—C5123.6 (5)
C1—N1—C5119.3 (5)C6—C7—C8118.8 (6)
C1—N1—Pd1126.5 (4)C6—C7—H7122 (4)
C5—N1—Pd1114.2 (3)C8—C7—H7119 (4)
C10—N2—C6118.9 (4)C9—C8—C7120.2 (6)
C10—N2—Pd1126.6 (4)C9—C8—H8118 (5)
C6—N2—Pd1114.4 (3)C7—C8—H8121 (5)
N1—C1—C2121.4 (6)C8—C9—C10118.5 (6)
N1—C1—H1116 (3)C8—C9—H9124 (3)
C2—C1—H1123 (3)C10—C9—H9117 (3)
C3—C2—C1119.7 (6)N2—C10—C9122.2 (6)
C3—C2—H2118 (4)N2—C10—H10118 (3)
C1—C2—H2122 (4)C9—C10—H10119 (3)
C2—C3—C4119.2 (6)Cl4—C11—Cl3111.0 (3)
C2—C3—H3124 (3)Cl4—C11—H11A111 (4)
C4—C3—H3117 (3)Cl3—C11—H11A106 (4)
C5—C4—C3119.8 (5)Cl4—C11—H11B106 (3)
C5—C4—H4118 (3)Cl3—C11—H11B103 (4)
C3—C4—H4123 (3)H11A—C11—H11B120 (5)
N2—Pd1—N1—C1−177.3 (4)C3—C4—C5—N10.8 (8)
Cl2—Pd1—N1—C14.6 (4)C3—C4—C5—C6−178.8 (5)
N2—Pd1—N1—C52.4 (3)C10—N2—C6—C71.7 (8)
Cl2—Pd1—N1—C5−175.7 (3)Pd1—N2—C6—C7−175.3 (4)
N1—Pd1—N2—C10179.8 (5)C10—N2—C6—C5−179.1 (4)
Cl1—Pd1—N2—C10−0.3 (5)Pd1—N2—C6—C54.0 (5)
N1—Pd1—N2—C6−3.5 (3)N1—C5—C6—N2−2.0 (6)
Cl1—Pd1—N2—C6176.4 (3)C4—C5—C6—N2177.6 (5)
C5—N1—C1—C21.2 (8)N1—C5—C6—C7177.3 (5)
Pd1—N1—C1—C2−179.2 (4)C4—C5—C6—C7−3.1 (8)
N1—C1—C2—C3−1.3 (9)N2—C6—C7—C8−1.0 (9)
C1—C2—C3—C41.1 (9)C5—C6—C7—C8179.8 (6)
C2—C3—C4—C5−0.8 (9)C6—C7—C8—C90.7 (11)
C1—N1—C5—C4−0.9 (7)C7—C8—C9—C10−1.2 (11)
Pd1—N1—C5—C4179.4 (4)C6—N2—C10—C9−2.2 (9)
C1—N1—C5—C6178.7 (4)Pd1—N2—C10—C9174.4 (5)
Pd1—N1—C5—C6−1.0 (5)C8—C9—C10—N21.9 (10)
D—H···AD—HH···AD···AD—H···A
C1—H1···Cl20.93 (5)2.59 (5)3.230 (6)126 (4)
C2—H2···Cl2i0.93 (5)2.79 (5)3.595 (7)145 (4)
C10—H10···Cl10.86 (5)2.68 (5)3.248 (6)125 (4)
C11—H11B···Cl10.99 (6)2.63 (6)3.578 (8)161 (5)
Table 1

Selected bond lengths (Å)

Pd1—N22.025 (4)
Pd1—N12.029 (4)
Pd1—Cl22.2853 (14)
Pd1—Cl12.2964 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯Cl20.93 (5)2.59 (5)3.230 (6)126 (4)
C2—H2⋯Cl2i0.93 (5)2.79 (5)3.595 (7)145 (4)
C10—H10⋯Cl10.86 (5)2.68 (5)3.248 (6)125 (4)
C11—H11B⋯Cl10.99 (6)2.63 (6)3.578 (8)161 (5)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis(2,2'-bipyridine-κN,N')dichlorido-platinum(IV) dichloride monohydrate.

Authors:  Nam-Ho Kim; In-Chul Hwang; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-14

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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  3 in total
  6 in total

1.  (2,2'-Bipyridine-κN,N')dibromido-palladium(II) dichloro-methane solvate.

Authors:  Nam-Ho Kim; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

2.  Tetra-aqua-(5,5'-dimethyl-2,2'-bipyridine-κN,N')zinc(II) sulfate.

Authors:  Qing-Lan Zhao; Hui-Feng Bai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04

3.  Aqua-bis(benzoato-κO)(5,5'-dimethyl-2,2'-bipyridine-κN,N')copper(II).

Authors:  Xi-Yan Dong; Xiaojie Xu; Lei Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

4.  (2,2'-Bipyridine-κN,N')diiodido-palladium(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

Review 5.  The Early Years of 2,2'-Bipyridine-A Ligand in Its Own Lifetime.

Authors:  Edwin C Constable; Catherine E Housecroft
Journal:  Molecules       Date:  2019-10-31       Impact factor: 4.411

6.  (2,2'-Bi-pyridine-κ(2) N,N')di-chloridopalladium(II) 1,4-dioxane hemisolvate.

Authors:  Ricardo Alfredo Gutiérrez Márquez; Carmela Crisóstomo-Lucas; David Morales-Morales; Simón Hernández-Ortega
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-17
  6 in total

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