| Literature DB >> 21582986 |
Nam-Ho Kim, In-Chul Hwang, Kwang Ha.
Abstract
In the title compound, [PdCl(2)(C(10)H(8)N(2))]·CH(2)Cl(2), the Pd(2+) ion is four-coordinated in a slightly distorted square-planar environment by two N atoms of the 2,2'-bipyridine (bipy) ligand and two chloride ions. The compound displays intra-molecular C-H⋯Cl hydrogen bonds and pairs of complex mol-ecules are connected by inter-molecular C-H⋯Cl hydrogen bonds. Inter-molecular π-π inter-actions are present between the pyridine rings of the ligand, the shortest centroid-centroid distance being 4.096 (3) Å. As a result of the electronic nature of the chelate ring, it is possible to create π-π inter-actions to its symmetry-related counterpart [3.720 (2) Å] and also with a pyridine ring [3.570 (3) Å] of the bipy unit. The present structure is a redetermination of a previous structure [Vicente et al. (1997 ▶). Private communication (refcode PYCXMN02). CCDC, Cambridge, England]. In the new structure refinement all H atoms were located in a difference Fourier synthesis. Their coordinates were refined freely, together with isotropic displacement parameters.Entities:
Year: 2009 PMID: 21582986 PMCID: PMC2969654 DOI: 10.1107/S1600536809016262
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl2(C10H8N2)]·CH2Cl2 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 983 reflections | |
| θ = 2.3–21.7° | |
| µ = 2.03 mm−1 | |
| α = 72.481 (2)° | |
| β = 66.983 (2)° | Stick, yellow |
| γ = 81.429 (2)° | 0.20 × 0.08 × 0.08 mm |
| Bruker SMART 1000 CCD diffractometer | 2862 independent reflections |
| Radiation source: fine-focus sealed tube | 2298 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.4°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 4221 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 2862 reflections | (Δ/σ)max < 0.001 |
| 203 parameters | Δρmax = 0.56 e Å−3 |
| 0 restraints | Δρmin = −0.69 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.32112 (5) | 0.28572 (4) | 0.21130 (4) | 0.04479 (15) | |
| Cl1 | 0.36850 (18) | 0.02764 (15) | 0.30403 (16) | 0.0612 (4) | |
| Cl2 | 0.1458 (2) | 0.22805 (17) | 0.11857 (19) | 0.0720 (5) | |
| N1 | 0.2916 (5) | 0.5169 (5) | 0.1348 (4) | 0.0454 (10) | |
| N2 | 0.4786 (5) | 0.3551 (5) | 0.2803 (4) | 0.0446 (10) | |
| C1 | 0.1884 (7) | 0.5895 (7) | 0.0665 (6) | 0.0545 (14) | |
| H1 | 0.126 (6) | 0.526 (6) | 0.052 (5) | 0.058 (16)* | |
| C2 | 0.1803 (8) | 0.7475 (7) | 0.0175 (7) | 0.0610 (15) | |
| H2 | 0.101 (7) | 0.800 (6) | −0.020 (6) | 0.063 (17)* | |
| C3 | 0.2768 (8) | 0.8325 (7) | 0.0413 (7) | 0.0620 (16) | |
| H3 | 0.273 (6) | 0.930 (6) | 0.018 (5) | 0.043 (14)* | |
| C4 | 0.3831 (7) | 0.7585 (6) | 0.1120 (6) | 0.0515 (13) | |
| H4 | 0.451 (6) | 0.809 (6) | 0.128 (5) | 0.046 (14)* | |
| C5 | 0.3887 (6) | 0.6010 (6) | 0.1590 (5) | 0.0417 (11) | |
| C6 | 0.4959 (6) | 0.5099 (6) | 0.2384 (5) | 0.0466 (12) | |
| C7 | 0.6069 (8) | 0.5739 (7) | 0.2675 (7) | 0.0644 (16) | |
| H7 | 0.623 (7) | 0.683 (7) | 0.236 (6) | 0.081 (19)* | |
| C8 | 0.7003 (9) | 0.4784 (8) | 0.3427 (8) | 0.077 (2) | |
| H8 | 0.775 (8) | 0.512 (8) | 0.355 (7) | 0.09 (2)* | |
| C9 | 0.6833 (8) | 0.3223 (8) | 0.3858 (8) | 0.0717 (18) | |
| H9 | 0.734 (6) | 0.255 (6) | 0.442 (5) | 0.049 (15)* | |
| C10 | 0.5692 (7) | 0.2645 (7) | 0.3546 (7) | 0.0579 (15) | |
| H10 | 0.562 (6) | 0.166 (6) | 0.376 (5) | 0.043 (14)* | |
| C11 | 0.0507 (9) | 0.1175 (7) | 0.6220 (8) | 0.0614 (16) | |
| H11A | −0.043 (7) | 0.071 (6) | 0.685 (6) | 0.062 (17)* | |
| H11B | 0.115 (7) | 0.087 (7) | 0.529 (7) | 0.09 (2)* | |
| Cl3 | −0.0049 (2) | 0.31218 (19) | 0.55636 (18) | 0.0740 (5) | |
| Cl4 | 0.1895 (2) | 0.1016 (2) | 0.7099 (2) | 0.0887 (6) |
| Pd1 | 0.0465 (2) | 0.0387 (2) | 0.0512 (3) | −0.00670 (17) | −0.01825 (18) | −0.01196 (18) |
| Cl1 | 0.0744 (9) | 0.0386 (7) | 0.0735 (9) | −0.0059 (7) | −0.0309 (8) | −0.0121 (7) |
| Cl2 | 0.0836 (11) | 0.0561 (9) | 0.0965 (12) | −0.0203 (8) | −0.0543 (9) | −0.0117 (8) |
| N1 | 0.045 (2) | 0.044 (2) | 0.048 (2) | −0.005 (2) | −0.017 (2) | −0.0118 (19) |
| N2 | 0.049 (2) | 0.039 (2) | 0.050 (2) | −0.0036 (19) | −0.021 (2) | −0.0121 (19) |
| C1 | 0.052 (3) | 0.054 (3) | 0.062 (3) | −0.002 (3) | −0.028 (3) | −0.012 (3) |
| C2 | 0.063 (4) | 0.050 (4) | 0.068 (4) | 0.008 (3) | −0.029 (3) | −0.009 (3) |
| C3 | 0.072 (4) | 0.039 (3) | 0.074 (4) | −0.002 (3) | −0.025 (3) | −0.016 (3) |
| C4 | 0.057 (3) | 0.039 (3) | 0.063 (3) | −0.005 (3) | −0.025 (3) | −0.016 (3) |
| C5 | 0.041 (3) | 0.039 (3) | 0.044 (3) | −0.004 (2) | −0.010 (2) | −0.016 (2) |
| C6 | 0.046 (3) | 0.044 (3) | 0.045 (3) | −0.004 (2) | −0.012 (2) | −0.011 (2) |
| C7 | 0.080 (4) | 0.052 (4) | 0.078 (4) | −0.015 (3) | −0.045 (4) | −0.013 (3) |
| C8 | 0.084 (5) | 0.070 (5) | 0.097 (5) | −0.016 (4) | −0.058 (4) | −0.009 (4) |
| C9 | 0.074 (4) | 0.063 (4) | 0.092 (5) | −0.004 (3) | −0.054 (4) | −0.009 (4) |
| C10 | 0.065 (4) | 0.045 (3) | 0.067 (4) | −0.002 (3) | −0.032 (3) | −0.008 (3) |
| C11 | 0.065 (4) | 0.052 (4) | 0.072 (4) | −0.009 (3) | −0.026 (3) | −0.019 (3) |
| Cl3 | 0.0761 (10) | 0.0652 (10) | 0.0759 (10) | 0.0022 (8) | −0.0354 (9) | −0.0044 (8) |
| Cl4 | 0.0906 (12) | 0.0701 (11) | 0.1211 (15) | 0.0040 (9) | −0.0663 (12) | −0.0139 (10) |
| Pd1—N2 | 2.025 (4) | C4—H4 | 0.90 (5) |
| Pd1—N1 | 2.029 (4) | C5—C6 | 1.480 (7) |
| Pd1—Cl2 | 2.2853 (14) | C6—C7 | 1.371 (7) |
| Pd1—Cl1 | 2.2964 (14) | C7—C8 | 1.377 (9) |
| N1—C1 | 1.335 (6) | C7—H7 | 0.96 (6) |
| N1—C5 | 1.360 (6) | C8—C9 | 1.369 (9) |
| N2—C10 | 1.338 (7) | C8—H8 | 0.83 (6) |
| N2—C6 | 1.359 (6) | C9—C10 | 1.375 (8) |
| C1—C2 | 1.375 (8) | C9—H9 | 0.90 (5) |
| C1—H1 | 0.93 (5) | C10—H10 | 0.86 (5) |
| C2—C3 | 1.360 (8) | C11—Cl4 | 1.743 (6) |
| C2—H2 | 0.93 (5) | C11—Cl3 | 1.765 (6) |
| C3—C4 | 1.376 (8) | C11—H11A | 0.90 (5) |
| C3—H3 | 0.85 (5) | C11—H11B | 0.99 (6) |
| C4—C5 | 1.369 (7) | ||
| N2—Pd1—N1 | 81.04 (16) | N1—C5—C4 | 120.6 (5) |
| N2—Pd1—Cl2 | 174.97 (12) | N1—C5—C6 | 115.2 (4) |
| N1—Pd1—Cl2 | 94.27 (12) | C4—C5—C6 | 124.2 (5) |
| N2—Pd1—Cl1 | 94.74 (12) | N2—C6—C7 | 121.4 (5) |
| N1—Pd1—Cl1 | 175.78 (12) | N2—C6—C5 | 115.0 (4) |
| Cl2—Pd1—Cl1 | 89.94 (5) | C7—C6—C5 | 123.6 (5) |
| C1—N1—C5 | 119.3 (5) | C6—C7—C8 | 118.8 (6) |
| C1—N1—Pd1 | 126.5 (4) | C6—C7—H7 | 122 (4) |
| C5—N1—Pd1 | 114.2 (3) | C8—C7—H7 | 119 (4) |
| C10—N2—C6 | 118.9 (4) | C9—C8—C7 | 120.2 (6) |
| C10—N2—Pd1 | 126.6 (4) | C9—C8—H8 | 118 (5) |
| C6—N2—Pd1 | 114.4 (3) | C7—C8—H8 | 121 (5) |
| N1—C1—C2 | 121.4 (6) | C8—C9—C10 | 118.5 (6) |
| N1—C1—H1 | 116 (3) | C8—C9—H9 | 124 (3) |
| C2—C1—H1 | 123 (3) | C10—C9—H9 | 117 (3) |
| C3—C2—C1 | 119.7 (6) | N2—C10—C9 | 122.2 (6) |
| C3—C2—H2 | 118 (4) | N2—C10—H10 | 118 (3) |
| C1—C2—H2 | 122 (4) | C9—C10—H10 | 119 (3) |
| C2—C3—C4 | 119.2 (6) | Cl4—C11—Cl3 | 111.0 (3) |
| C2—C3—H3 | 124 (3) | Cl4—C11—H11A | 111 (4) |
| C4—C3—H3 | 117 (3) | Cl3—C11—H11A | 106 (4) |
| C5—C4—C3 | 119.8 (5) | Cl4—C11—H11B | 106 (3) |
| C5—C4—H4 | 118 (3) | Cl3—C11—H11B | 103 (4) |
| C3—C4—H4 | 123 (3) | H11A—C11—H11B | 120 (5) |
| N2—Pd1—N1—C1 | −177.3 (4) | C3—C4—C5—N1 | 0.8 (8) |
| Cl2—Pd1—N1—C1 | 4.6 (4) | C3—C4—C5—C6 | −178.8 (5) |
| N2—Pd1—N1—C5 | 2.4 (3) | C10—N2—C6—C7 | 1.7 (8) |
| Cl2—Pd1—N1—C5 | −175.7 (3) | Pd1—N2—C6—C7 | −175.3 (4) |
| N1—Pd1—N2—C10 | 179.8 (5) | C10—N2—C6—C5 | −179.1 (4) |
| Cl1—Pd1—N2—C10 | −0.3 (5) | Pd1—N2—C6—C5 | 4.0 (5) |
| N1—Pd1—N2—C6 | −3.5 (3) | N1—C5—C6—N2 | −2.0 (6) |
| Cl1—Pd1—N2—C6 | 176.4 (3) | C4—C5—C6—N2 | 177.6 (5) |
| C5—N1—C1—C2 | 1.2 (8) | N1—C5—C6—C7 | 177.3 (5) |
| Pd1—N1—C1—C2 | −179.2 (4) | C4—C5—C6—C7 | −3.1 (8) |
| N1—C1—C2—C3 | −1.3 (9) | N2—C6—C7—C8 | −1.0 (9) |
| C1—C2—C3—C4 | 1.1 (9) | C5—C6—C7—C8 | 179.8 (6) |
| C2—C3—C4—C5 | −0.8 (9) | C6—C7—C8—C9 | 0.7 (11) |
| C1—N1—C5—C4 | −0.9 (7) | C7—C8—C9—C10 | −1.2 (11) |
| Pd1—N1—C5—C4 | 179.4 (4) | C6—N2—C10—C9 | −2.2 (9) |
| C1—N1—C5—C6 | 178.7 (4) | Pd1—N2—C10—C9 | 174.4 (5) |
| Pd1—N1—C5—C6 | −1.0 (5) | C8—C9—C10—N2 | 1.9 (10) |
| H··· | ||||
| C1—H1···Cl2 | 0.93 (5) | 2.59 (5) | 3.230 (6) | 126 (4) |
| C2—H2···Cl2i | 0.93 (5) | 2.79 (5) | 3.595 (7) | 145 (4) |
| C10—H10···Cl1 | 0.86 (5) | 2.68 (5) | 3.248 (6) | 125 (4) |
| C11—H11B···Cl1 | 0.99 (6) | 2.63 (6) | 3.578 (8) | 161 (5) |
Selected bond lengths (Å)
| Pd1—N2 | 2.025 (4) |
| Pd1—N1 | 2.029 (4) |
| Pd1—Cl2 | 2.2853 (14) |
| Pd1—Cl1 | 2.2964 (14) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C1—H1⋯Cl2 | 0.93 (5) | 2.59 (5) | 3.230 (6) | 126 (4) |
| C2—H2⋯Cl2i | 0.93 (5) | 2.79 (5) | 3.595 (7) | 145 (4) |
| C10—H10⋯Cl1 | 0.86 (5) | 2.68 (5) | 3.248 (6) | 125 (4) |
| C11—H11 | 0.99 (6) | 2.63 (6) | 3.578 (8) | 161 (5) |
Symmetry code: (i) .