Literature DB >> 21579964

Dibromido(1,10-phenanthroline-κN,N')palladium(II).

Kwang Ha1.   

Abstract

In the title complex, [PdBr(2)(C(12)H(8)N(2))], the Pd(II) ion is four-coordinated in a slightly distorted square-planar environment by two N atoms of the chelating 1,10-phenanthroline ligand and two bromide ions. The complex displays numerous inter-molecular π-π inter-actions between adjacent six-membered rings, the shortest centroid-centroid distance being 3.680 (4) Å. The nearly planar [maximum deviation 0.143 (2) Å] mol-ecules stack in columns parallel to (101) with a Pd⋯Pd distance of 4.8466 (9) Å.

Entities:  

Year:  2009        PMID: 21579964      PMCID: PMC2980023          DOI: 10.1107/S160053680905168X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the syntheses of [PdX 2(phen)] complexes (phen = 1,10-phenanthroline; X = Cl, Br, I or SCN), see: Cheng et al. (1977 ▶). For the crystal structure of yellow [PtCl2(phen)] which is isotypic to the title complex, see: Grzesiak & Matzger (2007 ▶). For the crystal structures of related Pd-bipy complexes, [PdX 2(bipy)] (bipy = 2,2′-bipyridine; X = Cl, Br or I), see: Maekawa et al. (1991 ▶); Smeets et al. (1997 ▶); Ha (2009 ▶).

Experimental

Crystal data

[PdBr2(C12H8N2)] M = 446.42 Monoclinic, a = 9.9099 (6) Å b = 17.4897 (10) Å c = 7.2598 (4) Å β = 109.106 (1)° V = 1188.96 (12) Å3 Z = 4 Mo Kα radiation μ = 8.26 mm−1 T = 200 K 0.22 × 0.06 × 0.04 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.420, T max = 0.719 8695 measured reflections 2933 independent reflections 1729 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.091 S = 1.00 2933 reflections 154 parameters H-atom parameters constrained Δρmax = 1.37 e Å−3 Δρmin = −1.54 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680905168X/xu2703sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680905168X/xu2703Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdBr2(C12H8N2)]F(000) = 840
Mr = 446.42Dx = 2.494 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1837 reflections
a = 9.9099 (6) Åθ = 2.3–28.2°
b = 17.4897 (10) ŵ = 8.26 mm1
c = 7.2598 (4) ÅT = 200 K
β = 109.106 (1)°Needle, yellow
V = 1188.96 (12) Å30.22 × 0.06 × 0.04 mm
Z = 4
Bruker SMART 1000 CCD diffractometer2933 independent reflections
Radiation source: fine-focus sealed tube1729 reflections with I > 2σ(I)
graphiteRint = 0.082
φ and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −13→12
Tmin = 0.420, Tmax = 0.719k = −23→23
8695 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0152P)2] where P = (Fo2 + 2Fc2)/3
2933 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 1.37 e Å3
0 restraintsΔρmin = −1.54 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.70926 (6)0.34181 (3)−0.10593 (9)0.02059 (16)
Br10.74510 (9)0.47817 (4)−0.08022 (13)0.0299 (2)
Br20.46176 (9)0.36087 (5)−0.29008 (13)0.0352 (2)
N10.6966 (7)0.2243 (3)−0.1180 (9)0.0251 (15)
N20.9155 (6)0.3173 (3)0.0591 (8)0.0172 (13)
C10.5885 (8)0.1797 (4)−0.2101 (11)0.0285 (19)
H10.50120.2027−0.28590.034*
C20.5963 (10)0.1002 (4)−0.2012 (12)0.036 (2)
H20.51690.0698−0.27230.043*
C30.7203 (9)0.0668 (4)−0.0885 (12)0.033 (2)
H30.72570.0127−0.07870.040*
C40.8411 (9)0.1110 (4)0.0142 (12)0.0251 (19)
C50.9779 (9)0.0822 (4)0.1358 (12)0.032 (2)
H50.99120.02860.15540.039*
C61.0848 (9)0.1291 (4)0.2199 (11)0.0277 (19)
H61.17400.10790.29540.033*
C71.0718 (8)0.2103 (4)0.2022 (11)0.0217 (17)
C81.1806 (8)0.2624 (4)0.2872 (11)0.0249 (18)
H81.27180.24490.36640.030*
C91.1558 (8)0.3383 (4)0.2568 (12)0.0297 (19)
H91.22980.37390.31520.036*
C101.0228 (8)0.3643 (4)0.1406 (11)0.0226 (18)
H101.00850.41770.11900.027*
C110.9395 (7)0.2402 (4)0.0878 (10)0.0167 (16)
C120.8238 (8)0.1901 (4)−0.0051 (10)0.0188 (17)
U11U22U33U12U13U23
Pd10.0183 (3)0.0196 (3)0.0226 (3)−0.0008 (3)0.0051 (2)0.0000 (3)
Br10.0289 (5)0.0197 (4)0.0388 (5)0.0016 (4)0.0078 (4)0.0009 (4)
Br20.0193 (4)0.0391 (5)0.0408 (6)0.0006 (4)0.0013 (4)0.0039 (4)
N10.026 (4)0.026 (3)0.026 (4)−0.005 (3)0.012 (3)0.001 (3)
N20.014 (3)0.016 (3)0.018 (3)−0.003 (3)−0.001 (3)0.001 (3)
C10.015 (4)0.039 (5)0.027 (5)−0.007 (4)0.001 (3)−0.005 (4)
C20.046 (6)0.032 (5)0.029 (5)−0.014 (5)0.011 (4)−0.008 (4)
C30.053 (6)0.021 (4)0.034 (5)−0.010 (4)0.024 (5)−0.008 (4)
C40.038 (5)0.014 (4)0.030 (5)−0.009 (4)0.020 (4)−0.003 (3)
C50.047 (6)0.015 (4)0.042 (6)0.013 (4)0.025 (5)0.011 (4)
C60.032 (5)0.028 (4)0.026 (5)0.007 (4)0.012 (4)0.011 (4)
C70.023 (4)0.025 (4)0.022 (4)0.008 (4)0.014 (4)0.004 (4)
C80.014 (4)0.033 (5)0.024 (5)0.005 (4)0.001 (3)0.004 (4)
C90.025 (5)0.025 (4)0.036 (5)0.000 (4)0.006 (4)0.002 (4)
C100.024 (5)0.019 (4)0.026 (5)−0.005 (3)0.009 (4)0.004 (3)
C110.012 (4)0.025 (4)0.016 (4)−0.004 (3)0.009 (3)0.000 (3)
C120.020 (4)0.018 (4)0.018 (4)0.000 (3)0.007 (3)0.001 (3)
Pd1—N12.059 (6)C4—C121.395 (9)
Pd1—N22.048 (6)C4—C51.445 (11)
Pd1—Br12.4095 (9)C5—C61.321 (10)
Pd1—Br22.4016 (10)C5—H50.9500
N1—C11.317 (9)C6—C71.428 (9)
N1—C121.394 (9)C6—H60.9500
N2—C101.321 (8)C7—C81.392 (10)
N2—C111.373 (8)C7—C111.404 (10)
C1—C21.392 (10)C8—C91.355 (9)
C1—H10.9500C8—H80.9500
C2—C31.365 (11)C9—C101.388 (10)
C2—H20.9500C9—H90.9500
C3—C41.414 (11)C10—H100.9500
C3—H30.9500C11—C121.426 (9)
N2—Pd1—N181.5 (2)C6—C5—C4121.0 (7)
N2—Pd1—Br2175.30 (15)C6—C5—H5119.5
N1—Pd1—Br294.47 (19)C4—C5—H5119.5
N2—Pd1—Br193.91 (15)C5—C6—C7122.8 (8)
N1—Pd1—Br1175.29 (19)C5—C6—H6118.6
Br2—Pd1—Br190.20 (3)C7—C6—H6118.6
C1—N1—C12118.2 (6)C8—C7—C11117.1 (6)
C1—N1—Pd1129.9 (6)C8—C7—C6125.3 (7)
C12—N1—Pd1111.9 (5)C11—C7—C6117.6 (8)
C10—N2—C11118.0 (6)C9—C8—C7119.8 (7)
C10—N2—Pd1129.4 (5)C9—C8—H8120.1
C11—N2—Pd1112.6 (4)C7—C8—H8120.1
N1—C1—C2123.0 (8)C8—C9—C10120.4 (8)
N1—C1—H1118.5C8—C9—H9119.8
C2—C1—H1118.5C10—C9—H9119.8
C3—C2—C1118.7 (8)N2—C10—C9122.2 (7)
C3—C2—H2120.6N2—C10—H10118.9
C1—C2—H2120.6C9—C10—H10118.9
C2—C3—C4121.5 (7)N2—C11—C7122.5 (7)
C2—C3—H3119.3N2—C11—C12117.3 (6)
C4—C3—H3119.3C7—C11—C12120.1 (7)
C12—C4—C3115.7 (8)N1—C12—C4122.8 (7)
C12—C4—C5117.9 (7)N1—C12—C11116.6 (6)
C3—C4—C5126.4 (7)C4—C12—C11120.6 (7)
N2—Pd1—N1—C1−178.2 (7)Pd1—N2—C10—C9176.9 (5)
Br2—Pd1—N1—C14.2 (6)C8—C9—C10—N21.3 (11)
N2—Pd1—N1—C123.5 (5)C10—N2—C11—C71.2 (9)
Br2—Pd1—N1—C12−174.1 (4)Pd1—N2—C11—C7−177.7 (5)
N1—Pd1—N2—C10177.9 (6)C10—N2—C11—C12−178.5 (6)
Br1—Pd1—N2—C10−1.2 (6)Pd1—N2—C11—C122.6 (7)
N1—Pd1—N2—C11−3.4 (5)C8—C7—C11—N2−0.2 (10)
Br1—Pd1—N2—C11177.5 (4)C6—C7—C11—N2−179.3 (6)
C12—N1—C1—C2−0.7 (11)C8—C7—C11—C12179.5 (6)
Pd1—N1—C1—C2−178.9 (5)C6—C7—C11—C120.3 (10)
N1—C1—C2—C31.6 (12)C1—N1—C12—C40.0 (10)
C1—C2—C3—C4−1.7 (12)Pd1—N1—C12—C4178.5 (5)
C2—C3—C4—C121.0 (11)C1—N1—C12—C11178.3 (6)
C2—C3—C4—C5−179.3 (7)Pd1—N1—C12—C11−3.2 (7)
C12—C4—C5—C6−2.5 (11)C3—C4—C12—N1−0.1 (10)
C3—C4—C5—C6177.8 (7)C5—C4—C12—N1−179.8 (6)
C4—C5—C6—C72.0 (11)C3—C4—C12—C11−178.3 (6)
C5—C6—C7—C8−179.9 (7)C5—C4—C12—C112.0 (10)
C5—C6—C7—C11−0.9 (11)N2—C11—C12—N10.4 (9)
C11—C7—C8—C9−0.3 (10)C7—C11—C12—N1−179.2 (6)
C6—C7—C8—C9178.8 (7)N2—C11—C12—C4178.7 (6)
C7—C8—C9—C10−0.3 (11)C7—C11—C12—C4−0.9 (10)
C11—N2—C10—C9−1.8 (10)
Table 1

Selected bond lengths (Å)

Pd1—N12.059 (6)
Pd1—N22.048 (6)
Pd1—Br12.4095 (9)
Pd1—Br22.4016 (10)
  4 in total

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