Literature DB >> 22904776

cis-Diiodido(N,N,N',N'-tetra-methyl-ethylenediamine-κ(2)N,N')palladium(II).

Antonio Abellán-López, María Teresa Chicote-Olalla, Delia Bautista-Cerezo.   

Abstract

In the title complex, cis-[PdI(2)(C(6)H(16)N(2))], the n class="Chemical">Pd(II) atom lies on a crystallographic twofold rotation axis and is four-coordinated by the two N atoms of a chelating N,N,N',N'-tetra-methyl-ethylenediamine ligand [Pd-N = 2.125 (3) Å] and two I atoms [Pd-I = 2.5833 (4) Å], displaying a distorted square-planar geometry (r.m.s. deviation = 0.005 Å), imposed by the small bite of the chelating ligand [N-Pd-N angle = 84.68 (18)°].

Entities:  

Year:  2012        PMID: 22904776      PMCID: PMC3414169          DOI: 10.1107/S1600536812033004

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related diiodido complexes, see: Jones et al. (2007 ▶); Wursche et al. (1999 ▶); Dodd et al. (2006 ▶); Alsters et al. (1993 ▶); Bhattacharyya et al. (2009 ▶); Ha (2009 ▶, 2010 ▶). For mol­ecular parameters in related dichlorido complexes, see: Boyle et al. (2004 ▶); Iball et al. (1975 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

[PdI2(n class="CellLine">C6H16N2)] M = 476.41 Monoclinic, a = 7.9266 (4) Å b = 14.6911 (7) Å c = 10.5309 (5) Å β = 107.262 (2)° V = 1171.09 (10) Å3 Z = 4 Mo Kα radiation μ = 6.81 mm−1 T = 100 K 0.22 × 0.15 × 0.03 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.581, T max = 0.822 6502 measured reflections 1351 independent reflections 1326 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.060 S = 1.14 1351 reflections 53 parameters H-atom parameters constrained Δρmax = 1.23 e Å−3 Δρmin = −0.73 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033004/lr2073sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033004/lr2073Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdI2(C6H16N2)]F(000) = 872
Mr = 476.41Dx = 2.702 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4971 reflections
a = 7.9266 (4) Åθ = 2.8–28.1°
b = 14.6911 (7) ŵ = 6.81 mm1
c = 10.5309 (5) ÅT = 100 K
β = 107.262 (2)°Needle, red
V = 1171.09 (10) Å30.22 × 0.15 × 0.03 mm
Z = 4
Bruker SMART APEX CCD diffractometer1351 independent reflections
Radiation source: fine-focus sealed tube1326 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 8.26 pixels mm-1θmax = 28.1°, θmin = 2.8°
ω scanh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2003)k = −18→18
Tmin = 0.581, Tmax = 0.822l = −13→13
6502 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.060H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.025P)2 + 10.9315P] where P = (Fo2 + 2Fc2)/3
1351 reflections(Δ/σ)max = 0.001
53 parametersΔρmax = 1.23 e Å3
0 restraintsΔρmin = −0.73 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)- 0.3294 (0.0368) x + 14.6093 (0.0042) y + 1.1036 (0.0293) z = 6.0620 (0.0112)* 0.0000 (0.0000) N1 * 0.0000 (0.0000) C2 * 0.0000 (0.0000) C3Rms deviation of fitted atoms = 0.00000.3294 (0.0369) x + 14.6093 (0.0042) y - 1.1036 (0.0293) z = 5.8396 (0.0312)Angle to previous plane (with approximate e.s.d.) = 12.10 (0.08)* 0.0000 (0.0000) N1_$1 * 0.0000 (0.0000) C2_$1 * 0.0000 (0.0000) C3_$1Rms deviation of fitted atoms = 0.00005.5219 (0.0048) x - 0.0000 (0.0000) y - 9.3919 (0.0040) z = 0.4130 (0.0034)Angle to previous plane (with approximate e.s.d.) = 84.35 (0.22)* 0.0000 (0.0000) Pd1 * 0.0062 (0.0019) N1 * 0.0050 (0.0015) I1 * -0.0062 (0.0019) N1_$1 * -0.0050 (0.0015) I1_$1Rms deviation of fitted atoms = 0.0050
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.50000.51798 (3)0.25000.01073 (10)
I10.71154 (4)0.644568 (18)0.37384 (3)0.02349 (10)
N10.3317 (4)0.4111 (2)0.1504 (3)0.0136 (6)
C10.4427 (5)0.3275 (3)0.1794 (4)0.0191 (8)
H1A0.51750.32460.11920.023*
H1B0.36560.27310.16320.023*
C20.1807 (5)0.4035 (3)0.2057 (4)0.0209 (8)
H2A0.11290.46030.18960.031*
H2B0.22510.39220.30160.031*
H2C0.10450.35290.16250.031*
C30.2605 (6)0.4205 (3)0.0038 (4)0.0216 (8)
H3A0.19470.3654−0.03360.032*
H3B0.35840.4291−0.03410.032*
H3C0.18160.4733−0.01760.032*
U11U22U33U12U13U23
Pd10.01163 (18)0.01133 (18)0.00958 (18)0.0000.00366 (13)0.000
I10.02803 (17)0.02164 (16)0.01984 (16)−0.01018 (10)0.00561 (11)−0.00239 (10)
N10.0124 (14)0.0169 (15)0.0119 (14)−0.0017 (12)0.0040 (11)−0.0028 (12)
C10.0214 (19)0.0140 (17)0.022 (2)−0.0004 (15)0.0073 (16)−0.0038 (15)
C20.0145 (18)0.029 (2)0.022 (2)−0.0052 (15)0.0090 (15)−0.0034 (17)
C30.024 (2)0.025 (2)0.0134 (18)−0.0046 (16)0.0033 (15)−0.0043 (16)
Pd1—N12.125 (3)C1—H1A0.9900
Pd1—N1i2.125 (3)C1—H1B0.9900
Pd1—I12.5833 (4)C2—H2A0.9800
Pd1—I1i2.5833 (4)C2—H2B0.9800
N1—C21.483 (5)C2—H2C0.9800
N1—C31.484 (5)C3—H3A0.9800
N1—C11.488 (5)C3—H3B0.9800
C1—C1i1.494 (8)C3—H3C0.9800
N1—Pd1—N1i84.68 (18)N1—C1—H1B109.5
N1—Pd1—I1178.36 (9)C1i—C1—H1B109.5
N1i—Pd1—I193.71 (9)H1A—C1—H1B108.1
N1—Pd1—I1i93.71 (9)N1—C2—H2A109.5
N1i—Pd1—I1i178.36 (9)N1—C2—H2B109.5
I1—Pd1—I1i87.906 (18)H2A—C2—H2B109.5
C2—N1—C3108.3 (3)N1—C2—H2C109.5
C2—N1—C1110.7 (3)H2A—C2—H2C109.5
C3—N1—C1108.1 (3)H2B—C2—H2C109.5
C2—N1—Pd1108.9 (2)N1—C3—H3A109.5
C3—N1—Pd1115.7 (2)N1—C3—H3B109.5
C1—N1—Pd1105.2 (2)H3A—C3—H3B109.5
N1—C1—C1i110.6 (3)N1—C3—H3C109.5
N1—C1—H1A109.5H3A—C3—H3C109.5
C1i—C1—H1A109.5H3B—C3—H3C109.5
N1i—Pd1—N1—C2104.9 (3)I1i—Pd1—N1—C1166.5 (2)
I1i—Pd1—N1—C2−74.8 (2)C2—N1—C1—C1i−77.3 (4)
N1i—Pd1—N1—C3−133.0 (3)C3—N1—C1—C1i164.2 (4)
I1i—Pd1—N1—C347.3 (3)Pd1—N1—C1—C1i40.1 (4)
N1i—Pd1—N1—C1−13.83 (18)N1—C1—C1i—N1i−56.4 (6)
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3.  (2,2'-Bipyridine-κN,N')diiodido-palladium(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

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1.  cis-Dichloridobis(N,N,N',N'-tetra-methyl-ethane-1,2-diamine)-platinum(II).

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