Literature DB >> 21577660

dl-Asparaginium perchlorate.

Fatiha Guenifa, Lamia Bendjeddou, Aouatef Cherouana, Slimane Dahaoui, Claude Lecomte.   

Abstract

Two enantiomeric counterparts (l- and d-asparginium cations related by glide planes) are present in the structure of the title compound, C(4)H(9)N(2)O(3) (+)·ClO(4) (-), with a 1:1 cation-anion ratio. The structure is built up from asparginium cations and perchlorate anions. In the crystal, mol-ecules assemble in double layers parallel to (100) through N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds. In the asparginium layers, hydrogen bonds generate alternating R(2) (2)(8) and R(4) (3)(18) graph-set motifs. Further hydrogen bonds involving the anions and cations result in the formation of a three-dimensional network.

Entities:  

Year:  2009        PMID: 21577660      PMCID: PMC2969914          DOI: 10.1107/S1600536809033534

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of dl-asparagine in growth-media for bacteria, see: Gerhardt & Wilson (1948 ▶); Palleroni et al. (1973 ▶); van Wagtendonk et al. (1963 ▶). For related structures, see: Aarthy et al. (2005 ▶); Anitha et al. (2005 ▶); Bendjeddou et al. (2009 ▶); Verbist et al. (1972 ▶); Wang et al. (1985 ▶); Yamada et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C4H9N2O3 +·ClO4 M = 232.58 Orthorhombic, a = 9.861 (5) Å b = 10.289 (4) Å c = 16.700 (5) Å V = 1694.4 (12) Å3 Z = 8 Mo Kα radiation μ = 0.47 mm−1 T = 100 K 0.09 × 0.04 × 0.02 mm

Data collection

Oxford Diffraction Xcalibur Saphire2 CCD diffractometer Absorption correction: none 45509 measured reflections 2818 independent reflections 2205 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.100 S = 1.12 2818 reflections 127 parameters 1 restraint H-atom parameters constrained Δρmax = 0.68 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PARST97 (Nardelli, 1995 ▶) and Mercury (Macrae et al., 2006 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809033534/at2865sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033534/at2865Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H9N2O3+·ClO4F(000) = 960
Mr = 232.58Dx = 1.823 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2818 reflections
a = 9.861 (5) Åθ = 3.1–31.5°
b = 10.289 (4) ŵ = 0.47 mm1
c = 16.700 (5) ÅT = 100 K
V = 1694.4 (12) Å3Needle, colourless
Z = 80.09 × 0.04 × 0.02 mm
Oxford Diffraction Xcalibur Saphire2 CCD diffractometer2205 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
graphiteθmax = 31.5°, θmin = 3.1°
φ and ω scansh = −14→14
45509 measured reflectionsk = −15→11
2818 independent reflectionsl = −24→24
Refinement on F21 restraint
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.034w = 1/[σ2(Fo2) + (0.0538P)2 + 0.6998P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.100(Δ/σ)max = 0.001
S = 1.12Δρmax = 0.68 e Å3
2818 reflectionsΔρmin = −0.38 e Å3
127 parameters
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.58079 (10)0.69351 (10)0.73615 (6)0.0162 (3)
O20.45528 (9)0.59815 (10)0.63971 (6)0.0139 (3)
O30.61640 (11)0.32442 (10)0.70705 (6)0.0158 (3)
N10.67333 (11)0.48834 (11)0.57093 (6)0.0115 (3)
N20.71473 (14)0.37342 (13)0.82581 (7)0.0204 (4)
C10.56293 (14)0.62144 (13)0.67245 (8)0.0117 (3)
C20.69857 (13)0.56919 (13)0.64328 (8)0.0111 (3)
C30.77716 (13)0.49753 (13)0.70849 (8)0.0126 (3)
C40.69625 (14)0.39103 (13)0.74834 (8)0.0127 (3)
Cl0.47309 (3)0.19831 (3)0.51836 (2)0.0127 (1)
O40.40552 (10)0.17287 (10)0.44286 (6)0.0158 (3)
O50.43440 (10)0.32809 (10)0.54535 (6)0.0145 (3)
O60.43348 (15)0.10450 (12)0.57652 (7)0.0315 (4)
O70.61761 (11)0.19650 (11)0.50614 (7)0.0226 (3)
H10.507330.721200.751580.0243*
H1A0.751640.456810.552900.0172*
H1B0.634990.536940.533100.0172*
H1C0.618280.422910.583500.0172*
H20.753520.643820.626630.0133*
H3A0.858260.460000.685130.0151*
H3B0.805480.559640.748870.0151*
H4N0.674370.310630.847370.0246*
H5N0.775230.418070.848130.0246*
U11U22U33U12U13U23
O10.0144 (5)0.0187 (5)0.0156 (5)0.0014 (4)0.0022 (4)−0.0059 (4)
O20.0116 (4)0.0155 (5)0.0146 (5)0.0008 (3)0.0014 (3)0.0001 (4)
O30.0162 (5)0.0177 (5)0.0135 (4)−0.0048 (4)−0.0012 (4)0.0035 (4)
N10.0113 (5)0.0127 (5)0.0104 (5)0.0015 (4)0.0010 (4)0.0002 (4)
N20.0253 (7)0.0250 (7)0.0110 (5)0.0020 (5)−0.0013 (4)0.0023 (5)
C10.0134 (6)0.0092 (5)0.0125 (6)−0.0007 (4)0.0028 (4)0.0024 (5)
C20.0104 (5)0.0108 (5)0.0120 (5)−0.0010 (4)0.0013 (4)−0.0014 (4)
C30.0102 (5)0.0141 (6)0.0135 (6)−0.0005 (4)−0.0017 (4)−0.0010 (5)
C40.0128 (5)0.0133 (6)0.0119 (6)0.0045 (5)0.0010 (4)−0.0002 (5)
Cl0.0164 (2)0.0106 (2)0.0112 (2)−0.0003 (1)−0.0021 (1)0.0004 (1)
O40.0155 (5)0.0178 (5)0.0142 (5)−0.0034 (4)−0.0043 (4)−0.0027 (4)
O50.0165 (5)0.0125 (5)0.0145 (5)0.0006 (3)−0.0008 (4)−0.0023 (4)
O60.0588 (9)0.0177 (5)0.0179 (6)−0.0056 (5)0.0043 (5)0.0082 (4)
O70.0145 (5)0.0267 (6)0.0265 (6)0.0061 (4)−0.0080 (4)−0.0079 (4)
Cl—O51.4601 (13)N1—H1C0.8900
Cl—O61.4239 (15)N1—H1B0.8900
Cl—O41.4499 (13)N2—H4N0.8400
Cl—O71.4398 (13)N2—H5N0.8400
O1—C11.3086 (18)C1—C21.522 (2)
O2—C11.2179 (18)C2—C31.527 (2)
O3—C41.2511 (18)C3—C41.510 (2)
O1—H10.8200C2—H20.9800
N1—C21.4879 (19)C3—H3A0.9700
N2—C41.3190 (19)C3—H3B0.9700
N1—H1A0.8900
O5—Cl—O6109.74 (7)O1—C1—C2110.01 (11)
O5—Cl—O7108.32 (6)O1—C1—O2126.42 (13)
O6—Cl—O7111.07 (8)N1—C2—C3113.22 (11)
O4—Cl—O5108.27 (6)N1—C2—C1108.09 (10)
O4—Cl—O6110.17 (7)C1—C2—C3112.86 (11)
O4—Cl—O7109.23 (6)C2—C3—C4113.37 (11)
C1—O1—H1109.00N2—C4—C3117.32 (12)
C2—N1—H1A109.00O3—C4—N2123.53 (13)
C2—N1—H1B109.00O3—C4—C3119.16 (12)
H1B—N1—H1C109.00N1—C2—H2107.00
H1A—N1—H1C109.00C1—C2—H2107.00
C2—N1—H1C109.00C3—C2—H2107.00
H1A—N1—H1B109.00H3A—C3—H3B108.00
C4—N2—H5N117.00C2—C3—H3A109.00
H4N—N2—H5N125.00C2—C3—H3B109.00
C4—N2—H4N117.00C4—C3—H3A109.00
O2—C1—C2123.57 (12)C4—C3—H3B109.00
D—H···AD—HH···AD···AD—H···A
O1—H1···O3i0.82001.76002.5485 (19)161.00
N1—H1A···O4ii0.89002.02002.837 (2)152.00
N1—H1B···O5iii0.89002.03002.910 (2)171.00
N1—H1C···O30.89002.30002.886 (2)123.00
N1—H1C···O50.89002.16002.907 (2)142.00
N2—H4N···O2iv0.84002.54003.341 (2)159.00
N2—H5N···O2v0.84002.57003.362 (2)157.00
N2—H5N···O5v0.84002.55003.089 (2)123.00
C2—H2···O7vi0.98002.44003.201 (2)134.00
C3—H3A···O4ii0.97002.58003.326 (2)134.00
C3—H3B···O2v0.97002.41003.253 (2)145.00
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O3i0.821.762.5485 (19)161
N1—H1A⋯O4ii0.892.022.837 (2)152
N1—H1B⋯O5iii0.892.032.910 (2)171
N1—H1C⋯O30.892.302.886 (2)123
N1—H1C⋯O50.892.162.907 (2)142
N2—H4N⋯O2iv0.842.543.341 (2)159
N2—H5N⋯O2v0.842.573.362 (2)157
N2—H5N⋯O5v0.842.553.089 (2)123
C2—H2⋯O7vi0.982.443.201 (2)134
C3—H3A⋯O4ii0.972.583.326 (2)134
C3—H3B⋯O2v0.972.413.253 (2)145

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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