Literature DB >> 23468782

Bis(adeninium) bis-(hydrogensulfate) sulfate.

Fatiha Guenifa1, Lamia Bendjeddou, Aouatef Cherouana, Slimane Dahaoui, Claude Lecomte.   

Abstract

The title compound, 2C5H7N5(2+)·2HSO4(-)·SO4(2-), was synthesized from adenine and sulfuric acid. The asymmetric unit contains two diprotonated adeninium cations, two bis-ulfate anions and one sulfate anion. The crystal structure is stabilized by classical N-H⋯O and O-H⋯O hydrogen bonds, and weak C-H⋯O and C-H⋯N hydrogen bonds, generating a three-dimensional network.

Entities:  

Year:  2012        PMID: 23468782      PMCID: PMC3588817          DOI: 10.1107/S1600536812044728

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the title compound, see: Biradha et al. (2010 ▶); Guenifa et al. (2009 ▶); Zeghouan et al. (2012 ▶). For related structures, see: Bendjeddou et al. (2003 ▶); Fun et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

2C5H7N5 +·2HSO4 −·SO4 2− M = 564.54 Monoclinic, a = 26.370 (5) Å b = 8.970 (2) Å c = 20.350 (4) Å β = 126.184 (10)° V = 3885.2 (15) Å3 Z = 8 Mo Kα radiation μ = 0.48 mm−1 T = 120 K 0.3 × 0.3 × 0.2 mm

Data collection

Nonius KappaCCD diffractometer 5681 measured reflections 5681 independent reflections 3989 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.131 S = 1.07 5681 reflections 352 parameters 12 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.09 e Å−3 Δρmin = −0.60 e Å−3 Data collection: KappaCCD Reference Manual (Nonius, 1998 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PARST97 (Nardelli, 1995 ▶), Mercury (Macrae et al., 2006 ▶) and POVRay (Persistence of Vision Team, 2004 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044728/xu5635sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044728/xu5635Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C5H7N5+·2HSO4·SO42F(000) = 2320
Mr = 564.54Dx = 1.93 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5681 reflections
a = 26.370 (5) Åθ = 3–30.0°
b = 8.970 (2) ŵ = 0.48 mm1
c = 20.350 (4) ÅT = 120 K
β = 126.184 (10)°Needle, colourless
V = 3885.2 (15) Å30.3 × 0.3 × 0.2 mm
Z = 8
Nonius KappaCCD diffractometer3989 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.000
Graphite monochromatorθmax = 30.0°, θmin = 3.0°
ω scansh = 0→37
5681 measured reflectionsk = 0→12
5681 independent reflectionsl = −28→23
Refinement on F212 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.043w = 1/[σ2(Fo2) + (0.0749P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.131(Δ/σ)max = 0.001
S = 1.07Δρmax = 1.09 e Å3
5681 reflectionsΔρmin = −0.60 e Å3
352 parameters
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1A0.20719 (9)0.0944 (2)0.05345 (11)0.0164 (5)
N2A0.27322 (9)0.0677 (2)0.19479 (12)0.0196 (6)
N3A0.18368 (9)0.3217 (2)−0.01909 (11)0.0177 (5)
N7A0.28666 (9)0.4136 (2)0.19011 (11)0.0161 (5)
N9A0.23914 (9)0.5305 (2)0.07420 (11)0.0171 (5)
C2A0.17772 (10)0.1776 (3)−0.01588 (13)0.0177 (6)
C4A0.22262 (10)0.3823 (2)0.05632 (13)0.0145 (6)
C5A0.25287 (10)0.3085 (2)0.12903 (13)0.0149 (6)
C6A0.24601 (10)0.1527 (2)0.12997 (13)0.0153 (6)
C8A0.27706 (10)0.5455 (2)0.15458 (14)0.0172 (6)
N1B0.05771 (9)0.5676 (2)0.20961 (12)0.0179 (5)
N2B−0.01182 (9)0.5628 (2)0.06749 (12)0.0172 (5)
N3B0.08777 (9)0.7852 (2)0.29107 (12)0.0206 (6)
N7B−0.02158 (9)0.9017 (2)0.08688 (12)0.0168 (5)
N9B0.03572 (9)1.0065 (2)0.20639 (12)0.0196 (6)
C2B0.09047 (11)0.6417 (3)0.28198 (14)0.0203 (7)
C4B0.04770 (10)0.8566 (3)0.21910 (13)0.0164 (6)
C5B0.01143 (10)0.7901 (2)0.14346 (13)0.0154 (6)
C6B0.01706 (10)0.6360 (2)0.13545 (13)0.0154 (6)
C8B−0.00578 (10)1.0302 (3)0.12637 (13)0.0179 (6)
S20.12525 (3)0.26071 (6)0.38069 (3)0.0165 (2)
O50.08129 (8)0.35729 (19)0.39253 (10)0.0234 (5)
O60.12578 (9)0.1108 (2)0.40732 (12)0.0339 (6)
O70.09306 (9)0.2668 (2)0.29303 (11)0.0294 (6)
O80.18679 (8)0.3294 (2)0.42607 (11)0.0332 (6)
S30.11514 (3)0.24895 (6)0.13708 (3)0.0156 (2)
O90.17374 (8)0.3204 (2)0.20016 (10)0.0253 (5)
O100.05962 (7)0.30655 (18)0.12953 (10)0.0202 (5)
O110.12193 (8)0.08329 (18)0.16194 (10)0.0213 (5)
O120.10420 (8)0.24888 (17)0.05736 (9)0.0179 (4)
S10.13614 (3)0.77672 (6)0.08987 (3)0.0152 (2)
O10.09098 (8)0.90674 (18)0.05182 (10)0.0216 (5)
O20.19547 (7)0.81613 (18)0.10101 (10)0.0204 (5)
O30.14779 (8)0.74736 (17)0.16871 (9)0.0191 (5)
O40.10611 (7)0.64802 (18)0.03559 (9)0.0201 (5)
H1A0.2012 (12)−0.0058 (19)0.0530 (15)0.0240*
H2A0.151100.12780−0.065100.0210*
H7A0.3078 (11)0.393 (3)0.2428 (10)0.0240*
H8A0.294400.635000.182000.0210*
H9A0.2268 (12)0.602 (2)0.0373 (13)0.0240*
H21A0.2959 (11)0.105 (3)0.2450 (11)0.0240*
H22A0.2669 (12)−0.0326 (19)0.1924 (15)0.0240*
H1B0.0625 (12)0.4704 (19)0.2105 (16)0.0240*
H2B0.117000.585600.328900.0240*
H7B−0.0488 (10)0.891 (3)0.0315 (10)0.0240*
H8B−0.021201.123000.102100.0210*
H9B0.0541 (11)1.081 (2)0.2402 (13)0.0240*
H21B−0.0057 (12)0.4657 (19)0.0680 (16)0.0240*
H22B−0.0407 (10)0.611 (3)0.0202 (12)0.0240*
H50.0918 (12)0.357 (3)0.4403 (11)0.0300*
H110.1146 (13)0.026 (3)0.1202 (13)0.0300*
U11U22U33U12U13U23
N1A0.0185 (9)0.0135 (9)0.0155 (9)−0.0025 (7)0.0091 (8)−0.0015 (7)
N2A0.0237 (10)0.0134 (9)0.0181 (10)−0.0018 (8)0.0103 (9)0.0027 (8)
N3A0.0184 (9)0.0176 (9)0.0161 (9)−0.0003 (8)0.0096 (8)0.0000 (7)
N7A0.0170 (9)0.0137 (9)0.0151 (9)−0.0006 (7)0.0081 (8)−0.0010 (7)
N9A0.0192 (9)0.0114 (9)0.0176 (9)0.0011 (7)0.0092 (8)0.0022 (7)
C2A0.0167 (10)0.0194 (11)0.0158 (11)−0.0008 (9)0.0089 (9)−0.0038 (8)
C4A0.0153 (10)0.0132 (10)0.0150 (10)0.0004 (8)0.0090 (9)0.0019 (8)
C5A0.0155 (10)0.0135 (10)0.0140 (10)−0.0015 (8)0.0078 (9)−0.0014 (8)
C6A0.0157 (10)0.0135 (10)0.0169 (11)−0.0006 (8)0.0098 (9)−0.0011 (8)
C8A0.0169 (10)0.0131 (10)0.0206 (11)0.0006 (8)0.0106 (10)−0.0011 (8)
N1B0.0173 (9)0.0137 (9)0.0185 (10)0.0014 (7)0.0083 (8)0.0004 (7)
N2B0.0200 (9)0.0117 (9)0.0166 (9)0.0004 (7)0.0090 (8)−0.0016 (7)
N3B0.0204 (10)0.0216 (10)0.0159 (9)0.0004 (8)0.0085 (8)−0.0001 (8)
N7B0.0160 (9)0.0132 (9)0.0178 (10)0.0007 (7)0.0081 (8)0.0006 (7)
N9B0.0195 (10)0.0148 (9)0.0217 (10)−0.0024 (8)0.0106 (9)−0.0054 (8)
C2B0.0183 (11)0.0223 (12)0.0175 (11)0.0008 (9)0.0090 (10)0.0019 (9)
C4B0.0160 (10)0.0168 (11)0.0172 (11)−0.0009 (8)0.0102 (9)−0.0033 (8)
C5B0.0142 (10)0.0140 (10)0.0173 (10)−0.0011 (8)0.0090 (9)0.0002 (8)
C6B0.0155 (10)0.0143 (10)0.0182 (11)−0.0002 (8)0.0110 (9)0.0021 (8)
C8B0.0168 (10)0.0170 (11)0.0210 (11)−0.0003 (9)0.0118 (10)−0.0005 (9)
S20.0199 (3)0.0132 (3)0.0163 (3)0.0007 (2)0.0107 (2)−0.0011 (2)
O50.0289 (9)0.0221 (9)0.0216 (9)0.0104 (7)0.0162 (8)0.0040 (7)
O60.0460 (12)0.0167 (9)0.0509 (12)0.0040 (8)0.0351 (11)0.0044 (8)
O70.0392 (11)0.0308 (10)0.0184 (9)0.0032 (8)0.0171 (8)−0.0005 (7)
O80.0261 (9)0.0396 (11)0.0318 (10)−0.0102 (8)0.0160 (9)−0.0156 (9)
S30.0160 (3)0.0147 (3)0.0138 (3)0.0010 (2)0.0076 (2)−0.0010 (2)
O90.0218 (8)0.0263 (9)0.0206 (9)−0.0052 (7)0.0086 (7)−0.0057 (7)
O100.0217 (8)0.0174 (8)0.0230 (8)0.0054 (7)0.0141 (7)0.0024 (7)
O110.0288 (9)0.0144 (8)0.0202 (9)0.0053 (7)0.0142 (8)0.0019 (6)
O120.0215 (8)0.0173 (8)0.0137 (7)−0.0002 (6)0.0098 (7)−0.0006 (6)
S10.0166 (3)0.0123 (2)0.0142 (3)−0.0005 (2)0.0078 (2)−0.0011 (2)
O10.0240 (8)0.0167 (8)0.0180 (8)0.0063 (7)0.0091 (7)0.0021 (6)
O20.0212 (8)0.0141 (8)0.0258 (9)−0.0035 (6)0.0139 (7)−0.0023 (7)
O30.0252 (8)0.0175 (8)0.0132 (8)0.0008 (6)0.0105 (7)0.0007 (6)
O40.0246 (8)0.0145 (8)0.0208 (8)−0.0061 (7)0.0132 (7)−0.0058 (6)
S2—O71.4553 (19)N2A—H22A0.911 (18)
S2—O81.448 (2)N7A—H7A0.888 (17)
S2—O51.576 (2)N9A—H9A0.89 (2)
S2—O61.447 (2)N1B—C6B1.376 (3)
S3—O101.473 (2)N1B—C2B1.362 (3)
S3—O91.451 (2)N2B—C6B1.296 (3)
S3—O121.4705 (18)N3B—C2B1.308 (3)
S3—O111.5457 (17)N3B—C4B1.358 (3)
S1—O31.4683 (18)N7B—C5B1.379 (3)
S1—O21.485 (2)N7B—C8B1.324 (3)
S1—O11.513 (2)N9B—C8B1.338 (3)
S1—O41.4653 (17)N9B—C4B1.371 (3)
O5—H50.84 (2)N1B—H1B0.880 (18)
O11—H110.91 (3)N2B—H22B0.91 (2)
N1A—C2A1.363 (3)N2B—H21B0.885 (18)
N1A—C6A1.365 (3)N7B—H7B0.916 (17)
N2A—C6A1.311 (3)N9B—H9B0.87 (2)
N3A—C4A1.358 (3)C4A—C5A1.368 (3)
N3A—C2A1.308 (3)C5A—C6A1.411 (3)
N7A—C8A1.331 (3)C2A—H2A0.9300
N7A—C5A1.386 (3)C8A—H8A0.9300
N9A—C4A1.379 (3)C4B—C5B1.379 (3)
N9A—C8A1.328 (3)C5B—C6B1.410 (3)
N1A—H1A0.912 (18)C2B—H2B0.9300
N2A—H21A0.89 (2)C8B—H8B0.9300
O7—S2—O8112.88 (14)C2B—N1B—H1B118.0 (17)
O5—S2—O7102.56 (12)H21B—N2B—H22B121 (2)
O5—S2—O8108.50 (11)C6B—N2B—H21B119.9 (17)
O5—S2—O6107.40 (14)C6B—N2B—H22B119.1 (16)
O6—S2—O8113.41 (13)C8B—N7B—H7B125.1 (17)
O6—S2—O7111.33 (11)C5B—N7B—H7B126.9 (17)
O9—S3—O12112.90 (13)C8B—N9B—H9B120.8 (13)
O9—S3—O11106.15 (11)C4B—N9B—H9B130.1 (14)
O9—S3—O10114.29 (11)N1A—C2A—N3A125.5 (2)
O11—S3—O12105.67 (10)N3A—C4A—C5A126.71 (18)
O10—S3—O11106.70 (12)N9A—C4A—C5A106.83 (18)
O10—S3—O12110.47 (11)N3A—C4A—N9A126.46 (19)
O1—S1—O4108.04 (10)C4A—C5A—C6A119.78 (19)
O3—S1—O4110.72 (10)N7A—C5A—C6A132.96 (19)
O1—S1—O2109.55 (11)N7A—C5A—C4A107.26 (16)
O1—S1—O3106.93 (12)N1A—C6A—C5A112.32 (18)
O2—S1—O4110.76 (12)N1A—C6A—N2A121.42 (18)
O2—S1—O3110.73 (11)N2A—C6A—C5A126.3 (2)
S2—O5—H5114 (2)N7A—C8A—N9A110.04 (18)
S3—O11—H11108.5 (17)N3A—C2A—H2A117.00
C2A—N1A—C6A123.81 (19)N1A—C2A—H2A117.00
C2A—N3A—C4A111.84 (18)N7A—C8A—H8A125.00
C5A—N7A—C8A107.59 (18)N9A—C8A—H8A125.00
C4A—N9A—C8A108.28 (17)N1B—C2B—N3B125.5 (2)
C6A—N1A—H1A113.5 (16)N9B—C4B—C5B106.44 (19)
C2A—N1A—H1A122.7 (16)N3B—C4B—C5B125.8 (2)
H21A—N2A—H22A114 (2)N3B—C4B—N9B127.7 (2)
C6A—N2A—H22A123.1 (16)C4B—C5B—C6B120.1 (2)
C6A—N2A—H21A122.3 (17)N7B—C5B—C4B107.33 (18)
C5A—N7A—H7A123.7 (17)N7B—C5B—C6B132.3 (2)
C8A—N7A—H7A128.6 (17)N1B—C6B—N2B122.07 (18)
C4A—N9A—H9A124.8 (13)N2B—C6B—C5B125.8 (2)
C8A—N9A—H9A126.9 (13)N1B—C6B—C5B112.17 (18)
C2B—N1B—C6B123.68 (19)N7B—C8B—N9B109.8 (2)
C2B—N3B—C4B112.6 (2)N3B—C2B—H2B117.00
C5B—N7B—C8B107.93 (19)N1B—C2B—H2B117.00
C4B—N9B—C8B108.5 (2)N9B—C8B—H8B125.00
C6B—N1B—H1B118.3 (17)N7B—C8B—H8B125.00
D—H···AD—HH···AD···AD—H···A
O5—H5···O4i0.84 (2)1.74 (2)2.580 (2)174 (3)
O11—H11···O1ii0.91 (3)1.56 (2)2.457 (2)166 (4)
N1A—H1A···O2ii0.912 (18)1.92 (2)2.760 (3)151 (3)
N1A—H1A···O6iii0.912 (18)2.58 (2)3.050 (3)112.5 (18)
N1B—H1B···O70.880 (18)2.28 (2)3.027 (3)142 (2)
N1B—H1B···O100.880 (18)2.18 (2)2.870 (3)136 (2)
N2A—H21A···O3iv0.89 (2)1.96 (2)2.796 (3)156 (2)
N2A—H22A···O2ii0.911 (18)2.17 (2)2.884 (3)135 (2)
N2A—H22A···O9iv0.911 (18)2.22 (2)2.814 (3)122 (2)
N2B—H21B···O100.885 (18)2.01 (3)2.760 (3)142 (3)
N2B—H21B···O4v0.885 (18)2.43 (3)2.829 (3)108 (2)
N2B—H22B···O12v0.91 (2)1.94 (2)2.817 (3)162 (2)
N7A—H7A···O3iv0.888 (17)1.96 (2)2.757 (2)149 (2)
N7A—H7A···O11vi0.888 (17)2.42 (2)2.937 (3)117 (2)
N7B—H7B···O1vii0.916 (17)2.28 (2)2.858 (3)121 (2)
N7B—H7B···O12v0.916 (17)1.97 (2)2.763 (3)145 (2)
N9A—H9A···O8viii0.89 (2)1.95 (2)2.767 (3)152.3 (18)
N9B—H9B···O7ix0.87 (2)1.920 (19)2.775 (3)166 (2)
C2A—H2A···O6iii0.932.212.913 (3)131
C2A—H2A···N3Bviii0.932.493.189 (3)132
C8B—H8B···O10ix0.932.482.999 (3)115
C8B—H8B···O1vii0.932.542.983 (3)109
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O5—H5⋯O4i 0.84 (2)1.74 (2)2.580 (2)174 (3)
O11—H11⋯O1ii 0.91 (3)1.56 (2)2.457 (2)166 (4)
N1A—H1A⋯O2ii 0.912 (18)1.92 (2)2.760 (3)151 (3)
N1B—H1B⋯O70.880 (18)2.28 (2)3.027 (3)142 (2)
N1B—H1B⋯O100.880 (18)2.18 (2)2.870 (3)136 (2)
N2A—H21A⋯O3iii 0.89 (2)1.96 (2)2.796 (3)156 (2)
N2A—H22A⋯O2ii 0.911 (18)2.17 (2)2.884 (3)135 (2)
N2A—H22A⋯O9iii 0.911 (18)2.22 (2)2.814 (3)122 (2)
N2B—H21B⋯O100.885 (18)2.01 (3)2.760 (3)142 (3)
N2B—H22B⋯O12iv 0.91 (2)1.94 (2)2.817 (3)162 (2)
N7A—H7A⋯O3iii 0.888 (17)1.96 (2)2.757 (2)149 (2)
N7B—H7B⋯O1v 0.916 (17)2.28 (2)2.858 (3)121 (2)
N7B—H7B⋯O12iv 0.916 (17)1.97 (2)2.763 (3)145 (2)
N9A—H9A⋯O8vi 0.89 (2)1.95 (2)2.767 (3)152.3 (18)
N9B—H9B⋯O7vii 0.87 (2)1.920 (19)2.775 (3)166 (2)
C2A—H2A⋯O6viii 0.932.212.913 (3)131
C2A—H2A⋯N3B vi 0.932.493.189 (3)132

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

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4.  l-Leucinium fluoride monohydrate.

Authors:  Ouahida Zeghouan; Lamia Bendjeddou; Aouatef Cherouana; Slimane Dahaoui; Claude Lecomte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-19
  4 in total

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