| Literature DB >> 22220053 |
Ping Li1, Chun Zhang, Wei Xu.
Abstract
The title compound, C(8)H(12)N(4)O(4), was obtained by cyclization of the two l-asparagine mol-ecules and reveals a crystallographic inversion symmetry, and accordingly the two stereogenic centres are of opposite chirality. Thus, an asymmetric unit comprises a half of a mol-ecule. The mol-ecules are assembled into a three-dimensional hydrogen-bonding network by N-H⋯O hydrogen bonds.Entities:
Year: 2011 PMID: 22220053 PMCID: PMC3247435 DOI: 10.1107/S1600536811043376
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H12N4O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3368 reflections |
| θ = 3.4–27.4° | |
| µ = 0.12 mm−1 | |
| β = 109.76 (3)° | Needle, colourless |
| 0.10 × 0.10 × 0.10 mm | |
| Rigaku R-AXIS RAPID diffractometer | 1166 independent reflections |
| Radiation source: fine-focus sealed tube | 889 reflections with |
| graphite | |
| Detector resolution: 0 pixels mm-1 | θmax = 27.5°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 4836 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1166 reflections | (Δ/σ)max < 0.001 |
| 73 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.0282 (2) | −0.01262 (16) | 0.31172 (9) | 0.0483 (4) | |
| O2 | 0.2805 (3) | 0.29340 (13) | 0.49666 (9) | 0.0482 (3) | |
| N1 | 0.0676 (4) | 0.0393 (2) | 0.14760 (11) | 0.0580 (5) | |
| H1A | −0.0736 | −0.0213 | 0.1141 | 0.070* | |
| H1B | 0.1561 | 0.0889 | 0.1107 | 0.070* | |
| N2 | 0.6588 (2) | −0.04206 (14) | 0.43619 (9) | 0.0316 (3) | |
| H2C | 0.7546 | −0.0678 | 0.3948 | 0.038* | |
| C1 | 0.1482 (3) | 0.05588 (18) | 0.25545 (11) | 0.0320 (3) | |
| C2 | 0.3991 (3) | 0.16430 (17) | 0.30689 (11) | 0.0300 (3) | |
| H2A | 0.3353 | 0.2749 | 0.3022 | 0.036* | |
| H2B | 0.5274 | 0.1554 | 0.2656 | 0.036* | |
| C3 | 0.5568 (3) | 0.12212 (17) | 0.42763 (11) | 0.0289 (3) | |
| H3A | 0.7224 | 0.1923 | 0.4531 | 0.035* | |
| C4 | 0.3792 (3) | 0.15646 (18) | 0.49910 (11) | 0.0307 (3) |
| O1 | 0.0425 (6) | 0.0752 (9) | 0.0326 (6) | −0.0194 (6) | 0.0199 (5) | −0.0009 (5) |
| O2 | 0.0730 (8) | 0.0412 (6) | 0.0366 (6) | 0.0250 (6) | 0.0267 (6) | 0.0066 (5) |
| N1 | 0.0743 (11) | 0.0739 (11) | 0.0270 (7) | −0.0402 (9) | 0.0185 (7) | −0.0063 (7) |
| N2 | 0.0336 (6) | 0.0399 (7) | 0.0266 (6) | 0.0094 (5) | 0.0172 (5) | 0.0028 (5) |
| C1 | 0.0331 (7) | 0.0392 (8) | 0.0267 (7) | 0.0000 (6) | 0.0140 (6) | 0.0016 (6) |
| C2 | 0.0347 (7) | 0.0327 (7) | 0.0261 (7) | −0.0005 (6) | 0.0150 (6) | 0.0024 (6) |
| C3 | 0.0292 (7) | 0.0322 (7) | 0.0268 (7) | −0.0005 (6) | 0.0116 (6) | −0.0003 (6) |
| C4 | 0.0329 (7) | 0.0364 (7) | 0.0227 (7) | 0.0067 (6) | 0.0093 (6) | 0.0003 (6) |
| O1—C1 | 1.2304 (17) | C1—C2 | 1.512 (2) |
| O2—C4 | 1.2392 (17) | C2—C3 | 1.5309 (19) |
| N1—C1 | 1.3182 (19) | C2—H2A | 0.9700 |
| N1—H1A | 0.8599 | C2—H2B | 0.9700 |
| N1—H1B | 0.8599 | C3—C4 | 1.5135 (19) |
| N2—C4i | 1.3219 (18) | C3—H3A | 0.9800 |
| N2—C3 | 1.4502 (18) | C4—N2i | 1.3219 (18) |
| N2—H2C | 0.8599 | ||
| C1—N1—H1A | 119.9 | C1—C2—H2B | 109.1 |
| C1—N1—H1B | 120.1 | C3—C2—H2B | 109.1 |
| H1A—N1—H1B | 120.0 | H2A—C2—H2B | 107.9 |
| C4i—N2—C3 | 127.05 (12) | N2—C3—C4 | 113.51 (11) |
| C4i—N2—H2C | 116.4 | N2—C3—C2 | 110.01 (11) |
| C3—N2—H2C | 116.5 | C4—C3—C2 | 111.46 (11) |
| O1—C1—N1 | 122.47 (14) | N2—C3—H3A | 107.2 |
| O1—C1—C2 | 121.49 (13) | C4—C3—H3A | 107.2 |
| N1—C1—C2 | 116.05 (13) | C2—C3—H3A | 107.2 |
| C1—C2—C3 | 112.30 (12) | O2—C4—N2i | 122.34 (13) |
| C1—C2—H2A | 109.1 | O2—C4—C3 | 118.24 (13) |
| C3—C2—H2A | 109.1 | N2i—C4—C3 | 119.39 (12) |
| H··· | ||||
| N1—H1A···O2ii | 0.86 | 2.12 | 2.9185 (19) | 154. |
| N1—H1B···O2iii | 0.86 | 2.03 | 2.8795 (18) | 167. |
| N2—H2C···O1iv | 0.86 | 2.06 | 2.8509 (17) | 152. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.12 | 2.9185 (19) | 154 |
| N1—H1 | 0.86 | 2.03 | 2.8795 (18) | 167 |
| N2—H2 | 0.86 | 2.06 | 2.8509 (17) | 152 |
Symmetry codes: (i) ; (ii) ; (iii) .