Literature DB >> 22220053

meso-3,6-Dioxopiperazine-2,5-diacet-amide.

Ping Li1, Chun Zhang, Wei Xu.   

Abstract

The title compound, C(8)H(12)N(4)O(4), was obtained by cyclization of the two l-asparagine mol-ecules and reveals a crystallographic inversion symmetry, and accordingly the two stereogenic centres are of opposite chirality. Thus, an asymmetric unit comprises a half of a mol-ecule. The mol-ecules are assembled into a three-dimensional hydrogen-bonding network by N-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22220053      PMCID: PMC3247435          DOI: 10.1107/S1600536811043376

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to coordination polymers, see: Anitha et al. (2005 ▶); Aarthy et al. (2005 ▶); Guenifa et al. (2009 ▶); Moussa Slimane et al. (2009 ▶). For related structures, see: Howes et al. (1983 ▶).

Experimental

Crystal data

C8H12N4O4 M = 228.22 Monoclinic, a = 5.0409 (10) Å b = 8.3178 (17) Å c = 12.900 (3) Å β = 109.76 (3)° V = 509.0 (2) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.10 × 0.10 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.988, T max = 0.988 4836 measured reflections 1166 independent reflections 889 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.098 S = 1.07 1166 reflections 73 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.16 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811043376/kp2350sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043376/kp2350Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811043376/kp2350Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12N4O4F(000) = 240
Mr = 228.22Dx = 1.489 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3368 reflections
a = 5.0409 (10) Åθ = 3.4–27.4°
b = 8.3178 (17) ŵ = 0.12 mm1
c = 12.900 (3) ÅT = 293 K
β = 109.76 (3)°Needle, colourless
V = 509.0 (2) Å30.10 × 0.10 × 0.10 mm
Z = 2
Rigaku R-AXIS RAPID diffractometer1166 independent reflections
Radiation source: fine-focus sealed tube889 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 0 pixels mm-1θmax = 27.5°, θmin = 3.4°
ω scansh = −6→5
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −10→10
Tmin = 0.988, Tmax = 0.988l = −16→16
4836 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0415P)2 + 0.146P] where P = (Fo2 + 2Fc2)/3
1166 reflections(Δ/σ)max < 0.001
73 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.0282 (2)−0.01262 (16)0.31172 (9)0.0483 (4)
O20.2805 (3)0.29340 (13)0.49666 (9)0.0482 (3)
N10.0676 (4)0.0393 (2)0.14760 (11)0.0580 (5)
H1A−0.0736−0.02130.11410.070*
H1B0.15610.08890.11070.070*
N20.6588 (2)−0.04206 (14)0.43619 (9)0.0316 (3)
H2C0.7546−0.06780.39480.038*
C10.1482 (3)0.05588 (18)0.25545 (11)0.0320 (3)
C20.3991 (3)0.16430 (17)0.30689 (11)0.0300 (3)
H2A0.33530.27490.30220.036*
H2B0.52740.15540.26560.036*
C30.5568 (3)0.12212 (17)0.42763 (11)0.0289 (3)
H3A0.72240.19230.45310.035*
C40.3792 (3)0.15646 (18)0.49910 (11)0.0307 (3)
U11U22U33U12U13U23
O10.0425 (6)0.0752 (9)0.0326 (6)−0.0194 (6)0.0199 (5)−0.0009 (5)
O20.0730 (8)0.0412 (6)0.0366 (6)0.0250 (6)0.0267 (6)0.0066 (5)
N10.0743 (11)0.0739 (11)0.0270 (7)−0.0402 (9)0.0185 (7)−0.0063 (7)
N20.0336 (6)0.0399 (7)0.0266 (6)0.0094 (5)0.0172 (5)0.0028 (5)
C10.0331 (7)0.0392 (8)0.0267 (7)0.0000 (6)0.0140 (6)0.0016 (6)
C20.0347 (7)0.0327 (7)0.0261 (7)−0.0005 (6)0.0150 (6)0.0024 (6)
C30.0292 (7)0.0322 (7)0.0268 (7)−0.0005 (6)0.0116 (6)−0.0003 (6)
C40.0329 (7)0.0364 (7)0.0227 (7)0.0067 (6)0.0093 (6)0.0003 (6)
O1—C11.2304 (17)C1—C21.512 (2)
O2—C41.2392 (17)C2—C31.5309 (19)
N1—C11.3182 (19)C2—H2A0.9700
N1—H1A0.8599C2—H2B0.9700
N1—H1B0.8599C3—C41.5135 (19)
N2—C4i1.3219 (18)C3—H3A0.9800
N2—C31.4502 (18)C4—N2i1.3219 (18)
N2—H2C0.8599
C1—N1—H1A119.9C1—C2—H2B109.1
C1—N1—H1B120.1C3—C2—H2B109.1
H1A—N1—H1B120.0H2A—C2—H2B107.9
C4i—N2—C3127.05 (12)N2—C3—C4113.51 (11)
C4i—N2—H2C116.4N2—C3—C2110.01 (11)
C3—N2—H2C116.5C4—C3—C2111.46 (11)
O1—C1—N1122.47 (14)N2—C3—H3A107.2
O1—C1—C2121.49 (13)C4—C3—H3A107.2
N1—C1—C2116.05 (13)C2—C3—H3A107.2
C1—C2—C3112.30 (12)O2—C4—N2i122.34 (13)
C1—C2—H2A109.1O2—C4—C3118.24 (13)
C3—C2—H2A109.1N2i—C4—C3119.39 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2ii0.862.122.9185 (19)154.
N1—H1B···O2iii0.862.032.8795 (18)167.
N2—H2C···O1iv0.862.062.8509 (17)152.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.862.122.9185 (19)154
N1—H1B⋯O2ii0.862.032.8795 (18)167
N2—H2C⋯O1iii0.862.062.8509 (17)152

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  dl-Asparaginium perchlorate.

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3.  dl-Asparaginium nitrate.

Authors:  Nabila Moussa Slimane; Aouatef Cherouana; Lamia Bendjeddou; Slimane Dahaoui; Claude Lecomte
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  3 in total

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