Literature DB >> 23284530

dl-Tyrosinium chloride dihydrate.

Fatiha Guenifa1, Lamia Bendjeddou, Aouatef Cherouana, Slimane Dahaoui, Claude Lecomte.   

Abstract

In the title compound, C(9)H(12)NO(3) (+)·Cl(-)·2H(2)O, the cation has a protonated amino group resulting from proton transfer from chloridric acid. The structure displays double layers parallel to the [010] direction held together by N-H⋯O, N-H⋯Cl, O-H⋯O and O-H⋯Cl hydrogen bonds. These layers are stacked along the c axis at b = 1/2; within each layer, the tyrosinium cations are arranged in an alternating head-to-tail sequence, forming inversion dimers [R(2) (2)(10) motif]. The water mol-ecules allow for the construction of a three-dimensional hydrogen-bonded network formed by centrosymmetric R(6) (6)(28) and R(8) (8)(34) motifs.

Entities:  

Year:  2012        PMID: 23284530      PMCID: PMC3515310          DOI: 10.1107/S1600536812043899

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other examples of organic salts of amino acids, see: Zeghouan et al. (2012 ▶); Guenifa et al. (2009 ▶). For the structure of bis­(l-tyrosinium) sulfate monohydrate, see: Sridhar et al. (2002 ▶). For other examples of amino acids with non-polar side chains, see: Torii & Iitaka (1973 ▶); Harding & Long (1968 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C9H12NO3 +·Cl−·2H2O M = 253.68 Triclinic, a = 5.3330 (2) Å b = 10.9634 (5) Å c = 11.2500 (4) Å α = 113.642 (4)° β = 94.359 (3)° γ = 98.465 (3)° V = 589.34 (5) Å3 Z = 2 Mo Kα radiation μ = 0.33 mm−1 T = 100 K 0.3 × 0.03 × 0.02 mm

Data collection

Oxford Diffraction Xcalibur Sapphire CCD diffractometer 12044 measured reflections 3445 independent reflections 2780 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.084 S = 1.02 3445 reflections 172 parameters 11 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2008 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PARST97 (Nardelli, 1995 ▶), Mercury (Macrae et al., 2006 ▶) and POVRay (Persistence of Vision Team, 2004 ▶)’. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812043899/nk2187sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043899/nk2187Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H12NO3+·Cl·2H2OZ = 2
Mr = 253.68F(000) = 268
Triclinic, P1Dx = 1.43 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.3330 (2) ÅCell parameters from 12044 reflections
b = 10.9634 (5) Åθ = 3.4–30.0°
c = 11.2500 (4) ŵ = 0.33 mm1
α = 113.642 (4)°T = 100 K
β = 94.359 (3)°Needle, colourless
γ = 98.465 (3)°0.3 × 0.03 × 0.02 mm
V = 589.34 (5) Å3
Oxford Diffraction Xcalibur Sapphire CCD diffractometer2780 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
Graphite monochromatorθmax = 30.0°, θmin = 3.4°
ω scansh = −7→7
12044 measured reflectionsk = −15→15
3445 independent reflectionsl = −15→15
Refinement on F211 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.032w = 1/[σ2(Fo2) + (0.0483P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.084(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.43 e Å3
3445 reflectionsΔρmin = −0.30 e Å3
172 parameters
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.26233 (5)0.45517 (3)0.68584 (3)0.01279 (8)
O20.63481 (17)0.90937 (9)0.68369 (9)0.0169 (2)
O10.43456 (17)0.69839 (9)1.18096 (9)0.0162 (2)
O1W0.07015 (18)0.82478 (9)0.34641 (9)0.0165 (2)
H12W−0.008 (3)0.7497 (11)0.3437 (15)0.025*
H11W0.177 (2)0.8037 (15)0.2947 (14)0.025*
O30.40595 (16)0.69671 (9)0.58151 (9)0.01381 (19)
O2W0.7642 (2)0.02475 (10)0.39042 (10)0.0255 (2)
H22W0.832 (3)−0.0447 (13)0.3609 (15)0.038*
H21W0.807 (3)0.0653 (16)0.4715 (9)0.038*
N10.7923 (2)0.58230 (10)0.62048 (11)0.0113 (2)
C50.8819 (2)0.66936 (12)0.94214 (12)0.0130 (2)
H51.00260.61790.90520.016*
C60.7489 (2)0.64160 (12)1.03283 (12)0.0135 (2)
H60.77960.5721.05580.016*
C10.6041 (2)0.77693 (12)0.63928 (12)0.0107 (2)
C70.5693 (2)0.71907 (12)1.08898 (12)0.0116 (2)
C30.9865 (2)0.80241 (12)0.80762 (12)0.0121 (2)
H3A1.15050.77480.81170.015*
H3B1.02060.89970.83370.015*
C90.6553 (2)0.84770 (12)0.96215 (12)0.0122 (2)
H90.62240.91650.93840.015*
C20.8520 (2)0.73226 (12)0.66507 (12)0.0108 (2)
H2A0.97080.75230.61010.013*
C80.5211 (2)0.82194 (12)1.05327 (12)0.0128 (2)
H80.39990.87311.09010.015*
C40.8385 (2)0.77273 (12)0.90528 (11)0.0109 (2)
H3N0.925 (2)0.5502 (14)0.6426 (14)0.013*
H2N0.758 (3)0.5428 (14)0.5303 (12)0.013*
H1N0.657 (2)0.5615 (14)0.6569 (13)0.013*
H10.500 (3)0.6478 (14)1.2082 (15)0.016*
H20.494 (2)0.9367 (14)0.6636 (14)0.016*
U11U22U33U12U13U23
Cl10.01191 (14)0.01584 (14)0.01394 (15)0.00480 (11)0.00313 (10)0.00869 (11)
O20.0146 (4)0.0119 (4)0.0229 (5)0.0042 (4)−0.0028 (4)0.0065 (4)
O10.0190 (5)0.0204 (5)0.0170 (5)0.0102 (4)0.0075 (4)0.0128 (4)
O1W0.0177 (5)0.0145 (4)0.0176 (5)0.0041 (4)0.0055 (4)0.0061 (4)
O30.0111 (4)0.0137 (4)0.0161 (5)0.0032 (3)0.0010 (3)0.0055 (4)
O2W0.0305 (6)0.0247 (5)0.0180 (5)0.0184 (5)−0.0029 (4)0.0022 (4)
N10.0103 (5)0.0130 (5)0.0108 (5)0.0045 (4)0.0012 (4)0.0045 (4)
C50.0127 (5)0.0140 (6)0.0121 (6)0.0066 (5)0.0013 (4)0.0041 (5)
C60.0161 (6)0.0136 (6)0.0128 (6)0.0066 (5)0.0014 (5)0.0064 (5)
C10.0127 (5)0.0131 (5)0.0084 (6)0.0045 (5)0.0031 (4)0.0056 (4)
C70.0113 (5)0.0134 (5)0.0091 (6)0.0018 (4)0.0006 (4)0.0043 (4)
C30.0105 (5)0.0136 (6)0.0115 (6)0.0020 (5)−0.0004 (4)0.0050 (5)
C90.0140 (6)0.0106 (5)0.0126 (6)0.0037 (5)0.0001 (5)0.0053 (5)
C20.0103 (5)0.0120 (5)0.0113 (6)0.0026 (4)0.0016 (4)0.0058 (5)
C80.0133 (6)0.0122 (5)0.0131 (6)0.0059 (5)0.0024 (5)0.0041 (5)
C40.0095 (5)0.0115 (5)0.0087 (6)0.0002 (4)−0.0021 (4)0.0025 (4)
O1—C71.3754 (16)C3—C41.5096 (17)
O2—C11.3117 (17)C4—C91.3961 (16)
O3—C11.2150 (15)C4—C51.3962 (19)
O1—H10.837 (17)C5—C61.3900 (18)
O2—H20.894 (12)C6—C71.3925 (17)
O1W—H11W0.835 (12)C7—C81.390 (2)
O1W—H12W0.854 (14)C8—C91.3882 (18)
O2W—H21W0.834 (9)C2—H2A0.9800
O2W—H22W0.847 (16)C3—H3A0.9700
N1—C21.4887 (18)C3—H3B0.9700
N1—H2N0.920 (12)C5—H50.9300
N1—H1N0.901 (13)C6—H60.9300
N1—H3N0.896 (13)C8—H80.9300
C1—C21.5225 (16)C9—H90.9300
C2—C31.5334 (17)
C7—O1—H1109.9 (11)O1—C7—C8117.48 (10)
C1—O2—H2112.8 (10)C6—C7—C8120.27 (11)
H11W—O1W—H12W105.2 (16)O1—C7—C6122.25 (12)
H21W—O2W—H22W109.8 (16)C7—C8—C9119.46 (11)
H1N—N1—H2N111.9 (13)C4—C9—C8121.56 (13)
C2—N1—H2N108.2 (10)N1—C2—H2A108.00
C2—N1—H3N112.5 (10)C3—C2—H2A108.00
H1N—N1—H3N109.5 (13)C1—C2—H2A108.00
C2—N1—H1N108.3 (10)C2—C3—H3B109.00
H2N—N1—H3N106.6 (14)C4—C3—H3A109.00
O2—C1—O3125.48 (11)H3A—C3—H3B108.00
O2—C1—C2111.91 (10)C4—C3—H3B109.00
O3—C1—C2122.60 (12)C2—C3—H3A109.00
N1—C2—C3110.77 (11)C4—C5—H5119.00
C1—C2—C3115.02 (10)C6—C5—H5119.00
N1—C2—C1107.62 (10)C7—C6—H6120.00
C2—C3—C4114.94 (10)C5—C6—H6120.00
C3—C4—C9121.35 (12)C7—C8—H8120.00
C3—C4—C5120.83 (10)C9—C8—H8120.00
C5—C4—C9117.82 (11)C8—C9—H9119.00
C4—C5—C6121.52 (11)C4—C9—H9119.00
C5—C6—C7119.36 (13)
O2—C1—C2—N1175.77 (10)C9—C4—C5—C6−0.28 (18)
O2—C1—C2—C351.79 (15)C3—C4—C9—C8−179.15 (11)
O3—C1—C2—N1−5.77 (16)C5—C4—C9—C80.53 (18)
O3—C1—C2—C3−129.75 (13)C4—C5—C6—C7−0.41 (18)
N1—C2—C3—C4−57.63 (13)C5—C6—C7—O1−178.84 (11)
C1—C2—C3—C464.66 (16)C5—C6—C7—C80.88 (18)
C2—C3—C4—C594.83 (14)O1—C7—C8—C9179.09 (11)
C2—C3—C4—C9−85.50 (15)C6—C7—C8—C9−0.64 (18)
C3—C4—C5—C6179.40 (11)C7—C8—C9—C4−0.07 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl10.90 (1)2.36 (1)3.2326 (12)162 (1)
N1—H2N···Cl1i0.92 (1)2.44 (1)3.2872 (12)154 (1)
N1—H2N···O3i0.92 (1)2.40 (2)2.9574 (15)119 (1)
N1—H3N···Cl1ii0.90 (1)2.32 (1)3.2151 (12)176 (1)
O1—H1···Cl1iii0.84 (2)2.36 (2)3.1858 (11)169 (1)
O2—H2···O2Wi0.89 (1)1.64 (1)2.5319 (15)174 (2)
O1W—H11W···O1iv0.84 (1)2.10 (1)2.9044 (13)162 (2)
O1W—H12W···Cl1v0.85 (1)2.33 (1)3.1784 (11)172 (2)
O2W—H21W···O1Wi0.83 (1)1.91 (1)2.7429 (14)173 (2)
O2W—H22W···O1Wvi0.85 (2)2.02 (2)2.8318 (15)161 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯Cl10.90 (1)2.36 (1)3.2326 (12)162 (1)
N1—H2N⋯Cl1i 0.92 (1)2.44 (1)3.2872 (12)154 (1)
N1—H2N⋯O3i 0.92 (1)2.40 (2)2.9574 (15)119 (1)
N1—H3N⋯Cl1ii 0.90 (1)2.32 (1)3.2151 (12)176 (1)
O1—H1⋯Cl1iii 0.84 (2)2.36 (2)3.1858 (11)169 (1)
O2—H2⋯O2W i 0.89 (1)1.64 (1)2.5319 (15)174 (2)
O1W—H11W⋯O1iv 0.84 (1)2.10 (1)2.9044 (13)162 (2)
O1W—H12W⋯Cl1v 0.85 (1)2.33 (1)3.1784 (11)172 (2)
O2W—H21W⋯O1W i 0.83 (1)1.91 (1)2.7429 (14)173 (2)
O2W—H22W⋯O1W vi 0.85 (2)2.02 (2)2.8318 (15)161 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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