| Literature DB >> 21523101 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
The title hydrated quinoline derivative, C(11)H(9)NO(3)·2H(2)O, crystallizes as a zwitterion in which the quinoline N atom is protonated. The quinoline ring is essentially planar, with a maximum deviation of 0.017 (2) Å. An intra-molecular N-H⋯O hydrogen bond between the protonated N atom and the O atom of the carboxyl-ate group in the zwitterion forms an S(5) ring motif. In the crystal, the zwitterions are connected into inversion dimers via pairs of N-H⋯O and C-H⋯O hydrogen bonds with R(2) (2)(4) and R(1) (2)(6) motifs. The water mol-ecules are connected via O-H⋯O hydrogen bonds, forming supra-molecular chains along the c axis. Furthermore, the chains and the dimers are connected via O-H⋯O hydrogen bonds, forming ladder-like supra-molecular ribbons along the c axis.Entities:
Year: 2011 PMID: 21523101 PMCID: PMC3051487 DOI: 10.1107/S1600536811001541
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H9NO3·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1896 reflections |
| θ = 3.0–29.6° | |
| µ = 0.11 mm−1 | |
| β = 115.978 (8)° | Block, colourless |
| 0.23 × 0.13 × 0.09 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 3176 independent reflections |
| Radiation source: fine-focus sealed tube | 2123 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 8743 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3176 reflections | (Δ/σ)max = 0.001 |
| 155 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | −0.5092 (2) | 0.92971 (5) | 0.52984 (13) | 0.0215 (3) | |
| O2 | −0.2912 (2) | 0.83869 (5) | 0.60229 (13) | 0.0215 (3) | |
| O3 | 0.6369 (2) | 0.91915 (5) | 0.88880 (13) | 0.0209 (3) | |
| N1 | −0.0747 (2) | 0.99667 (6) | 0.64651 (14) | 0.0164 (3) | |
| H1 | −0.2351 | 1.0154 | 0.5860 | 0.020* | |
| C1 | −0.0569 (3) | 0.93435 (7) | 0.66638 (17) | 0.0167 (3) | |
| C2 | 0.1785 (3) | 0.90548 (7) | 0.74844 (17) | 0.0179 (3) | |
| H2A | 0.1879 | 0.8620 | 0.7624 | 0.022* | |
| C3 | 0.4006 (3) | 0.94219 (7) | 0.80976 (17) | 0.0172 (3) | |
| C4 | 0.3838 (3) | 1.00878 (7) | 0.78808 (17) | 0.0165 (3) | |
| C5 | 0.6021 (3) | 1.04912 (7) | 0.84392 (18) | 0.0196 (3) | |
| H5A | 0.7657 | 1.0325 | 0.8995 | 0.024* | |
| C6 | 0.5718 (3) | 1.11260 (8) | 0.81587 (18) | 0.0215 (4) | |
| H6A | 0.7157 | 1.1388 | 0.8513 | 0.026* | |
| C7 | 0.3247 (3) | 1.13855 (7) | 0.73390 (18) | 0.0213 (3) | |
| H7A | 0.3077 | 1.1818 | 0.7171 | 0.026* | |
| C8 | 0.1083 (3) | 1.10119 (7) | 0.67844 (17) | 0.0192 (3) | |
| H8A | −0.0542 | 1.1187 | 0.6248 | 0.023* | |
| C9 | 0.1385 (3) | 1.03559 (7) | 0.70470 (17) | 0.0163 (3) | |
| C10 | −0.3094 (3) | 0.89756 (7) | 0.59208 (17) | 0.0165 (3) | |
| C11 | 0.6630 (3) | 0.85142 (7) | 0.91289 (19) | 0.0229 (4) | |
| H11A | 0.8409 | 0.8411 | 0.9726 | 0.034* | |
| H11B | 0.6036 | 0.8302 | 0.8198 | 0.034* | |
| H11C | 0.5617 | 0.8382 | 0.9622 | 0.034* | |
| O1W | 0.0737 (2) | 0.75591 (5) | 0.16811 (14) | 0.0248 (3) | |
| H2 | 0.1349 | 0.7589 | 0.2622 | 0.037* | |
| H3 | −0.0434 | 0.7242 | 0.1451 | 0.037* | |
| O2W | 0.2854 (2) | 0.76156 (6) | 0.47021 (14) | 0.0283 (3) | |
| H4 | 0.4092 | 0.7895 | 0.5074 | 0.042* | |
| H5 | 0.2167 | 0.7580 | 0.5317 | 0.042* |
| O1 | 0.0150 (5) | 0.0235 (5) | 0.0221 (7) | 0.0015 (4) | 0.0045 (4) | 0.0012 (4) |
| O2 | 0.0189 (5) | 0.0199 (5) | 0.0235 (6) | −0.0012 (4) | 0.0073 (5) | 0.0017 (4) |
| O3 | 0.0162 (5) | 0.0211 (5) | 0.0204 (6) | 0.0024 (4) | 0.0034 (4) | 0.0024 (4) |
| N1 | 0.0153 (6) | 0.0185 (6) | 0.0135 (7) | 0.0000 (5) | 0.0046 (5) | −0.0006 (5) |
| C1 | 0.0171 (7) | 0.0205 (7) | 0.0137 (8) | −0.0010 (6) | 0.0077 (6) | −0.0016 (6) |
| C2 | 0.0172 (7) | 0.0189 (7) | 0.0168 (8) | 0.0004 (6) | 0.0066 (6) | −0.0002 (6) |
| C3 | 0.0152 (7) | 0.0244 (7) | 0.0118 (8) | 0.0026 (6) | 0.0056 (6) | 0.0004 (6) |
| C4 | 0.0154 (7) | 0.0216 (7) | 0.0126 (7) | 0.0001 (6) | 0.0061 (5) | −0.0011 (6) |
| C5 | 0.0160 (7) | 0.0253 (7) | 0.0153 (8) | −0.0016 (6) | 0.0050 (6) | −0.0024 (6) |
| C6 | 0.0201 (7) | 0.0245 (7) | 0.0196 (9) | −0.0049 (6) | 0.0083 (6) | −0.0049 (6) |
| C7 | 0.0236 (8) | 0.0191 (7) | 0.0207 (9) | −0.0016 (6) | 0.0094 (6) | −0.0019 (6) |
| C8 | 0.0199 (7) | 0.0209 (7) | 0.0168 (8) | 0.0010 (6) | 0.0080 (6) | 0.0000 (6) |
| C9 | 0.0167 (7) | 0.0199 (7) | 0.0122 (7) | −0.0005 (6) | 0.0064 (6) | −0.0011 (6) |
| C10 | 0.0159 (7) | 0.0201 (7) | 0.0134 (8) | −0.0008 (5) | 0.0061 (6) | −0.0004 (6) |
| C11 | 0.0214 (8) | 0.0216 (7) | 0.0228 (9) | 0.0042 (6) | 0.0070 (6) | 0.0047 (6) |
| O1W | 0.0256 (6) | 0.0228 (5) | 0.0244 (7) | −0.0035 (5) | 0.0093 (5) | 0.0004 (5) |
| O2W | 0.0256 (6) | 0.0335 (6) | 0.0255 (7) | −0.0098 (5) | 0.0110 (5) | −0.0068 (5) |
| O1—C10 | 1.2461 (18) | C5—H5A | 0.9300 |
| O2—C10 | 1.2528 (18) | C6—C7 | 1.409 (2) |
| O3—C3 | 1.3337 (18) | C6—H6A | 0.9300 |
| O3—C11 | 1.4530 (18) | C7—C8 | 1.373 (2) |
| N1—C1 | 1.3332 (19) | C7—H7A | 0.9300 |
| N1—C9 | 1.3800 (19) | C8—C9 | 1.412 (2) |
| N1—H1 | 0.9437 | C8—H8A | 0.9300 |
| C1—C2 | 1.385 (2) | C11—H11A | 0.9600 |
| C1—C10 | 1.528 (2) | C11—H11B | 0.9600 |
| C2—C3 | 1.391 (2) | C11—H11C | 0.9600 |
| C2—H2A | 0.9300 | O1W—H2 | 0.8586 |
| C3—C4 | 1.425 (2) | O1W—H3 | 0.9083 |
| C4—C9 | 1.411 (2) | O2W—H4 | 0.8759 |
| C4—C5 | 1.419 (2) | O2W—H5 | 0.8743 |
| C5—C6 | 1.370 (2) | ||
| C3—O3—C11 | 117.76 (12) | C7—C6—H6A | 119.7 |
| C1—N1—C9 | 122.17 (13) | C8—C7—C6 | 121.28 (14) |
| C1—N1—H1 | 120.2 | C8—C7—H7A | 119.4 |
| C9—N1—H1 | 117.5 | C6—C7—H7A | 119.4 |
| N1—C1—C2 | 121.24 (14) | C7—C8—C9 | 118.44 (14) |
| N1—C1—C10 | 115.95 (13) | C7—C8—H8A | 120.8 |
| C2—C1—C10 | 122.80 (13) | C9—C8—H8A | 120.8 |
| C1—C2—C3 | 119.30 (14) | N1—C9—C4 | 119.14 (13) |
| C1—C2—H2A | 120.3 | N1—C9—C8 | 119.69 (13) |
| C3—C2—H2A | 120.3 | C4—C9—C8 | 121.16 (14) |
| O3—C3—C2 | 124.18 (14) | O1—C10—O2 | 127.72 (14) |
| O3—C3—C4 | 115.95 (13) | O1—C10—C1 | 116.14 (13) |
| C2—C3—C4 | 119.86 (13) | O2—C10—C1 | 116.14 (13) |
| C9—C4—C5 | 118.55 (14) | O3—C11—H11A | 109.5 |
| C9—C4—C3 | 118.28 (13) | O3—C11—H11B | 109.5 |
| C5—C4—C3 | 123.16 (14) | H11A—C11—H11B | 109.5 |
| C6—C5—C4 | 119.94 (14) | O3—C11—H11C | 109.5 |
| C6—C5—H5A | 120.0 | H11A—C11—H11C | 109.5 |
| C4—C5—H5A | 120.0 | H11B—C11—H11C | 109.5 |
| C5—C6—C7 | 120.61 (15) | H2—O1W—H3 | 103.8 |
| C5—C6—H6A | 119.7 | H4—O2W—H5 | 106.9 |
| C9—N1—C1—C2 | 0.7 (2) | C5—C6—C7—C8 | −0.8 (3) |
| C9—N1—C1—C10 | −178.65 (13) | C6—C7—C8—C9 | −0.3 (2) |
| N1—C1—C2—C3 | −0.8 (2) | C1—N1—C9—C4 | 0.0 (2) |
| C10—C1—C2—C3 | 178.50 (15) | C1—N1—C9—C8 | 179.18 (15) |
| C11—O3—C3—C2 | −0.4 (2) | C5—C4—C9—N1 | 178.33 (14) |
| C11—O3—C3—C4 | −179.67 (14) | C3—C4—C9—N1 | −0.5 (2) |
| C1—C2—C3—O3 | −179.06 (15) | C5—C4—C9—C8 | −0.9 (2) |
| C1—C2—C3—C4 | 0.2 (2) | C3—C4—C9—C8 | −179.68 (15) |
| O3—C3—C4—C9 | 179.73 (14) | C7—C8—C9—N1 | −178.06 (15) |
| C2—C3—C4—C9 | 0.4 (2) | C7—C8—C9—C4 | 1.1 (2) |
| O3—C3—C4—C5 | 1.0 (2) | N1—C1—C10—O1 | −5.3 (2) |
| C2—C3—C4—C5 | −178.38 (15) | C2—C1—C10—O1 | 175.42 (15) |
| C9—C4—C5—C6 | −0.3 (2) | N1—C1—C10—O2 | 175.44 (14) |
| C3—C4—C5—C6 | 178.51 (16) | C2—C1—C10—O2 | −3.9 (2) |
| C4—C5—C6—C7 | 1.1 (3) |
| H··· | ||||
| N1—H1···O1 | 0.94 | 2.31 | 2.6638 (18) | 102 |
| N1—H1···O1i | 0.94 | 1.84 | 2.7608 (18) | 164 |
| O1W—H2···O2W | 0.86 | 1.89 | 2.7478 (19) | 176 |
| O1W—H3···O2ii | 0.91 | 1.86 | 2.7685 (16) | 177 |
| O2W—H4···O2iii | 0.88 | 1.88 | 2.7498 (18) | 171 |
| O2W—H5···O1Wiv | 0.87 | 1.91 | 2.7860 (19) | 176 |
| C6—H6A···O1Wv | 0.93 | 2.59 | 3.418 (2) | 149 |
| C8—H8A···O1i | 0.93 | 2.53 | 3.229 (2) | 132 |
| C11—H11A···O1Wvi | 0.96 | 2.58 | 3.317 (2) | 134 |
| C11—H11B···O2iii | 0.96 | 2.53 | 3.272 (2) | 134 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.94 | 1.84 | 2.7608 (18) | 164 |
| O1 | 0.86 | 1.89 | 2.7478 (19) | 176 |
| O1 | 0.91 | 1.86 | 2.7685 (16) | 177 |
| O2 | 0.88 | 1.88 | 2.7498 (18) | 171 |
| O2 | 0.87 | 1.91 | 2.7860 (19) | 176 |
| C6—H6 | 0.93 | 2.59 | 3.418 (2) | 149 |
| C8—H8 | 0.93 | 2.53 | 3.229 (2) | 132 |
| C11—H11 | 0.96 | 2.58 | 3.317 (2) | 134 |
| C11—H11 | 0.96 | 2.53 | 3.272 (2) | 134 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .