Literature DB >> 21523101

4-Meth-oxy-quinolinium-2-carboxyl-ate dihydrate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

The title hydrated quinoline derivative, C(11)H(9)NO(3)·2H(2)O, crystallizes as a zwitterion in which the quinoline N atom is protonated. The quinoline ring is essentially planar, with a maximum deviation of 0.017 (2) Å. An intra-molecular N-H⋯O hydrogen bond between the protonated N atom and the O atom of the carboxyl-ate group in the zwitterion forms an S(5) ring motif. In the crystal, the zwitterions are connected into inversion dimers via pairs of N-H⋯O and C-H⋯O hydrogen bonds with R(2) (2)(4) and R(1) (2)(6) motifs. The water mol-ecules are connected via O-H⋯O hydrogen bonds, forming supra-molecular chains along the c axis. Furthermore, the chains and the dimers are connected via O-H⋯O hydrogen bonds, forming ladder-like supra-molecular ribbons along the c axis.

Entities:  

Year:  2011        PMID: 21523101      PMCID: PMC3051487          DOI: 10.1107/S1600536811001541

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and the biological activity of quinoline derivatives, see: Morimoto et al. (1991 ▶); Michael (1997 ▶); Markees et al. (1970 ▶); Campbell et al. (1988 ▶); Zhou et al. (1989 ▶); Elman et al. (1985 ▶); Loh et al. (2010 ▶); Sasaki et al. (1998 ▶); Reux et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H9NO3·2H2O M = 239.22 Monoclinic, a = 5.7674 (11) Å b = 21.196 (4) Å c = 10.0993 (15) Å β = 115.978 (8)° V = 1109.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.23 × 0.13 × 0.09 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.974, T max = 0.990 8743 measured reflections 3176 independent reflections 2123 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.140 S = 1.01 3176 reflections 155 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001541/is2654sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001541/is2654Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9NO3·2H2OF(000) = 504
Mr = 239.22Dx = 1.432 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1896 reflections
a = 5.7674 (11) Åθ = 3.0–29.6°
b = 21.196 (4) ŵ = 0.11 mm1
c = 10.0993 (15) ÅT = 100 K
β = 115.978 (8)°Block, colourless
V = 1109.9 (3) Å30.23 × 0.13 × 0.09 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer3176 independent reflections
Radiation source: fine-focus sealed tube2123 reflections with I > 2σ(I)
graphiteRint = 0.058
φ and ω scansθmax = 30.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −7→8
Tmin = 0.974, Tmax = 0.990k = −29→29
8743 measured reflectionsl = −10→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0701P)2] where P = (Fo2 + 2Fc2)/3
3176 reflections(Δ/σ)max = 0.001
155 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.34 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.5092 (2)0.92971 (5)0.52984 (13)0.0215 (3)
O2−0.2912 (2)0.83869 (5)0.60229 (13)0.0215 (3)
O30.6369 (2)0.91915 (5)0.88880 (13)0.0209 (3)
N1−0.0747 (2)0.99667 (6)0.64651 (14)0.0164 (3)
H1−0.23511.01540.58600.020*
C1−0.0569 (3)0.93435 (7)0.66638 (17)0.0167 (3)
C20.1785 (3)0.90548 (7)0.74844 (17)0.0179 (3)
H2A0.18790.86200.76240.022*
C30.4006 (3)0.94219 (7)0.80976 (17)0.0172 (3)
C40.3838 (3)1.00878 (7)0.78808 (17)0.0165 (3)
C50.6021 (3)1.04912 (7)0.84392 (18)0.0196 (3)
H5A0.76571.03250.89950.024*
C60.5718 (3)1.11260 (8)0.81587 (18)0.0215 (4)
H6A0.71571.13880.85130.026*
C70.3247 (3)1.13855 (7)0.73390 (18)0.0213 (3)
H7A0.30771.18180.71710.026*
C80.1083 (3)1.10119 (7)0.67844 (17)0.0192 (3)
H8A−0.05421.11870.62480.023*
C90.1385 (3)1.03559 (7)0.70470 (17)0.0163 (3)
C10−0.3094 (3)0.89756 (7)0.59208 (17)0.0165 (3)
C110.6630 (3)0.85142 (7)0.91289 (19)0.0229 (4)
H11A0.84090.84110.97260.034*
H11B0.60360.83020.81980.034*
H11C0.56170.83820.96220.034*
O1W0.0737 (2)0.75591 (5)0.16811 (14)0.0248 (3)
H20.13490.75890.26220.037*
H3−0.04340.72420.14510.037*
O2W0.2854 (2)0.76156 (6)0.47021 (14)0.0283 (3)
H40.40920.78950.50740.042*
H50.21670.75800.53170.042*
U11U22U33U12U13U23
O10.0150 (5)0.0235 (5)0.0221 (7)0.0015 (4)0.0045 (4)0.0012 (4)
O20.0189 (5)0.0199 (5)0.0235 (6)−0.0012 (4)0.0073 (5)0.0017 (4)
O30.0162 (5)0.0211 (5)0.0204 (6)0.0024 (4)0.0034 (4)0.0024 (4)
N10.0153 (6)0.0185 (6)0.0135 (7)0.0000 (5)0.0046 (5)−0.0006 (5)
C10.0171 (7)0.0205 (7)0.0137 (8)−0.0010 (6)0.0077 (6)−0.0016 (6)
C20.0172 (7)0.0189 (7)0.0168 (8)0.0004 (6)0.0066 (6)−0.0002 (6)
C30.0152 (7)0.0244 (7)0.0118 (8)0.0026 (6)0.0056 (6)0.0004 (6)
C40.0154 (7)0.0216 (7)0.0126 (7)0.0001 (6)0.0061 (5)−0.0011 (6)
C50.0160 (7)0.0253 (7)0.0153 (8)−0.0016 (6)0.0050 (6)−0.0024 (6)
C60.0201 (7)0.0245 (7)0.0196 (9)−0.0049 (6)0.0083 (6)−0.0049 (6)
C70.0236 (8)0.0191 (7)0.0207 (9)−0.0016 (6)0.0094 (6)−0.0019 (6)
C80.0199 (7)0.0209 (7)0.0168 (8)0.0010 (6)0.0080 (6)0.0000 (6)
C90.0167 (7)0.0199 (7)0.0122 (7)−0.0005 (6)0.0064 (6)−0.0011 (6)
C100.0159 (7)0.0201 (7)0.0134 (8)−0.0008 (5)0.0061 (6)−0.0004 (6)
C110.0214 (8)0.0216 (7)0.0228 (9)0.0042 (6)0.0070 (6)0.0047 (6)
O1W0.0256 (6)0.0228 (5)0.0244 (7)−0.0035 (5)0.0093 (5)0.0004 (5)
O2W0.0256 (6)0.0335 (6)0.0255 (7)−0.0098 (5)0.0110 (5)−0.0068 (5)
O1—C101.2461 (18)C5—H5A0.9300
O2—C101.2528 (18)C6—C71.409 (2)
O3—C31.3337 (18)C6—H6A0.9300
O3—C111.4530 (18)C7—C81.373 (2)
N1—C11.3332 (19)C7—H7A0.9300
N1—C91.3800 (19)C8—C91.412 (2)
N1—H10.9437C8—H8A0.9300
C1—C21.385 (2)C11—H11A0.9600
C1—C101.528 (2)C11—H11B0.9600
C2—C31.391 (2)C11—H11C0.9600
C2—H2A0.9300O1W—H20.8586
C3—C41.425 (2)O1W—H30.9083
C4—C91.411 (2)O2W—H40.8759
C4—C51.419 (2)O2W—H50.8743
C5—C61.370 (2)
C3—O3—C11117.76 (12)C7—C6—H6A119.7
C1—N1—C9122.17 (13)C8—C7—C6121.28 (14)
C1—N1—H1120.2C8—C7—H7A119.4
C9—N1—H1117.5C6—C7—H7A119.4
N1—C1—C2121.24 (14)C7—C8—C9118.44 (14)
N1—C1—C10115.95 (13)C7—C8—H8A120.8
C2—C1—C10122.80 (13)C9—C8—H8A120.8
C1—C2—C3119.30 (14)N1—C9—C4119.14 (13)
C1—C2—H2A120.3N1—C9—C8119.69 (13)
C3—C2—H2A120.3C4—C9—C8121.16 (14)
O3—C3—C2124.18 (14)O1—C10—O2127.72 (14)
O3—C3—C4115.95 (13)O1—C10—C1116.14 (13)
C2—C3—C4119.86 (13)O2—C10—C1116.14 (13)
C9—C4—C5118.55 (14)O3—C11—H11A109.5
C9—C4—C3118.28 (13)O3—C11—H11B109.5
C5—C4—C3123.16 (14)H11A—C11—H11B109.5
C6—C5—C4119.94 (14)O3—C11—H11C109.5
C6—C5—H5A120.0H11A—C11—H11C109.5
C4—C5—H5A120.0H11B—C11—H11C109.5
C5—C6—C7120.61 (15)H2—O1W—H3103.8
C5—C6—H6A119.7H4—O2W—H5106.9
C9—N1—C1—C20.7 (2)C5—C6—C7—C8−0.8 (3)
C9—N1—C1—C10−178.65 (13)C6—C7—C8—C9−0.3 (2)
N1—C1—C2—C3−0.8 (2)C1—N1—C9—C40.0 (2)
C10—C1—C2—C3178.50 (15)C1—N1—C9—C8179.18 (15)
C11—O3—C3—C2−0.4 (2)C5—C4—C9—N1178.33 (14)
C11—O3—C3—C4−179.67 (14)C3—C4—C9—N1−0.5 (2)
C1—C2—C3—O3−179.06 (15)C5—C4—C9—C8−0.9 (2)
C1—C2—C3—C40.2 (2)C3—C4—C9—C8−179.68 (15)
O3—C3—C4—C9179.73 (14)C7—C8—C9—N1−178.06 (15)
C2—C3—C4—C90.4 (2)C7—C8—C9—C41.1 (2)
O3—C3—C4—C51.0 (2)N1—C1—C10—O1−5.3 (2)
C2—C3—C4—C5−178.38 (15)C2—C1—C10—O1175.42 (15)
C9—C4—C5—C6−0.3 (2)N1—C1—C10—O2175.44 (14)
C3—C4—C5—C6178.51 (16)C2—C1—C10—O2−3.9 (2)
C4—C5—C6—C71.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.942.312.6638 (18)102
N1—H1···O1i0.941.842.7608 (18)164
O1W—H2···O2W0.861.892.7478 (19)176
O1W—H3···O2ii0.911.862.7685 (16)177
O2W—H4···O2iii0.881.882.7498 (18)171
O2W—H5···O1Wiv0.871.912.7860 (19)176
C6—H6A···O1Wv0.932.593.418 (2)149
C8—H8A···O1i0.932.533.229 (2)132
C11—H11A···O1Wvi0.962.583.317 (2)134
C11—H11B···O2iii0.962.533.272 (2)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.941.842.7608 (18)164
O1W—H2⋯O2W0.861.892.7478 (19)176
O1W—H3⋯O2ii0.911.862.7685 (16)177
O2W—H4⋯O2iii0.881.882.7498 (18)171
O2W—H5⋯O1Wiv0.871.912.7860 (19)176
C6—H6A⋯O1Wv0.932.593.418 (2)149
C8—H8A⋯O1i0.932.533.229 (2)132
C11—H11A⋯O1Wvi0.962.583.317 (2)134
C11—H11B⋯O2iii0.962.533.272 (2)134

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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