Literature DB >> 21754728

2-[(E)-(2,4-Dihy-droxy-benzyl-idene)aza-nium-yl]-3-phenyl-propano-ate.

Hadariah Bahron, Fatimatuzzahraa Mohd Fadzel, Karimah Kassim, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

The title compound, C(16)H(15)NO(4), exists as a zwitterion in the solid state, with the carb-oxy-lic acid group being deprotonated and the imine N atom being protonated. The mol-ecule adopts an E configuration about the C=N double bond. The dihedral angle between the benzene rings is 46.34 (4)°. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, adjacent mol-ecules are connected by inter-molecular O-H⋯O and C-H⋯O hydrogen bonds, forming supra-molecular ribbons along the a axis.

Entities:  

Year:  2011        PMID: 21754728      PMCID: PMC3120434          DOI: 10.1107/S1600536811016655

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of Schiff bases and their applications, see: Dolaz et al. (2009 ▶); Kumar et al. (2010 ▶); Qiao et al. (2011 ▶); Sauri et al. (2009 ▶); Tamami & Ghasemi (2011 ▶). For related structures, see: Bahron et al. (2010 ▶); Hemamalini & Fun (2011 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H15NO4 M = 285.29 Monoclinic, a = 9.3943 (1) Å b = 6.8946 (1) Å c = 20.7251 (3) Å β = 92.065 (1)° V = 1341.49 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.34 × 0.27 × 0.17 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.966, T max = 0.982 22479 measured reflections 6007 independent reflections 4783 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.125 S = 1.03 6007 reflections 202 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.56 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016655/rz2592sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016655/rz2592Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016655/rz2592Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15NO4F(000) = 600
Mr = 285.29Dx = 1.413 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9091 reflections
a = 9.3943 (1) Åθ = 3.0–35.3°
b = 6.8946 (1) ŵ = 0.10 mm1
c = 20.7251 (3) ÅT = 100 K
β = 92.065 (1)°Block, orange
V = 1341.49 (3) Å30.34 × 0.27 × 0.17 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer6007 independent reflections
Radiation source: fine-focus sealed tube4783 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 35.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −15→13
Tmin = 0.966, Tmax = 0.982k = −8→11
22479 measured reflectionsl = −33→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0674P)2 + 0.2835P] where P = (Fo2 + 2Fc2)/3
6007 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.60361 (6)0.80079 (9)0.04375 (3)0.01400 (12)
O20.97519 (6)0.33854 (10)0.05402 (3)0.01685 (13)
O30.03702 (7)0.98745 (10)0.07713 (4)0.01988 (14)
O40.26610 (7)1.04016 (9)0.05323 (3)0.01783 (13)
N10.34885 (7)0.69321 (10)0.08580 (3)0.01219 (12)
C10.33058 (10)0.53563 (14)0.25232 (4)0.01942 (16)
H1A0.39540.64010.25900.023*
C20.35367 (11)0.36077 (15)0.28493 (5)0.02434 (19)
H2A0.43370.34730.31390.029*
C30.26067 (12)0.20648 (14)0.27537 (5)0.02416 (19)
H3A0.27700.08750.29750.029*
C40.14316 (11)0.22715 (13)0.23307 (5)0.02018 (17)
H4A0.07920.12190.22620.024*
C50.11937 (9)0.40174 (13)0.20089 (4)0.01695 (15)
H5A0.03860.41500.17230.020*
C60.21269 (9)0.55797 (12)0.20999 (4)0.01422 (14)
C70.18457 (9)0.74664 (12)0.17511 (4)0.01563 (15)
H7A0.25050.84620.19330.019*
H7B0.08630.78910.18360.019*
C80.20180 (8)0.73766 (12)0.10126 (4)0.01250 (13)
H8A0.13590.63810.08170.015*
C90.40809 (8)0.52254 (11)0.09102 (4)0.01214 (13)
H9A0.34920.41730.10290.015*
C100.55370 (8)0.48144 (11)0.08037 (4)0.01121 (13)
C110.65246 (8)0.61982 (11)0.05775 (4)0.01132 (13)
C120.79342 (8)0.56952 (12)0.04987 (4)0.01286 (14)
H12A0.85910.66340.03540.015*
C130.83916 (8)0.37933 (12)0.06334 (4)0.01261 (14)
C140.74286 (8)0.23932 (12)0.08580 (4)0.01396 (14)
H14A0.77420.11130.09550.017*
C150.60318 (8)0.29109 (12)0.09343 (4)0.01367 (14)
H15A0.53810.19650.10790.016*
C160.16518 (8)0.93989 (12)0.07349 (4)0.01381 (14)
H1O10.6599 (16)0.855 (2)0.0171 (7)0.030 (4)*
H1N10.3969 (16)0.791 (2)0.0723 (7)0.033 (4)*
H1O20.999 (2)0.196 (3)0.0635 (8)0.052 (5)*
U11U22U33U12U13U23
O10.0131 (2)0.0096 (2)0.0195 (3)0.00209 (19)0.0036 (2)0.0038 (2)
O20.0113 (2)0.0159 (3)0.0236 (3)0.0048 (2)0.0034 (2)0.0040 (2)
O30.0129 (3)0.0170 (3)0.0299 (3)0.0054 (2)0.0033 (2)0.0064 (2)
O40.0165 (3)0.0150 (3)0.0223 (3)0.0018 (2)0.0054 (2)0.0063 (2)
N10.0109 (3)0.0108 (3)0.0150 (3)0.0021 (2)0.0019 (2)0.0017 (2)
C10.0211 (4)0.0189 (4)0.0182 (4)0.0017 (3)−0.0009 (3)0.0003 (3)
C20.0292 (5)0.0244 (4)0.0191 (4)0.0075 (4)−0.0044 (3)0.0027 (3)
C30.0371 (5)0.0170 (4)0.0186 (4)0.0083 (4)0.0039 (4)0.0047 (3)
C40.0267 (4)0.0136 (3)0.0207 (4)0.0006 (3)0.0076 (3)0.0013 (3)
C50.0179 (4)0.0155 (3)0.0176 (4)0.0011 (3)0.0031 (3)0.0011 (3)
C60.0165 (3)0.0127 (3)0.0137 (3)0.0024 (3)0.0043 (3)0.0011 (3)
C70.0192 (4)0.0125 (3)0.0156 (3)0.0028 (3)0.0048 (3)0.0018 (3)
C80.0104 (3)0.0113 (3)0.0160 (3)0.0027 (2)0.0022 (2)0.0023 (2)
C90.0118 (3)0.0110 (3)0.0137 (3)0.0016 (2)0.0013 (2)0.0010 (2)
C100.0102 (3)0.0100 (3)0.0135 (3)0.0013 (2)0.0013 (2)0.0009 (2)
C110.0118 (3)0.0098 (3)0.0123 (3)0.0016 (2)0.0009 (2)0.0002 (2)
C120.0108 (3)0.0117 (3)0.0162 (3)0.0016 (2)0.0015 (2)0.0011 (3)
C130.0114 (3)0.0129 (3)0.0136 (3)0.0029 (2)0.0003 (2)0.0007 (2)
C140.0129 (3)0.0108 (3)0.0182 (3)0.0027 (2)0.0014 (3)0.0020 (3)
C150.0125 (3)0.0107 (3)0.0179 (3)0.0013 (2)0.0021 (2)0.0022 (3)
C160.0136 (3)0.0122 (3)0.0157 (3)0.0028 (2)0.0017 (3)0.0029 (3)
O1—C111.3572 (9)C5—H5A0.9500
O1—H1O10.863 (15)C6—C71.5068 (12)
O2—C131.3293 (10)C7—C81.5461 (12)
O2—H1O21.025 (19)C7—H7A0.9900
O3—C161.2527 (10)C7—H7B0.9900
O4—C161.2577 (10)C8—C161.5425 (11)
N1—C91.3045 (10)C8—H8A1.0000
N1—C81.4617 (10)C9—C101.4220 (11)
N1—H1N10.864 (16)C9—H9A0.9500
C1—C21.3952 (13)C10—C151.4152 (11)
C1—C61.3965 (12)C10—C111.4220 (11)
C1—H1A0.9500C11—C121.3842 (11)
C2—C31.3863 (16)C12—C131.4048 (11)
C2—H2A0.9500C12—H12A0.9500
C3—C41.3921 (15)C13—C141.4133 (11)
C3—H3A0.9500C14—C151.3745 (11)
C4—C51.3903 (13)C14—H14A0.9500
C4—H4A0.9500C15—H15A0.9500
C5—C61.3973 (12)
C11—O1—H1O1108.9 (10)N1—C8—C7111.03 (6)
C13—O2—H1O2112.1 (10)C16—C8—C7107.65 (6)
C9—N1—C8125.08 (7)N1—C8—H8A110.1
C9—N1—H1N1120.3 (10)C16—C8—H8A110.1
C8—N1—H1N1114.6 (10)C7—C8—H8A110.1
C2—C1—C6120.37 (9)N1—C9—C10125.23 (7)
C2—C1—H1A119.8N1—C9—H9A117.4
C6—C1—H1A119.8C10—C9—H9A117.4
C3—C2—C1120.51 (9)C15—C10—C9117.79 (7)
C3—C2—H2A119.7C15—C10—C11118.13 (7)
C1—C2—H2A119.7C9—C10—C11124.07 (7)
C2—C3—C4119.53 (9)O1—C11—C12121.51 (7)
C2—C3—H3A120.2O1—C11—C10117.88 (7)
C4—C3—H3A120.2C12—C11—C10120.60 (7)
C5—C4—C3120.06 (9)C11—C12—C13119.84 (7)
C5—C4—H4A120.0C11—C12—H12A120.1
C3—C4—H4A120.0C13—C12—H12A120.1
C4—C5—C6120.90 (8)O2—C13—C12117.22 (7)
C4—C5—H5A119.6O2—C13—C14122.24 (7)
C6—C5—H5A119.6C12—C13—C14120.54 (7)
C1—C6—C5118.64 (8)C15—C14—C13119.06 (7)
C1—C6—C7121.20 (8)C15—C14—H14A120.5
C5—C6—C7120.17 (8)C13—C14—H14A120.5
C6—C7—C8114.68 (7)C14—C15—C10121.81 (7)
C6—C7—H7A108.6C14—C15—H15A119.1
C8—C7—H7A108.6C10—C15—H15A119.1
C6—C7—H7B108.6O3—C16—O4127.87 (8)
C8—C7—H7B108.6O3—C16—C8114.59 (7)
H7A—C7—H7B107.6O4—C16—C8117.43 (7)
N1—C8—C16107.91 (6)
C6—C1—C2—C30.53 (15)C15—C10—C11—O1178.38 (7)
C1—C2—C3—C4−0.27 (15)C9—C10—C11—O1−1.95 (12)
C2—C3—C4—C5−0.22 (15)C15—C10—C11—C12−1.04 (11)
C3—C4—C5—C60.45 (14)C9—C10—C11—C12178.63 (8)
C2—C1—C6—C5−0.29 (13)O1—C11—C12—C13−178.40 (7)
C2—C1—C6—C7179.02 (8)C10—C11—C12—C131.00 (12)
C4—C5—C6—C1−0.19 (13)C11—C12—C13—O2179.06 (7)
C4—C5—C6—C7−179.51 (8)C11—C12—C13—C14−0.93 (12)
C1—C6—C7—C8112.09 (9)O2—C13—C14—C15−179.07 (8)
C5—C6—C7—C8−68.61 (10)C12—C13—C14—C150.92 (12)
C9—N1—C8—C16−166.85 (7)C13—C14—C15—C10−0.99 (13)
C9—N1—C8—C775.39 (10)C9—C10—C15—C14−178.64 (8)
C6—C7—C8—N1−63.66 (9)C11—C10—C15—C141.05 (12)
C6—C7—C8—C16178.43 (7)N1—C8—C16—O3172.58 (7)
C8—N1—C9—C10−175.36 (7)C7—C8—C16—O3−67.51 (9)
N1—C9—C10—C15174.78 (8)N1—C8—C16—O4−10.87 (10)
N1—C9—C10—C11−4.90 (13)C7—C8—C16—O4109.04 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O4i0.863 (15)1.790 (14)2.6302 (9)163.9 (15)
N1—H1N1···O10.864 (14)2.051 (15)2.6810 (9)129.1 (12)
O2—H1O2···O3ii1.03 (2)1.51 (2)2.5310 (10)179 (2)
C5—H5A···O2iii0.952.563.3155 (10)137
C12—H12A···O2iv0.952.463.1781 (10)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O4i0.863 (15)1.790 (14)2.6302 (9)163.9 (15)
N1—H1N1⋯O10.864 (14)2.051 (15)2.6810 (9)129.1 (12)
O2—H1O2⋯O3ii1.03 (2)1.51 (2)2.5310 (10)179 (2)
C5—H5A⋯O2iii0.952.563.3155 (10)137
C12—H12A⋯O2iv0.952.463.1781 (10)132

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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