Literature DB >> 23476259

2,3-Diamino-pyridinium 4-meth-oxy-quinoline-2-carboxyl-ate.

Kaliyaperumal Thanigaimani1, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

In the 4-meth-oxy-quinoline-2-carboxyl-ate anion of the title salt, C5H8N3(+)·C11H8NO3(-), the dihedral angle between the quinoline ring system and the carboxyl-ate group is 16.54 (15)°. In the crystal, the cations and anions are linked via N-H⋯O and N-H⋯N hydrogen bonds, forming a centrosymmetric 2 + 2 aggregate with R2(2)(9) and R4(2)(8) ring motifs. These units are further connected via N-H⋯O hydrogen bonds into a layer parallel to the bc plane. The crystal structure is also stabilized by weak C-H⋯O hydrogen bonds and π-π inter-actions between pyridine rings [centroid-centroid distance = 3.5886 (8) Å] and between pyridine and benzene rings [centroid-centroid distance = 3.6328 (8) Å].

Entities:  

Year:  2012        PMID: 23476259      PMCID: PMC3589023          DOI: 10.1107/S1600536812047642

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶). For background to and the biological activity of quinoline derivatives, see: Morimoto et al. (1991 ▶); Markees et al. (1970 ▶). For a related structure, see: Hemamalini & Fun (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H8N3 +·C11H8NO3 M = 312.33 Monoclinic, a = 12.4338 (12) Å b = 7.7462 (7) Å c = 19.4626 (14) Å β = 128.806 (4)° V = 1460.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.24 × 0.21 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.976, T max = 0.989 17919 measured reflections 4820 independent reflections 3806 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.131 S = 1.02 4820 reflections 229 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.54 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812047642/is5215sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047642/is5215Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812047642/is5215Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8N3+·C11H8NO3F(000) = 656
Mr = 312.33Dx = 1.420 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4575 reflections
a = 12.4338 (12) Åθ = 2.7–31.3°
b = 7.7462 (7) ŵ = 0.10 mm1
c = 19.4626 (14) ÅT = 100 K
β = 128.806 (4)°Block, brown
V = 1460.8 (2) Å30.24 × 0.21 × 0.11 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer4820 independent reflections
Radiation source: fine-focus sealed tube3806 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
φ and ω scansθmax = 31.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→18
Tmin = 0.976, Tmax = 0.989k = −11→11
17919 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0667P)2 + 0.4735P] where P = (Fo2 + 2Fc2)/3
4820 reflections(Δ/σ)max < 0.001
229 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.05026 (9)0.82361 (12)0.41897 (6)0.02018 (19)
O20.57301 (9)0.98701 (12)0.31851 (6)0.02111 (19)
O30.59315 (10)0.93999 (14)0.43875 (7)0.0273 (2)
N10.82921 (10)0.75610 (13)0.51232 (6)0.0165 (2)
C10.96096 (11)0.69323 (14)0.55691 (7)0.0157 (2)
C21.02304 (12)0.60542 (16)0.63772 (8)0.0195 (2)
H2A0.97200.58690.65830.023*
C31.15663 (13)0.54699 (16)0.68650 (8)0.0214 (2)
H3A1.19690.48740.74030.026*
C41.23432 (12)0.57458 (16)0.65750 (8)0.0222 (2)
H4A1.32690.53470.69210.027*
C51.17713 (12)0.65876 (16)0.57956 (8)0.0193 (2)
H5A1.23030.67720.56050.023*
C61.03897 (11)0.71840 (15)0.52728 (7)0.0159 (2)
C70.97352 (11)0.80680 (15)0.44581 (8)0.0156 (2)
C80.84151 (11)0.87022 (15)0.40172 (7)0.0156 (2)
H8A0.79610.93000.34740.019*
C90.77543 (11)0.84423 (15)0.43910 (7)0.0151 (2)
C100.63500 (12)0.92902 (15)0.39471 (8)0.0167 (2)
C110.98637 (14)0.90182 (19)0.33460 (9)0.0239 (3)
H11A1.05350.90920.32390.036*
H11B0.95451.01800.33390.036*
H11C0.90750.83160.28840.036*
N20.69022 (11)0.60036 (14)0.56941 (7)0.0186 (2)
N30.61802 (11)0.86007 (14)0.58672 (7)0.0187 (2)
N40.53416 (12)0.68143 (16)0.67353 (8)0.0242 (2)
C120.63244 (11)0.68819 (15)0.59866 (7)0.0156 (2)
C130.59474 (11)0.59571 (16)0.64456 (7)0.0169 (2)
C140.62055 (13)0.41992 (16)0.65640 (8)0.0205 (2)
H14A0.59780.35570.68730.025*
C150.67973 (13)0.33474 (17)0.62363 (9)0.0230 (3)
H15A0.69540.21380.63160.028*
C160.71448 (13)0.42631 (16)0.58045 (8)0.0222 (2)
H16A0.75500.37020.55830.027*
H10.5578 (18)0.916 (2)0.5893 (11)0.026 (4)*
H20.6256 (18)0.899 (2)0.5461 (11)0.025 (4)*
H30.7185 (18)0.663 (2)0.5421 (12)0.032 (5)*
H40.5352 (19)0.630 (2)0.7151 (12)0.032 (5)*
H50.525 (2)0.795 (3)0.6708 (13)0.041 (5)*
U11U22U33U12U13U23
O10.0191 (4)0.0250 (4)0.0228 (4)0.0005 (3)0.0162 (4)0.0014 (3)
O20.0206 (4)0.0255 (5)0.0171 (4)0.0057 (3)0.0118 (3)0.0008 (3)
O30.0298 (5)0.0345 (5)0.0303 (5)0.0146 (4)0.0251 (4)0.0128 (4)
N10.0184 (4)0.0158 (4)0.0181 (4)0.0026 (3)0.0128 (4)0.0007 (3)
C10.0179 (5)0.0139 (5)0.0172 (5)0.0012 (4)0.0119 (4)−0.0007 (4)
C20.0222 (5)0.0188 (5)0.0184 (5)0.0021 (4)0.0132 (5)0.0010 (4)
C30.0217 (5)0.0193 (6)0.0169 (5)0.0013 (4)0.0090 (4)0.0009 (4)
C40.0161 (5)0.0196 (6)0.0229 (6)0.0010 (4)0.0083 (5)−0.0010 (4)
C50.0158 (5)0.0183 (5)0.0226 (6)−0.0006 (4)0.0114 (4)−0.0026 (4)
C60.0159 (5)0.0139 (5)0.0180 (5)−0.0003 (4)0.0107 (4)−0.0024 (4)
C70.0167 (5)0.0151 (5)0.0189 (5)−0.0021 (4)0.0130 (4)−0.0028 (4)
C80.0174 (5)0.0151 (5)0.0165 (5)0.0003 (4)0.0117 (4)−0.0007 (4)
C90.0171 (5)0.0142 (5)0.0165 (5)0.0013 (4)0.0117 (4)−0.0009 (4)
C100.0182 (5)0.0155 (5)0.0197 (5)0.0020 (4)0.0136 (4)0.0005 (4)
C110.0258 (6)0.0296 (7)0.0236 (6)0.0015 (5)0.0191 (5)0.0027 (5)
N20.0216 (5)0.0197 (5)0.0207 (5)0.0027 (4)0.0162 (4)0.0017 (4)
N30.0231 (5)0.0176 (5)0.0226 (5)0.0035 (4)0.0178 (4)0.0037 (4)
N40.0329 (6)0.0248 (6)0.0300 (6)0.0098 (4)0.0271 (5)0.0095 (4)
C120.0149 (4)0.0183 (5)0.0146 (5)0.0021 (4)0.0097 (4)0.0010 (4)
C130.0158 (5)0.0205 (5)0.0159 (5)0.0015 (4)0.0107 (4)0.0023 (4)
C140.0218 (5)0.0195 (5)0.0231 (6)0.0013 (4)0.0154 (5)0.0038 (4)
C150.0254 (6)0.0174 (5)0.0260 (6)0.0029 (4)0.0160 (5)0.0017 (5)
C160.0263 (6)0.0197 (6)0.0237 (6)0.0049 (4)0.0172 (5)0.0004 (5)
O1—C71.3509 (13)C9—C101.5284 (15)
O1—C111.4351 (15)C11—H11A0.9800
O2—C101.2501 (14)C11—H11B0.9800
O3—C101.2537 (14)C11—H11C0.9800
N1—C91.3227 (15)N2—C121.3475 (15)
N1—C11.3755 (14)N2—C161.3688 (16)
C1—C21.4179 (16)N2—H30.936 (18)
C1—C61.4185 (16)N3—C121.3441 (15)
C2—C31.3743 (17)N3—H10.893 (18)
C2—H2A0.9500N3—H20.905 (17)
C3—C41.4073 (19)N4—C131.3634 (16)
C3—H3A0.9500N4—H40.893 (18)
C4—C51.3712 (18)N4—H50.88 (2)
C4—H4A0.9500C12—C131.4337 (16)
C5—C61.4174 (15)C13—C141.3848 (17)
C5—H5A0.9500C14—C151.4041 (18)
C6—C71.4242 (16)C14—H14A0.9500
C7—C81.3808 (15)C15—C161.3606 (19)
C8—C91.4121 (16)C15—H15A0.9500
C8—H8A0.9500C16—H16A0.9500
C7—O1—C11117.67 (9)O3—C10—C9117.34 (10)
C9—N1—C1117.42 (10)O1—C11—H11A109.5
N1—C1—C2118.35 (10)O1—C11—H11B109.5
N1—C1—C6122.84 (10)H11A—C11—H11B109.5
C2—C1—C6118.76 (10)O1—C11—H11C109.5
C3—C2—C1120.42 (11)H11A—C11—H11C109.5
C3—C2—H2A119.8H11B—C11—H11C109.5
C1—C2—H2A119.8C12—N2—C16123.66 (11)
C2—C3—C4120.61 (11)C12—N2—H3117.9 (11)
C2—C3—H3A119.7C16—N2—H3118.4 (11)
C4—C3—H3A119.7C12—N3—H1119.7 (11)
C5—C4—C3120.36 (11)C12—N3—H2113.9 (11)
C5—C4—H4A119.8H1—N3—H2116.0 (16)
C3—C4—H4A119.8C13—N4—H4117.5 (12)
C4—C5—C6120.27 (11)C13—N4—H5122.8 (13)
C4—C5—H5A119.9H4—N4—H5115.1 (17)
C6—C5—H5A119.9N3—C12—N2118.40 (11)
C5—C6—C1119.56 (11)N3—C12—C13122.85 (11)
C5—C6—C7123.07 (11)N2—C12—C13118.68 (11)
C1—C6—C7117.36 (10)N4—C13—C14122.73 (11)
O1—C7—C8125.32 (11)N4—C13—C12119.69 (11)
O1—C7—C6115.32 (10)C14—C13—C12117.57 (11)
C8—C7—C6119.35 (10)C13—C14—C15121.28 (11)
C7—C8—C9118.56 (10)C13—C14—H14A119.4
C7—C8—H8A120.7C15—C14—H14A119.4
C9—C8—H8A120.7C16—C15—C14119.68 (12)
N1—C9—C8124.34 (10)C16—C15—H15A120.2
N1—C9—C10117.26 (10)C14—C15—H15A120.2
C8—C9—C10118.36 (10)C15—C16—N2119.11 (11)
O2—C10—O3125.12 (11)C15—C16—H16A120.4
O2—C10—C9117.50 (10)N2—C16—H16A120.4
C9—N1—C1—C2177.07 (11)C6—C7—C8—C9−0.28 (16)
C9—N1—C1—C6−0.38 (16)C1—N1—C9—C83.32 (17)
N1—C1—C2—C3−177.15 (11)C1—N1—C9—C10−174.09 (10)
C6—C1—C2—C30.41 (18)C7—C8—C9—N1−3.03 (18)
C1—C2—C3—C40.56 (19)C7—C8—C9—C10174.35 (10)
C2—C3—C4—C5−0.68 (19)N1—C9—C10—O2−168.15 (11)
C3—C4—C5—C6−0.19 (19)C8—C9—C10—O214.27 (16)
C4—C5—C6—C11.15 (17)N1—C9—C10—O314.14 (16)
C4—C5—C6—C7179.93 (11)C8—C9—C10—O3−163.43 (11)
N1—C1—C6—C5176.19 (11)C16—N2—C12—N3177.71 (11)
C2—C1—C6—C5−1.25 (17)C16—N2—C12—C130.46 (17)
N1—C1—C6—C7−2.65 (16)N3—C12—C13—N43.90 (17)
C2—C1—C6—C7179.90 (11)N2—C12—C13—N4−178.98 (11)
C11—O1—C7—C8−5.09 (17)N3—C12—C13—C14−176.96 (11)
C11—O1—C7—C6176.10 (10)N2—C12—C13—C140.16 (16)
C5—C6—C7—O12.97 (16)N4—C13—C14—C15178.25 (12)
C1—C6—C7—O1−178.23 (10)C12—C13—C14—C15−0.86 (18)
C5—C6—C7—C8−175.92 (11)C13—C14—C15—C160.96 (19)
C1—C6—C7—C82.88 (16)C14—C15—C16—N2−0.34 (19)
O1—C7—C8—C9−179.05 (11)C12—N2—C16—C15−0.37 (19)
D—H···AD—HH···AD···AD—H···A
N3—H2···O30.91 (2)1.890 (19)2.7670 (18)162.8 (19)
N2—H3···N10.94 (2)1.94 (3)2.843 (2)162.5 (19)
N3—H1···O3i0.89 (2)1.94 (2)2.812 (2)163.4 (16)
N4—H4···O2ii0.893 (18)1.978 (19)2.8617 (15)169.8 (17)
N4—H5···O2i0.88 (2)2.17 (3)2.9419 (18)146 (3)
C4—H4A···O2iii0.952.453.3529 (15)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H2⋯O30.91 (2)1.890 (19)2.7670 (18)162.8 (19)
N2—H3⋯N10.94 (2)1.94 (3)2.843 (2)162.5 (19)
N3—H1⋯O3i 0.89 (2)1.94 (2)2.812 (2)163.4 (16)
N4—H4⋯O2ii 0.893 (18)1.978 (19)2.8617 (15)169.8 (17)
N4—H5⋯O2i 0.88 (2)2.17 (3)2.9419 (18)146 (3)
C4—H4A⋯O2iii 0.952.453.3529 (15)158

Symmetry codes: (i) ; (ii) ; (iii) .

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4.  Structure validation in chemical crystallography.

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