Literature DB >> 21515765

Complete genome sequence of the nitrogen-fixing and rhizosphere-associated bacterium Pseudomonas stutzeri strain DSM4166.

Haiying Yu1, Menglong Yuan, Wei Lu, Jian Yang, Shuxian Dai, Qin Li, Zhimin Yang, Jie Dong, Lilian Sun, Zhiping Deng, Wei Zhang, Ming Chen, Shuzhen Ping, Yunlei Han, Yuhua Zhan, Yongliang Yan, Qi Jin, Min Lin.   

Abstract

We present here the analysis of the whole-genome sequence of Pseudomonas stutzeri strain DSM4166, a diazotrophic isolate from the rhizosphere of a Sorghum nutans cultivar. To our knowledge, this is the second genome to be sequenced for P. stutzeri. The availability and analysis of the genome provide insight into the evolution of the nitrogen fixation property and identification of rhizosphere competence traits required in interactions with host plants.

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Year:  2011        PMID： 21515765      PMCID： PMC3133286          DOI： 10.1128/JB.05039-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

Review 1.  The causes of Pseudomonas diversity.

Authors:  A J Spiers; A Buckling; P B Rainey
Journal:  Microbiology       Date:  2000-10       Impact factor: 2.777

2.  Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence.

Authors:  Y Anzai; H Kim; J Y Park; H Wakabayashi; H Oyaizu
Journal:  Int J Syst Evol Microbiol       Date:  2000-07       Impact factor: 2.747

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

Review 4.  Biology of Pseudomonas stutzeri.

Authors:  Jorge Lalucat; Antoni Bennasar; Rafael Bosch; Elena García-Valdés; Norberto J Palleroni
Journal:  Microbiol Mol Biol Rev       Date:  2006-06       Impact factor: 11.056

5.  Grouping of phenol hydroxylase and catechol 2,3-dioxygenase genes among phenol- and p-cresol-degrading Pseudomonas species and biotypes.

Authors:  Merike Merimaa; Eeva Heinaru; Merit Liivak; Eve Vedler; Ain Heinaru
Journal:  Arch Microbiol       Date:  2006-08-12       Impact factor: 2.552

6.  Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species.

Authors:  Aina Maria Cladera; Antonio Bennasar; Maria Barceló; Jorge Lalucat; Elena García-Valdés
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

7.  Evaluation of different phenol hydroxylase-possessing phenol-degrading pseudomonads by kinetic parameters.

Authors:  Signe Viggor; Eeva Heinaru; Allan Künnapas; Ain Heinaru
Journal:  Biodegradation       Date:  2008-02-19       Impact factor: 3.909

8.  Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501.

Authors:  Yongliang Yan; Jian Yang; Yuetan Dou; Ming Chen; Shuzhen Ping; Junping Peng; Wei Lu; Wei Zhang; Ziying Yao; Hongquan Li; Wei Liu; Sheng He; Lizhao Geng; Xiaobing Zhang; Fan Yang; Haiying Yu; Yuhua Zhan; Danhua Li; Zhanglin Lin; Yiping Wang; Claudine Elmerich; Min Lin; Qi Jin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-21       Impact factor: 11.205

9.  Degradation of phenol and toxicity of phenolic compounds: a comparison of cold-tolerant Arthrobacter sp. and mesophilic Pseudomonas putida.

Authors:  Rosa Margesin; Philipp Bergauer; Silvia Gander
Journal:  Extremophiles       Date:  2004-02-11       Impact factor: 2.395

10.  Polyphasic characterization of Pseudomonas stutzeri CLN100 which simultaneously degrades chloro- and methylaromatics: a new genomovar within the species.

Authors:  Elena García-Valdés; María M Castillo; Antonio Bennasar; Caterina Guasp; Aina M Cladera; Rafael Bosch; Karl H Engesser; Jorge Lalucat
Journal:  Syst Appl Microbiol       Date:  2003-09       Impact factor: 4.022
  10 in total
  24 in total

1.  Genome sequence of Pseudomonas stutzeri SDM-LAC, a typical strain for studying the molecular mechanism of lactate utilization.

Authors:  Tianyi Jiang; Chao Gao; Fei Su; Wen Zhang; Chunhui Hu; Peipei Dou; Zhaojuan Zheng; Fei Tao; Cuiqing Ma; Ping Xu
Journal:  J Bacteriol       Date:  2012-02       Impact factor: 3.490

2.  Complete genome sequence of the naphthalene-degrading bacterium Pseudomonas stutzeri AN10 (CCUG 29243).

Authors:  Isabel Brunet-Galmés; Antonio Busquets; Arantxa Peña; Margarita Gomila; Balbina Nogales; Elena García-Valdés; Jorge Lalucat; Antonio Bennasar; Rafael Bosch
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

3.  Genome sequence of Pseudomonas stutzeri strain JM300 (DSM 10701), a soil isolate and model organism for natural transformation.

Authors:  Antonio Busquets; Arantxa Peña; Margarita Gomila; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Jorge Lalucat; Antoni Bennasar
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

4.  The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501.

Authors:  Yuhua Zhan; Yongliang Yan; Zhiping Deng; Ming Chen; Wei Lu; Chao Lu; Liguo Shang; Zhimin Yang; Wei Zhang; Wei Wang; Yun Li; Qi Ke; Jiasi Lu; Yuquan Xu; Liwen Zhang; Zhihong Xie; Qi Cheng; Claudine Elmerich; Min Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-12       Impact factor: 11.205

5.  Genome sequences of Pseudomonas luteola XLDN4-9 and Pseudomonas stutzeri XLDN-R, two efficient carbazole-degrading strains.

Authors:  Xiaorui Liu; Zhonghui Gai; Fei Tao; Hao Yu; Hongzhi Tang; Ping Xu
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

6.  Draft genome of Pseudomonas stutzeri strain ZoBell (CCUG 16156), a marine isolate and model organism for denitrification studies.

Authors:  Arantxa Peña; Antonio Busquets; Margarita Gomila; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Jorge Lalucat; Antonio Bennasar
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

7.  Genome sequence of the moderately halotolerant, arsenite-oxidizing bacterium Pseudomonas stutzeri TS44.

Authors:  Xiangyang Li; Jing Gong; Yao Hu; Lin Cai; Laurel Johnstone; Gregor Grass; Christopher Rensing; Gejiao Wang
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

8.  Draft Genome of Pseudomonas stutzeri Strain NF13, a Nitrogen Fixer Isolated from the Galapagos Rift Hydrothermal Vent.

Authors:  Arantxa Peña; Antonio Busquets; Margarita Gomila; Joan Mayol; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Antonio Bennasar; Jorge Lalucat
Journal:  Genome Announc       Date:  2013-03-21

9.  Engineering Pseudomonas protegens Pf-5 for nitrogen fixation and its application to improve plant growth under nitrogen-deficient conditions.

Authors:  Lorena Setten; Gabriela Soto; Matteo Mozzicafreddo; Ana Romina Fox; Christian Lisi; Massimiliano Cuccioloni; Mauro Angeletti; Elba Pagano; Antonio Díaz-Paleo; Nicolás Daniel Ayub
Journal:  PLoS One       Date:  2013-05-13       Impact factor: 3.240

10.  Draft Genome of the Nitrogen-Fixing Bacterium Pseudomonas stutzeri Strain KOS6 Isolated from Industrial Hydrocarbon Sludge.

Authors:  Tatiana V Grigoryeva; Aleksandr V Laikov; Rimma P Naumova; Aleksandr I Manolov; Andrey K Larin; Irina Y Karpova; Tatiana A Semashko; Dmitry G Alexeev; Elena S Kostryukova; Rudolf Müller; Vadim M Govorun
Journal:  Genome Announc       Date:  2013-01-31
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