Literature DB >> 23144395

Complete genome sequence of the naphthalene-degrading bacterium Pseudomonas stutzeri AN10 (CCUG 29243).

Isabel Brunet-Galmés1, Antonio Busquets, Arantxa Peña, Margarita Gomila, Balbina Nogales, Elena García-Valdés, Jorge Lalucat, Antonio Bennasar, Rafael Bosch.   

Abstract

Pseudomonas stutzeri AN10 (CCUG 29243) can be considered a model strain for aerobic naphthalene degradation. We report the complete genome sequence of this bacterium. Its 4.71-Mb chromosome provides insights into other biodegradative capabilities of strain AN10 (i.e., benzoate catabolism) and suggests a high number of horizontal gene transfer events.

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Year:  2012        PMID： 23144395      PMCID： PMC3497477          DOI： 10.1128/JB.01753-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  18 in total

1.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

2.  Genome sequence of Pseudomonas stutzeri strain JM300 (DSM 10701), a soil isolate and model organism for natural transformation.

Authors:  Antonio Busquets; Arantxa Peña; Margarita Gomila; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Jorge Lalucat; Antoni Bennasar
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

3.  Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10.

Authors:  R Bosch; E García-Valdés; E R Moore
Journal:  Gene       Date:  1999-08-05       Impact factor: 3.688

4.  NahW, a novel, inducible salicylate hydroxylase involved in mineralization of naphthalene by Pseudomonas stutzeri AN10.

Authors:  R Bosch; E R Moore; E García-Valdés; D H Pieper
Journal:  J Bacteriol       Date:  1999-04       Impact factor: 3.490

5.  Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10.

Authors:  R Bosch; E García-Valdés; E R Moore
Journal:  Gene       Date:  2000-03-07       Impact factor: 3.688

6.  The native Pseudomonas stutzeri strain Q chromosomal integron can capture and express cassette-associated genes.

Authors:  Nicholas V Coleman; Andrew J Holmes
Journal:  Microbiology       Date:  2005-06       Impact factor: 2.777

7.  Comparative biochemical and genetic analysis of naphthalene degradation among Pseudomonas stutzeri strains.

Authors:  R A Rosselló-Mora; J Lalucat; E García-Valdés
Journal:  Appl Environ Microbiol       Date:  1994-03       Impact factor: 4.792

8.  Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501.

Authors:  Yongliang Yan; Jian Yang; Yuetan Dou; Ming Chen; Shuzhen Ping; Junping Peng; Wei Lu; Wei Zhang; Ziying Yao; Hongquan Li; Wei Liu; Sheng He; Lizhao Geng; Xiaobing Zhang; Fan Yang; Haiying Yu; Yuhua Zhan; Danhua Li; Zhanglin Lin; Yiping Wang; Claudine Elmerich; Min Lin; Qi Jin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-21       Impact factor: 11.205

9.  ISfinder: the reference centre for bacterial insertion sequences.

Authors:  P Siguier; J Perochon; L Lestrade; J Mahillon; M Chandler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  KAAS: an automatic genome annotation and pathway reconstruction server.

Authors:  Yuki Moriya; Masumi Itoh; Shujiro Okuda; Akiyasu C Yoshizawa; Minoru Kanehisa
Journal:  Nucleic Acids Res       Date:  2007-05-25       Impact factor: 16.971
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  21 in total

1.  Decolorization and biodegradation of textile di-azo dye Acid Blue 113 by Pseudomonas stutzeri AK6.

Authors:  Anjali U Joshi; Ankit T Hinsu; Rohitkumar J Kotadiya; Jalpa K Rank; Kavan N Andharia; Ramesh K Kothari
Journal:  3 Biotech       Date:  2020-04-25       Impact factor: 2.406

2.  Isolation and characterization of the novel Pseudomonas stutzeri bacteriophage 8P.

Authors:  Xinwu Liu; Zhou Feng; Xiangyu Fan; Yong Nie; Xiao-Lei Wu
Journal:  Arch Virol       Date:  2021-01-03       Impact factor: 2.574

3.  Complete sequence of pOZ176, a 500-kilobase IncP-2 plasmid encoding IMP-9-mediated carbapenem resistance, from outbreak isolate Pseudomonas aeruginosa 96.

Authors:  Jianhui Xiong; David C Alexander; Jennifer H Ma; Maxime Déraspe; Donald E Low; Frances B Jamieson; Paul H Roy
Journal:  Antimicrob Agents Chemother       Date:  2013-05-28       Impact factor: 5.191

4.  Use of Substrate-Induced Gene Expression in Metagenomic Analysis of an Aromatic Hydrocarbon-Contaminated Soil.

Authors:  Matthew J Meier; E Suzanne Paterson; Iain B Lambert
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792

5.  Whole-cell MALDI-TOF mass spectrometry and multilocus sequence analysis in the discrimination of Pseudomonas stutzeri populations: three novel genomovars.

Authors:  Claudia Scotta; Margarita Gomila; Magdalena Mulet; Jorge Lalucat; Elena García-Valdés
Journal:  Microb Ecol       Date:  2013-06-04       Impact factor: 4.552

6.  A novel temperate phage, vB_PstS-pAN, induced from the naphthalene-degrading bacterium Pseudomonas stutzeri AN10.

Authors:  Zhou Feng; Xinwu Liu; Miaoxiao Wang; Yong Nie; Xiao-Lei Wu
Journal:  Arch Virol       Date:  2021-05-18       Impact factor: 2.685

7.  Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite.

Authors:  Anukriti Sharma; Naseer Sangwan; Vivek Negi; Puneet Kohli; Jitendra Paul Khurana; Desiraju Lakshmi Narsimha Rao; Rup Lal
Journal:  BMC Genomics       Date:  2015-04-18       Impact factor: 3.969

8.  Draft Genome Sequence of the Toluene-Degrading Pseudomonas stutzeri Strain ST-9.

Authors:  Margarita Gomila; Antonio Busquets; Elena García-Valdés; Esti Michael; Rivka Cahan; Yeshayahu Nitzan; Jorge Lalucat
Journal:  Genome Announc       Date:  2015-06-04

9.  Draft Genome of Pseudomonas stutzeri Strain NF13, a Nitrogen Fixer Isolated from the Galapagos Rift Hydrothermal Vent.

Authors:  Arantxa Peña; Antonio Busquets; Margarita Gomila; Joan Mayol; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Antonio Bennasar; Jorge Lalucat
Journal:  Genome Announc       Date:  2013-03-21

10.  Draft Genome Sequence of Pseudomonas stutzeri Strain B1SMN1, a Nitrogen-Fixing and Naphthalene-Degrading Strain Isolated from Wastewater.

Authors:  Antonio Busquets; Arantxa Peña; Margarita Gomila; Joan Mayol; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Antonio Bennasar; Jorge Lalucat
Journal:  Genome Announc       Date:  2013-08-08
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