Literature DB >> 22843599

Genome sequence of the moderately halotolerant, arsenite-oxidizing bacterium Pseudomonas stutzeri TS44.

Xiangyang Li1, Jing Gong, Yao Hu, Lin Cai, Laurel Johnstone, Gregor Grass, Christopher Rensing, Gejiao Wang.   

Abstract

We present the draft genome sequence of Pseudomonas stutzeri TS44, a moderately halotolerant, arsenite-oxidizing bacterium isolated from arsenic-contaminated soil. The genome contains genes for arsenite oxidation, arsenic resistance, and ectoine/hydroxyectoine biosynthesis. The genome information will be useful for exploring adaptation of P. stutzeri TS44 to an arsenic-contaminated environment.

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Year:  2012        PMID： 22843599      PMCID： PMC3416245          DOI： 10.1128/JB.00907-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  20 in total

1.  Arsenite oxidase, an ancient bioenergetic enzyme.

Authors:  Evelyne Lebrun; Myriam Brugna; Frauke Baymann; Daniel Muller; Didier Lièvremont; Marie-Claire Lett; Wolfgang Nitschke
Journal:  Mol Biol Evol       Date:  2003-04-02       Impact factor: 16.240

2.  Mauve: multiple alignment of conserved genomic sequence with rearrangements.

Authors:  Aaron C E Darling; Bob Mau; Frederick R Blattner; Nicole T Perna
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

3.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 6.  Biology of Pseudomonas stutzeri.

Authors:  Jorge Lalucat; Antoni Bennasar; Rafael Bosch; Elena García-Valdés; Norberto J Palleroni
Journal:  Microbiol Mol Biol Rev       Date:  2006-06       Impact factor: 11.056

7.  Draft genome of Pseudomonas stutzeri strain ZoBell (CCUG 16156), a marine isolate and model organism for denitrification studies.

Authors:  Arantxa Peña; Antonio Busquets; Margarita Gomila; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Jorge Lalucat; Antonio Bennasar
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

8.  Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501.

Authors:  Yongliang Yan; Jian Yang; Yuetan Dou; Ming Chen; Shuzhen Ping; Junping Peng; Wei Lu; Wei Zhang; Ziying Yao; Hongquan Li; Wei Liu; Sheng He; Lizhao Geng; Xiaobing Zhang; Fan Yang; Haiying Yu; Yuhua Zhan; Danhua Li; Zhanglin Lin; Yiping Wang; Claudine Elmerich; Min Lin; Qi Jin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-21       Impact factor: 11.205

9.  A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Authors:  Daniel Muller; Claudine Médigue; Sandrine Koechler; Valérie Barbe; Mohamed Barakat; Emmanuel Talla; Violaine Bonnefoy; Evelyne Krin; Florence Arsène-Ploetze; Christine Carapito; Michael Chandler; Benoît Cournoyer; Stéphane Cruveiller; Caroline Dossat; Simon Duval; Michael Heymann; Emmanuelle Leize; Aurélie Lieutaud; Didier Lièvremont; Yuko Makita; Sophie Mangenot; Wolfgang Nitschke; Philippe Ortet; Nicolas Perdrial; Barbara Schoepp; Patricia Siguier; Diliana D Simeonova; Zoé Rouy; Béatrice Segurens; Evelyne Turlin; David Vallenet; Alain Van Dorsselaer; Stéphanie Weiss; Jean Weissenbach; Marie-Claire Lett; Antoine Danchin; Philippe N Bertin
Journal:  PLoS Genet       Date:  2007-03-05       Impact factor: 5.917

10.  Genes involved in arsenic transformation and resistance associated with different levels of arsenic-contaminated soils.

Authors:  Lin Cai; Guanghui Liu; Christopher Rensing; Gejiao Wang
Journal:  BMC Microbiol       Date:  2009-01-08       Impact factor: 3.605
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  8 in total

1.  Draft Genome Sequence of the Toluene-Degrading Pseudomonas stutzeri Strain ST-9.

Authors:  Margarita Gomila; Antonio Busquets; Elena García-Valdés; Esti Michael; Rivka Cahan; Yeshayahu Nitzan; Jorge Lalucat
Journal:  Genome Announc       Date:  2015-06-04

2.  Genomic evidence reveals the extreme diversity and wide distribution of the arsenic-related genes in Burkholderiales.

Authors:  Xiangyang Li; Linshuang Zhang; Gejiao Wang
Journal:  PLoS One       Date:  2014-03-14       Impact factor: 3.240

3.  Disrupting ROS-protection mechanism allows hydrogen peroxide to accumulate and oxidize Sb(III) to Sb(V) in Pseudomonas stutzeri TS44.

Authors:  Dan Wang; Fengqiu Zhu; Qian Wang; Christopher Rensing; Peng Yu; Jing Gong; Gejiao Wang
Journal:  BMC Microbiol       Date:  2016-11-25       Impact factor: 3.605

4.  Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14.

Authors:  George C diCenzo; Klaudia Debiec; Jan Krzysztoforski; Witold Uhrynowski; Alessio Mengoni; Camilla Fagorzi; Adrian Gorecki; Lukasz Dziewit; Tomasz Bajda; Grzegorz Rzepa; Lukasz Drewniak
Journal:  Genes (Basel)       Date:  2018-07-27       Impact factor: 4.096

5.  Comparative Genomics of Pseudomonas stutzeri Complex: Taxonomic Assignments and Genetic Diversity.

Authors:  Xiangyang Li; Zilin Yang; Zhao Wang; Weipeng Li; Guohui Zhang; Hongguang Yan
Journal:  Front Microbiol       Date:  2022-01-13       Impact factor: 5.640

6.  Draft Genome of the Nitrogen-Fixing Bacterium Pseudomonas stutzeri Strain KOS6 Isolated from Industrial Hydrocarbon Sludge.

Authors:  Tatiana V Grigoryeva; Aleksandr V Laikov; Rimma P Naumova; Aleksandr I Manolov; Andrey K Larin; Irina Y Karpova; Tatiana A Semashko; Dmitry G Alexeev; Elena S Kostryukova; Rudolf Müller; Vadim M Govorun
Journal:  Genome Announc       Date:  2013-01-31

7.  Effect of the natural arsenic gradient on the diversity and arsenic resistance of bacterial communities of the sediments of Camarones River (Atacama Desert, Chile).

Authors:  Carla G Leon; Ruben Moraga; Cristian Valenzuela; Concetta Gugliandolo; Angelina Lo Giudice; Maria Papale; Claudia Vilo; Qunfeng Dong; Carlos T Smith; Ramon Rossello-Mora; Jorge Yañez; Victor L Campos
Journal:  PLoS One       Date:  2018-05-01       Impact factor: 3.240

8.  Comparative Genomics of Pseudomonas sp. Strain SI-3 Associated With Macroalga Ulva prolifera, the Causative Species for Green Tide in the Yellow Sea.

Authors:  Huihui Fu; Peng Jiang; Jin Zhao; Chunhui Wu
Journal:  Front Microbiol       Date:  2018-07-02       Impact factor: 5.640
  8 in total

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